HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-JUN-10 2L01 TITLE SOLUTION NMR STRUCTURE OF PROTEIN BVU3908 FROM BACTEROIDES VULGATUS, TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET BVR153 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 STRAIN: ATCC 8482; SOURCE 5 GENE: BVU_3908; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 21-23C KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.ELETSKY,C.LEE,K.WANG,T.B.CICCOSANTI,R.HAMILTON,J.B.ACTON,G.B.XIAO, AUTHOR 2 J.K.EVERETT,J.H.PRESTEGARD,G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 15-MAY-24 2L01 1 REMARK REVDAT 3 14-JUN-23 2L01 1 REMARK REVDAT 2 05-FEB-20 2L01 1 REMARK SEQADV REVDAT 1 25-AUG-10 2L01 0 JRNL AUTH A.ELETSKY,D.LEE,C.WANG,K.CICCOSANTI,T.B.HAMILTON,R.B.ACTON, JRNL AUTH 2 J.B.XIAO,G.K.EVERETT,T.H.PRESTEGARD,G.T.MONTELIONE, JRNL AUTH 3 T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF PROTEIN BVU3908 FROM BACTEROIDES JRNL TITL 2 VULGATUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2, CYANA 3.0 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 ITERATIVELY WITH CYANA 3.0 USING NOE-BASED CONSTRAINTS, PHI AND REMARK 3 PSI DIHEDRAL ANGLE CONSTRAINTS FROM TALOS+, AND BACKBONE H-N RDC REMARK 3 CONSTRAINTS FROM TWO ALIGNMENT MEDIA. THE 20 CONFORMERS OUT OF REMARK 3 100 WITH THE LOWEST TARGET FUNCTION WERE FURTHER REFINED BY REMARK 3 SIMULATED ANNEALING IN EXPLICIT WATER BATH USING THE PROGRAM CNS REMARK 3 WITH PARAM19 FORCE FIELD AND UPPER LIMIT CONSTRAINTS RELAXED BY REMARK 3 5% REMARK 4 REMARK 4 2L01 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000101785. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-100% 13C; U-100% 15N] REMARK 210 BVR153, 20 MM MES, 100 MM SODIUM REMARK 210 CHLORIDE, 5 MM CALCIUM CHLORIDE, REMARK 210 0.02 % SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O; 1.1 MM [U-5% 13C; U-100% REMARK 210 15N] BVR153, 20 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 0.02 % SODIUM AZIDE, REMARK 210 90% H2O/10% D2O; 0.7 MM [U-5% REMARK 210 13C; U-100% 15N] BVR153, 13 MM REMARK 210 MES, 67 MM SODIUM CHLORIDE, 3.4 REMARK 210 MM CALCIUM CHLORIDE, 0.013 % REMARK 210 SODIUM AZIDE, 4.0 % C12E5 REMARK 210 POLYETHYLENE GLYCOL, 4 % HEXANOL, REMARK 210 80% H2O/20% D2O; 1.0 MM [U-5% REMARK 210 13C; U-100% 15N] BVR153, 18 MM REMARK 210 MES, 92 MM SODIUM CHLORIDE, 34.6 REMARK 210 MM CALCIUM CHLORIDE, 0.018 % REMARK 210 SODIUM AZIDE, 80% H2O/20% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C CT REMARK 210 -HSQC ALIPHATIC; 3D HNCO; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 2D 1H-13C REMARK 210 CT-HSQC AROMATIC; 3D SIMUTANEOUS REMARK 210 13C-AROMATIC,13C-ALIPHATIC,15N REMARK 210 EDITED 1H-1H NOESY; 3D HN(CA)CO; REMARK 210 3D HBHA(CO)NH; 3D HCCH-COSY REMARK 210 ALIPHATIC; 3D HCCH-COSY AROMATIC; REMARK 210 3D HCCH-TOCSY ALIPHATIC; 2D 1H- REMARK 210 13C CT-HSQC METHYL; 2D J- REMARK 210 MODULATION 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.2, CYANA 3.0, REMARK 210 AUTOSTRUCTURE 2.2.1, AUTOASSIGN REMARK 210 2.3.0, NMRPIPE, XEASY 1.3.13, REMARK 210 VNMRJ 2.1B, TALOS+ REMARK 210 1.2009.0721.18, CARA 1.8.4, REMARK 210 PROSA 6.