HEADER TRANSPORT PROTEIN 30-JUN-10 2L08 TITLE SOLUTION NMR STRUCTURE OF NONSENSE MRNA REDUCING FACTOR 3A FROM H. TITLE 2 SAPIENS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR4714B COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATOR OF NONSENSE TRANSCRIPTS 3A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 70-155; COMPND 5 SYNONYM: NONSENSE MRNA REDUCING FACTOR 3A, UP-FRAMESHIFT SUPPRESSOR 3 COMPND 6 HOMOLOG A, HUPF3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UPF3A, RENT3A, UPF3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 15-15C KEYWDS NESG, NONSENSE REGULATOR, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.MANI,L.MAO,C.CICCOSANTI,R.SHASTRY,T.B.ACTON,R.XIAO,G.V.T.SWAPNA, AUTHOR 2 J.K.EVERETT,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (NESG) REVDAT 4 15-MAY-24 2L08 1 REMARK REVDAT 3 14-JUN-23 2L08 1 REMARK REVDAT 2 05-FEB-20 2L08 1 REMARK SEQADV REVDAT 1 11-AUG-10 2L08 0 JRNL AUTH R.MANI,L.MAO,C.CICCOSANTI,R.SHASTRY,T.B.ACTON,R.XIAO, JRNL AUTH 2 G.V.T.SWAPNA,J.K.EVERETT,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF NONSENSE MRNA REDUCING FACTOR 3A JRNL TITL 2 FROM H. SAPIENS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM JRNL TITL 3 TARGET HR4714B JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 2.0.6 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FINAL STRUCTURE QUALITY (EXCLUDING 10 REMARK 3 RESIDUE TAG) DETERMINED USING PSVS-V1.4: ORDERED RESIDUES ARE REMARK 3 DEFINES AS: 10-19,22-34,36-45,54-72,76-94. (A) RMSD (ORDERED REMARK 3 RESIDUES) ALL BACKBONE AROMS: 0.6A. AND HEAVY ATOMS 1.0A. (B) REMARK 3 RAMACHANDRAN STATISTICS FOR ORDERED RESIDUES: MOST FAVORED REMARK 3 REGION: 85.1% ADDITIONALLY FAVORED REGION: 14.8% GENERAOUSLY REMARK 3 ALLOWED REGION: 0.1% DISALLOWED REGION: 0.1%. (C) PROCHECK REMARK 3 SCORES FOR ORDERED RESIDUES (RAW/Z): PHI/PSI -0.73/-2.56, ALL - REMARK 3 0.65/-3.84, (D) MOLPROBITY CLASHSCORES (RAW/Z)22.41/-2.32 (E) REMARK 3 RPF SCORES FOR THE GOODNESS FIT TO NOESY DATA: RECALL: 89, REMARK 3 PRECISION: 94, F-MEASURE: 92, FINAL DP-SCORE - (F) RMS DEVIATION REMARK 3 FOR BOND ANGLES - 6.15, RMS DEVIATION FOR BOND LENGTHS 0.01A. REMARK 4 REMARK 4 2L08 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000101792. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 100MM NACL, 10MM TRIS-HCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.82 MM [U-100% 13C; U-100% 15N] REMARK 210 HR4714B, 90% H2O/10% D2O; 0.9 MM REMARK 210 [U-10% 13C; U-99% 15N] HR4714B, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HNCA; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 C(CO)NH-TOCSY; 3D CCH-TOCSY; 3D REMARK 210 HNHA; 3D SIMUL NOESY; 3D AROM REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, AUTOSTRUCTURE 2.2.1, REMARK 210 PINE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS OBTAINED USING TRIPLE RESONANCE NMR REMARK 210 SPECTROSCOPY FOR BACKBONE AND SIDE CHAIN ASSIGNMENTS. AUTOMATED REMARK 210 NOESY ASSIGNMENTS WERE MADE USING AUTOSTRUCTURE AND CYANA3.0. REMARK 210 DIHEDRAL ANGLE CONSTRAINTS WERE OBTAINED USING TALOS. THE REMARK 210 STRUCTURE CALCULATION WAS DONE EXCLUDING THE 10-RESIDUE N- REMARK 210 TERMINAL TAG. COMPLETENESS OF ASSIGNMENT EXCLUDING THE TAG: REMARK 210 BACKBONE - 80%, SIDECHAIN - 80%. PEAKS FOR 13 RESIDUES IN NHSQC REMARK 210 SPECTRA ARE MISSING DUE TO LINE BROADENING. