HEADER VIRAL PROTEIN 30-JUN-10 2L04 TITLE THE SOLUTION STRUCTURE OF THE C-TERMINAL IG-LIKE DOMAIN OF THE TITLE 2 BACTERIOPHAGE LAMBDA TAIL TUBE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR TAIL PROTEIN V; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL, UNP RESIDUES 160-246; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE LAMBDA; SOURCE 4 ORGANISM_TAXID: 10710; SOURCE 5 GENE: V; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET32B KEYWDS BACTERIOPHAGE LAMBDA, PHAGE TAIL, GPV, IG-LIKE DOMAIN, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.G.PELL,G.M.C.GASMI-SEABROOK,L.W.DONALDSON,P.HOWELL,A.R.DAVIDSON, AUTHOR 2 K.L.MAXWELL REVDAT 3 05-FEB-20 2L04 1 SEQADV REVDAT 2 19-JUN-13 2L04 1 JRNL VERSN REVDAT 1 22-SEP-10 2L04 0 JRNL AUTH L.G.PELL,G.M.GASMI-SEABROOK,M.MORAIS,P.NEUDECKER,V.KANELIS, JRNL AUTH 2 D.BONA,L.W.DONALDSON,A.M.EDWARDS,P.L.HOWELL,A.R.DAVIDSON, JRNL AUTH 3 K.L.MAXWELL JRNL TITL THE SOLUTION STRUCTURE OF THE C-TERMINAL IG-LIKE DOMAIN OF JRNL TITL 2 THE BACTERIOPHAGE L TAIL TUBE PROTEIN. JRNL REF J.MOL.BIOL. V. 403 468 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20826161 JRNL DOI 10.1016/J.JMB.2010.08.044 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L04 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000101788. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : .2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM PHOSPHATE-1, 200 MM REMARK 210 SODIUM CHLORIDE-2, 90% H2O/10% REMARK 210 D2O; 50 MM SODIUM PHOSPHATE-3, REMARK 210 200 MM SODIUM CHLORIDE-4, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HCCH-TOCSY; 3D REMARK 210 HNCO; 3D C(CO)NH; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D H(CCO) REMARK 210 NH REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 160 -70.01 -64.08 REMARK 500 1 ALA A 161 -169.16 -178.55 REMARK 500 1 PRO A 168 -168.85 -69.74 REMARK 500 1 SER A 170 79.06 46.43 REMARK 500 1 THR A 171 -174.89 -175.09 REMARK 500 1 THR A 191 70.50 47.42 REMARK 500 1 ASP A 192 119.41 -167.80 REMARK 500 1 LYS A 193 92.43 -65.12 REMARK 500 1 ASP A 201 -52.52 -127.70 REMARK 500 1 LYS A 204 18.53 -152.59 REMARK 500 1 ALA A 205 146.61 -177.22 REMARK 500 1 SER A 210 123.45 -172.08 REMARK 500 1 PRO A 227 -178.30 -69.79 REMARK 500 1 GLU A 234 -70.36 -51.06 REMARK 500 2 ALA A 161 -169.60 -177.78 REMARK 500 2 PRO A 168 -167.20 -69.82 REMARK 500 2 SER A 170 77.29 46.41 REMARK 500 2 THR A 171 -174.82 -175.72 REMARK 500 2 ASP A 192 116.81 -167.20 REMARK 500 2 ASP A 201 -60.02 -129.01 REMARK 500 2 LYS A 204 18.63 -152.84 REMARK 500 2 ALA A 205 144.91 -171.26 REMARK 500 2 PRO A 227 -179.55 -69.71 REMARK 500 3 ALA A 161 -169.14 -178.28 REMARK 500 3 PRO A 168 -166.75 -69.80 REMARK 500 3 SER A 170 76.30 46.72 REMARK 500 3 THR A 171 -174.90 -174.23 REMARK 500 3 ASP A 192 118.65 -170.22 REMARK 500 3 LYS A 193 96.78 -63.24 REMARK 500 3 LYS A 204 18.23 -153.99 REMARK 500 3 SER A 210 123.85 -172.19 REMARK 500 3 PRO A 227 -179.67 -69.70 REMARK 500 3 GLU A 234 -73.21 -51.66 REMARK 500 4 ALA A 159 -169.71 -169.19 REMARK 500 4 ALA A 160 129.36 -175.15 REMARK 500 4 ALA A 161 -167.59 -60.65 REMARK 500 4 PRO A 168 -166.43 -69.75 REMARK 500 4 SER A 170 79.33 46.32 REMARK 500 4 THR A 171 -174.59 -175.55 REMARK 500 4 ASP A 192 112.51 -164.70 REMARK 500 4 LYS A 193 105.55 -52.94 REMARK 500 4 ASP A 201 91.40 -163.81 REMARK 500 4 LYS A 204 19.45 -156.42 REMARK 500 4 ALA A 205 149.85 -179.64 REMARK 500 4 SER A 210 126.71 -172.38 REMARK 500 4 PRO A 227 -178.14 -69.75 REMARK 500 5 MET A 158 66.71 -113.80 REMARK 500 5 ALA A 160 -62.80 -108.99 REMARK 500 5 ALA A 161 -168.60 -178.74 REMARK 500 5 PRO A 168 -165.03 -69.75 REMARK 500 REMARK 500 THIS ENTRY HAS 224 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17028 RELATED DB: BMRB DBREF 2L04 A 160 246 UNP P03733 VMTV_LAMBD 160 246 SEQADV 2L04 GLY A 156 UNP P03733 EXPRESSION TAG SEQADV 2L04 ALA A 157 UNP P03733 EXPRESSION TAG SEQADV 2L04 MET A 158 UNP P03733 EXPRESSION TAG SEQADV 2L04 ALA A 159 UNP P03733 EXPRESSION TAG SEQRES 1 A 91 GLY ALA MET ALA ALA ALA THR GLY MET THR VAL THR PRO SEQRES 2 A 91 ALA SER THR SER VAL VAL LYS GLY GLN SER THR THR LEU SEQRES 3 A 91 THR VAL ALA PHE GLN PRO GLU GLY VAL THR ASP LYS SER SEQRES 4 A 91 PHE ARG ALA VAL SER ALA ASP LYS THR LYS ALA THR VAL SEQRES 5 A 91 SER VAL SER GLY MET THR ILE THR VAL ASN GLY VAL ALA SEQRES 6 A 91 ALA GLY LYS VAL ASN ILE PRO VAL VAL SER GLY ASN GLY SEQRES 7 A 91 GLU PHE ALA ALA VAL ALA GLU ILE THR VAL THR ALA SER SHEET 1 A 4 MET A 164 THR A 167 0 SHEET 2 A 4 SER A 178 PHE A 185 -1 O THR A 182 N THR A 167 SHEET 3 A 4 THR A 213 ASN A 217 -1 O ILE A 214 N LEU A 181 SHEET 4 A 4 THR A 206 SER A 210 -1 N SER A 208 O THR A 215 SHEET 1 B 3 THR A 171 VAL A 174 0 SHEET 2 B 3 GLU A 240 THR A 244 1 O THR A 244 N VAL A 173 SHEET 3 B 3 GLY A 222 ASN A 225 -1 N VAL A 224 O ILE A 241 SHEET 1 C 3 PHE A 195 ALA A 197 0 SHEET 2 C 3 VAL A 228 SER A 230 -1 O VAL A 229 N ARG A 196 SHEET 3 C 3 ALA A 236 ALA A 237 -1 O ALA A 237 N VAL A 228 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1