HEADER APOPTOSIS 23-JUN-10 2KZS TITLE DAXX HELICAL BUNDLE (DHB) DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEATH-ASSOCIATED PROTEIN 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 55 TO 144; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DAXX, DADB-159G18.9-007, DAMC-227D19.15-007, DAQB-126H3.2-007, SOURCE 6 XXBAC-BCX165D10.3-007, XXBAC-BPG185D15.6-007; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28A; SOURCE 11 OTHER_DETAILS: CLONED INTO PET28A FROM A HUMAN CDNA LIBRARY, USING SOURCE 12 NDEI AND XHOI KEYWDS HELICAL BUNDLE, DHB DOMAIN, FAS DEATH-DOMAIN ASSOCIATED PROTEIN, KEYWDS 2 DAXX, RASSF1C INTERACTING DOMAIN, APOPTOSIS EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR E.ESCOBAR-CABRERA,D.K.W.LAU,S.GIOVINAZZI,A.M.ISHOV,L.P.MCINTOSH REVDAT 3 14-JUN-23 2KZS 1 REMARK REVDAT 2 05-FEB-20 2KZS 1 SEQADV REVDAT 1 15-DEC-10 2KZS 0 JRNL AUTH E.ESCOBAR-CABRERA,D.K.LAU,S.GIOVINAZZI,A.M.ISHOV, JRNL AUTH 2 L.P.MCINTOSH JRNL TITL STRUCTURAL CHARACTERIZATION OF THE DAXX N-TERMINAL HELICAL JRNL TITL 2 BUNDLE DOMAIN AND ITS COMPLEX WITH RASSF1C. JRNL REF STRUCTURE V. 18 1642 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 21134643 JRNL DOI 10.1016/J.STR.2010.09.016 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.2, ARIA 2.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KZS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000101777. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.16 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-100% 13C; U-100% 15N] REMARK 210 DAXX-1, 10 MM POTASSIUM REMARK 210 PHOSPHATE-2, 100 MM KCL-3, 0.1 REMARK 210 MM EDTA-4, 95% H2O/5% D2O; 0.8 REMARK 210 MM [U-10% 13C] DAXX-5, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 2D 1H REMARK 210 -13C HSQC; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-15N TOCSY; 3D REMARK 210 1H-13C NOESY; 3D H(CC)(CO)NH- REMARK 210 TOCSY; 2D (HB)CB(CGCD)HD; 2D (HB) REMARK 210 CBCGCDCE)HE; 2D HMBC; CT METHYL- REMARK 210 METHYL-HSQC; CT AMIDE-METHYL-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 120 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG2 LYS A 141 H LYS A 142 1.24 REMARK 500 O LEU A 123 H ILE A 127 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 10 TYR A 59 CE1 TYR A 59 CZ -0.109 REMARK 500 10 TYR A 59 CZ TYR A 59 CE2 0.105 REMARK 500 17 TYR A 59 CE1 TYR A 59 CZ -0.143 REMARK 500 17 TYR A 59 CZ TYR A 59 CE2 0.136 REMARK 500 23 TYR A 59 CE1 TYR A 59 CZ -0.096 REMARK 500 23 TYR A 59 CZ TYR A 59 CE2 0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 78 46.21 -105.50 REMARK 500 1 LYS A 142 -36.70 -158.31 REMARK 500 1 LEU A 143 -35.71 164.23 REMARK 500 2 SER A 52 74.70 -115.31 REMARK 500 2 LYS A 56 -85.58 -84.25 REMARK 500 2 THR A 78 47.26 -109.54 REMARK 500 2 LYS A 141 174.85 -54.09 REMARK 500 3 LYS A 57 -50.74 109.64 REMARK 500 3 CYS A 58 108.58 48.10 REMARK 500 3 THR A 78 48.79 -105.39 REMARK 500 3 LYS A 140 78.99 -109.76 REMARK 500 3 LEU A 143 -86.66 68.09 REMARK 500 4 SER A 52 160.72 71.08 REMARK 500 4 MET A 54 31.29 -145.58 REMARK 500 4 LYS A 57 131.92 -36.27 REMARK 500 4 THR A 78 46.87 -107.09 REMARK 500 5 HIS A 53 -53.63 -148.72 REMARK 500 5 LYS A 56 -84.36 85.27 REMARK 500 5 LYS A 57 -148.44 -94.85 REMARK 500 5 CYS A 58 68.38 -160.82 REMARK 500 5 THR A 78 44.05 -99.13 REMARK 500 5 LYS A 141 31.34 -163.52 REMARK 500 5 LYS A 142 49.16 -79.04 REMARK 500 6 LYS A 56 -84.41 80.98 REMARK 500 6 LYS A 57 -74.62 -168.13 REMARK 500 6 CYS A 58 108.12 62.39 REMARK 500 7 MET A 54 -65.34 70.22 REMARK 500 7 LYS A 56 -96.43 -78.57 REMARK 500 7 THR A 78 48.94 -104.09 REMARK 500 7 LYS A 142 42.40 -169.54 REMARK 500 7 LEU A 143 -48.80 67.91 REMARK 500 8 HIS A 53 -147.40 43.26 REMARK 500 8 MET A 54 -143.23 -85.29 REMARK 500 8 LYS A 57 175.99 49.27 REMARK 500 8 CYS A 58 84.97 50.05 REMARK 500 8 LYS A 141 92.45 176.17 REMARK 500 8 LEU A 143 -40.00 79.93 REMARK 500 9 MET A 54 -67.14 -98.78 REMARK 500 9 LYS A 57 116.30 -35.01 REMARK 500 9 THR A 78 45.93 -105.64 REMARK 500 9 LYS A 140 70.76 -113.13 REMARK 500 9 LEU A 143 35.04 -161.06 REMARK 500 10 SER A 52 -62.94 69.05 REMARK 500 10 LYS A 57 -65.61 160.32 REMARK 500 10 CYS A 58 84.26 54.85 REMARK 500 10 LYS A 142 66.20 70.29 REMARK 500 10 LEU A 143 36.32 -75.33 REMARK 500 11 SER A 52 75.32 62.65 REMARK 500 11 HIS A 53 -53.03 -156.89 REMARK 500 11 MET A 54 -74.59 66.61 REMARK 500 REMARK 500 THIS ENTRY HAS 128 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17018 RELATED DB: BMRB DBREF 2KZS A 55 144 UNP Q4VX54 Q4VX54_HUMAN 55 144 SEQADV 2KZS GLY A 51 UNP Q4VX54 EXPRESSION TAG SEQADV 2KZS SER A 52 UNP Q4VX54 EXPRESSION TAG SEQADV 2KZS HIS A 53 UNP Q4VX54 EXPRESSION TAG SEQADV 2KZS MET A 54 UNP Q4VX54 EXPRESSION TAG SEQRES 1 A 94 GLY SER HIS MET GLY LYS LYS CYS TYR LYS LEU GLU ASN SEQRES 2 A 94 GLU LYS LEU PHE GLU GLU PHE LEU GLU LEU CYS LYS MET SEQRES 3 A 94 GLN THR ALA ASP HIS PRO GLU VAL VAL PRO PHE LEU TYR SEQRES 4 A 94 ASN ARG GLN GLN ARG ALA HIS SER LEU PHE LEU ALA SER SEQRES 5 A 94 ALA GLU PHE CYS ASN ILE LEU SER ARG VAL LEU SER ARG SEQRES 6 A 94 ALA ARG SER ARG PRO ALA LYS LEU TYR VAL TYR ILE ASN SEQRES 7 A 94 GLU LEU CYS THR VAL LEU LYS ALA HIS SER ALA LYS LYS SEQRES 8 A 94 LYS LEU ASN HELIX 1 1 TYR A 59 THR A 78 1 20 HELIX 2 2 GLU A 83 ARG A 94 1 12 HELIX 3 3 HIS A 96 ALA A 101 1 6 HELIX 4 4 SER A 102 ARG A 119 1 18 HELIX 5 5 LYS A 122 HIS A 137 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1