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 5 90.17 63.58 REMARK 500 1 PRO A 34 -72.55 -70.40 REMARK 500 1 PHE A 39 -166.28 -108.39 REMARK 500 1 LEU A 48 88.48 65.11 REMARK 500 1 PRO A 50 22.06 -75.43 REMARK 500 1 HIS A 51 -63.87 73.10 REMARK 500 1 ASP A 74 91.49 -64.08 REMARK 500 1 PRO A 94 98.67 -53.90 REMARK 500 2 HIS A 4 43.99 -82.75 REMARK 500 2 HIS A 5 45.54 -102.74 REMARK 500 2 ARG A 16 77.25 62.66 REMARK 500 2 PRO A 19 85.82 -63.60 REMARK 500 2 LEU A 46 108.49 -55.65 REMARK 500 3 HIS A 5 80.19 64.21 REMARK 500 3 ARG A 16 45.59 70.71 REMARK 500 3 LYS A 23 -36.51 -39.95 REMARK 500 3 PRO A 32 36.53 -80.78 REMARK 500 3 PRO A 34 -75.73 -76.69 REMARK 500 3 HIS A 36 -178.78 -177.23 REMARK 500 3 TYR A 49 86.86 64.93 REMARK 500 3 LEU A 52 -72.75 66.03 REMARK 500 3 SER A 54 137.17 -173.65 REMARK 500 3 ASP A 74 97.63 -67.68 REMARK 500 3 ALA A 88 95.31 -62.81 REMARK 500 4 MET A 11 104.47 -168.20 REMARK 500 4 PHE A 39 -162.51 -118.86 REMARK 500 4 LEU A 48 80.75 -68.30 REMARK 500 4 ASP A 74 92.34 -55.78 REMARK 500 5 HIS A 3 76.05 -65.43 REMARK 500 5 HIS A 4 154.43 178.18 REMARK 500 5 PRO A 32 21.36 -75.15 REMARK 500 5 HIS A 36 158.61 179.13 REMARK 500 5 LEU A 46 80.03 -69.30 REMARK 500 5 TYR A 49 87.37 66.48 REMARK 500 5 PRO A 50 90.02 -66.56 REMARK 500 5 ARG A 61 -56.41 -129.65 REMARK 500 5 ASP A 74 86.20 -67.06 REMARK 500 5 PRO A 94 9.49 -66.99 REMARK 500 5 PHE A 95 -81.03 63.55 REMARK 500 6 PRO A 50 -172.54 -61.86 REMARK 500 6 HIS A 51 -7.83 73.00 REMARK 500 6 TYR A 53 84.89 -63.45 REMARK 500 6 ILE A 66 -73.78 -62.98 REMARK 500 7 SER A 9 -169.16 -119.17 REMARK 500 7 PRO A 34 -87.49 -76.45 REMARK 500 7 PHE A 39 -152.44 -91.50 REMARK 500 7 PHE A 73 -57.75 -143.12 REMARK 500 7 ASP A 74 -70.72 44.40 REMARK 500 8 TYR A 49 70.11 60.12 REMARK 500 8 ARG A 61 -55.38 -143.07 REMARK 500 REMARK 500 THIS ENTRY HAS 138 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17033 RELATED DB: BMRB REMARK 900 RELATED ID: HR4714B RELATED DB: TARGETDB DBREF 2L08 A 12 97 UNP Q9H1J1 REN3A_HUMAN 70 155 SEQADV 2L08 MET A 1 UNP Q9H1J1 EXPRESSION TAG SEQADV 2L08 GLY A 2 UNP Q9H1J1 EXPRESSION TAG SEQADV 2L08 HIS A 3 UNP Q9H1J1 EXPRESSION TAG SEQADV 2L08 HIS A 4 UNP Q9H1J1 EXPRESSION TAG SEQADV 2L08 HIS A 5 UNP Q9H1J1 EXPRESSION TAG SEQADV 2L08 HIS A 6 UNP Q9H1J1 EXPRESSION TAG SEQADV 2L08 HIS A 7 UNP Q9H1J1 EXPRESSION TAG SEQADV 2L08 HIS A 8 UNP Q9H1J1 EXPRESSION TAG SEQADV 2L08 SER A 9 UNP Q9H1J1 EXPRESSION TAG SEQADV 2L08 HIS A 10 UNP Q9H1J1 EXPRESSION TAG SEQADV 2L08 MET A 11 UNP Q9H1J1 EXPRESSION TAG SEQRES 1 A 97 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET VAL VAL SEQRES 2 A 97 ILE ARG ARG LEU PRO PRO GLY LEU THR LYS GLU GLN LEU SEQRES 3 A 97 GLU GLU GLN LEU ARG PRO LEU PRO ALA HIS ASP TYR PHE SEQRES 4 A 97 GLU PHE PHE ALA ALA ASP LEU SER LEU TYR PRO HIS LEU SEQRES 5 A 97 TYR SER ARG ALA TYR ILE ASN PHE ARG ASN PRO ASP ASP SEQRES 6 A 97 ILE LEU LEU PHE ARG ASP ARG PHE ASP GLY TYR ILE PHE SEQRES 7 A 97 LEU ASP SER LYS GLY LEU GLU TYR PRO ALA VAL VAL GLU SEQRES 8 A 97 PHE ALA PRO PHE GLN LYS HELIX 1 1 THR A 22 GLU A 27 1 6 HELIX 2 2 ASN A 62 PHE A 73 1 12 SHEET 1 A 5 HIS A 36 TYR A 38 0 SHEET 2 A 5 TYR A 57 PHE A 60 -1 O ASN A 59 N ASP A 37 SHEET 3 A 5 VAL A 12 ARG A 15 -1 N VAL A 12 O ILE A 58 SHEET 4 A 5 GLU A 85 PHE A 92 -1 O GLU A 91 N VAL A 13 SHEET 5 A 5 TYR A 76 LEU A 79 -1 N PHE A 78 O TYR A 86 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1