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 69 98.99 -68.82 REMARK 500 1 HIS A 75 81.96 -69.50 REMARK 500 1 HIS B 76 -161.16 64.11 REMARK 500 2 LYS A 2 95.15 -61.33 REMARK 500 3 HIS A 73 62.53 -105.20 REMARK 500 4 VAL A 69 36.91 -83.89 REMARK 500 4 VAL B 69 87.34 -67.03 REMARK 500 5 LEU A 70 34.39 -91.85 REMARK 500 5 LYS B 2 91.42 -62.95 REMARK 500 5 VAL B 69 96.35 -69.25 REMARK 500 6 HIS A 73 97.05 -160.25 REMARK 500 6 LYS B 2 78.65 58.04 REMARK 500 6 VAL B 69 16.82 57.55 REMARK 500 6 HIS B 74 93.74 -163.07 REMARK 500 6 HIS B 76 125.56 -170.50 REMARK 500 7 VAL A 69 94.39 -69.07 REMARK 500 7 HIS B 72 -76.98 -71.37 REMARK 500 7 HIS B 73 117.10 38.14 REMARK 500 7 HIS B 75 113.84 71.14 REMARK 500 8 GLU A 71 89.88 -65.49 REMARK 500 8 HIS A 74 98.66 -58.38 REMARK 500 8 LEU B 70 86.70 -66.99 REMARK 500 9 HIS A 72 58.52 -100.34 REMARK 500 9 HIS A 73 -38.32 -133.56 REMARK 500 9 HIS A 74 32.48 -89.37 REMARK 500 9 VAL B 69 27.79 49.63 REMARK 500 9 GLU B 71 86.47 62.48 REMARK 500 10 LYS A 2 -24.25 -162.69 REMARK 500 10 LYS A 37 -64.07 70.51 REMARK 500 10 LEU A 70 95.08 -64.88 REMARK 500 10 HIS A 76 91.22 65.22 REMARK 500 10 GLU B 23 23.09 -79.52 REMARK 500 10 GLU B 71 104.84 65.84 REMARK 500 10 HIS B 72 14.31 -154.87 REMARK 500 10 HIS B 74 94.30 -52.03 REMARK 500 11 LEU B 70 108.15 -58.31 REMARK 500 11 HIS B 72 91.11 -59.17 REMARK 500 12 LYS A 2 84.78 63.22 REMARK 500 12 LEU A 70 98.67 -52.35 REMARK 500 12 HIS A 73 85.38 62.01 REMARK 500 12 GLU B 23 34.36 -86.28 REMARK 500 13 VAL A 69 87.36 -67.97 REMARK 500 13 HIS A 75 90.94 -69.19 REMARK 500 13 LYS B 35 37.53 72.10 REMARK 500 14 HIS B 72 45.33 -93.11 REMARK 500 15 VAL B 69 62.09 28.84 REMARK 500 16 LEU A 70 90.18 -69.70 REMARK 500 16 HIS A 76 -156.57 -123.44 REMARK 500 16 LYS B 35 39.33 72.89 REMARK 500 16 LYS B 37 -28.02 -148.92 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BVR153 RELATED DB: TARGETDB REMARK 900 RELATED ID: 17025 RELATED DB: BMRB DBREF 2L01 A 1 69 UNP A6L747 A6L747_BACV8 1 69 DBREF 2L01 B 1 69 UNP A6L747 A6L747_BACV8 1 69 SEQADV 2L01 LEU A 70 UNP A6L747 EXPRESSION TAG SEQADV 2L01 GLU A 71 UNP A6L747 EXPRESSION TAG SEQADV 2L01 HIS A 72 UNP A6L747 EXPRESSION TAG SEQADV 2L01 HIS A 73 UNP A6L747 EXPRESSION TAG SEQADV 2L01 HIS A 74 UNP A6L747 EXPRESSION TAG SEQADV 2L01 HIS A 75 UNP A6L747 EXPRESSION TAG SEQADV 2L01 HIS A 76 UNP A6L747 EXPRESSION TAG SEQADV 2L01 HIS A 77 UNP A6L747 EXPRESSION TAG SEQADV 2L01 LEU B 70 UNP A6L747 EXPRESSION TAG SEQADV 2L01 GLU B 71 UNP A6L747 EXPRESSION TAG SEQADV 2L01 HIS B 72 UNP A6L747 EXPRESSION TAG SEQADV 2L01 HIS B 73 UNP A6L747 EXPRESSION TAG SEQADV 2L01 HIS B 74 UNP A6L747 EXPRESSION TAG SEQADV 2L01 HIS B 75 UNP A6L747 EXPRESSION TAG SEQADV 2L01 HIS B 76 UNP A6L747 EXPRESSION TAG SEQADV 2L01 HIS B 77 UNP A6L747 EXPRESSION TAG SEQRES 1 A 77 MET LYS MET LEU LYS GLU LYS ALA GLY ALA LEU ALA GLY SEQRES 2 A 77 GLN ILE TRP GLU ALA LEU ASN GLY THR GLU GLY LEU THR SEQRES 3 A 77 GLN LYS GLN ILE LYS LYS ALA THR LYS LEU LYS ALA ASP SEQRES 4 A 77 LYS ASP PHE PHE LEU GLY LEU GLY TRP LEU LEU ARG GLU SEQRES 5 A 77 ASP LYS VAL VAL THR SER GLU VAL GLU GLY GLU ILE PHE SEQRES 6 A 77 VAL LYS LEU VAL LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 77 MET LYS MET LEU LYS GLU LYS ALA GLY ALA LEU ALA GLY SEQRES 2 B 77 GLN ILE TRP GLU ALA LEU ASN GLY THR GLU GLY LEU THR SEQRES 3 B 77 GLN LYS GLN ILE LYS LYS ALA THR LYS LEU LYS ALA ASP SEQRES 4 B 77 LYS ASP PHE PHE LEU GLY LEU GLY TRP LEU LEU ARG GLU SEQRES 5 B 77 ASP LYS VAL VAL THR SER GLU VAL GLU GLY GLU ILE PHE SEQRES 6 B 77 VAL LYS LEU VAL LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 MET A 3 ASN A 20 1 18 HELIX 2 2 GLN A 27 LYS A 35 1 9 HELIX 3 3 ALA A 38 GLU A 52 1 15 HELIX 4 4 MET B 3 ASN B 20 1 18 HELIX 5 5 GLN B 27 LYS B 35 1 9 HELIX 6 6 ASP B 39 GLU B 52 1 14 SHEET 1 A 3 LEU A 25 THR A 26 0 SHEET 2 A 3 GLU A 63 LEU A 68 -1 O VAL A 66 N LEU A 25 SHEET 3 A 3 VAL A 55 VAL A 60 -1 N SER A 58 O PHE A 65 SHEET 1 B 3 LEU B 25 THR B 26 0 SHEET 2 B 3 GLU B 63 LEU B 68 -1 O VAL B 66 N LEU B 25 SHEET 3 B 3 VAL B 55 VAL B 60 -1 N SER B 58 O PHE B 65 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1