HEADER LIGASE 30-JUN-10 2L0B TITLE SOLUTION NMR STRUCTURE OF ZINC FINGER DOMAIN OF E3 UBIQUITIN-PROTEIN TITLE 2 LIGASE PRAJA-1 FROM HOMO SAPIENS, NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM (NESG) TARGET HR4710B COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE PRAJA-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RING-TYPE ZINC FINGER RESIDUES 564-643; COMPND 5 SYNONYM: PRAJA1, RING FINGER PROTEIN 70; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PJA1, RNF70; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET 14-15C KEYWDS ZINC FINGER, NESG, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,S.TONG,K.HAMILTON,C.CICCOSANTI,R.SHASTRY,T.B.ACTON,R.XIAO, AUTHOR 2 J.K.EVERETT,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (NESG) REVDAT 3 01-MAY-24 2L0B 1 REMARK SEQADV LINK REVDAT 2 29-SEP-10 2L0B 1 TITLE REVDAT 1 25-AUG-10 2L0B 0 JRNL AUTH G.LIU,S.TONG,R.XIAO,T.B.ACTON,J.K.EVERETT,G.T.MONTELIONE JRNL TITL SOLUTION STRUCTURE OF ZINC FINGER DOMAIN OF E3 JRNL TITL 2 UBIQUITIN-PROTEIN LIGASE PROTEIN PRAJA-1 FROM HOMO SAPIENS, JRNL TITL 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET JRNL TITL 4 HR4710B JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA, AUTOSTRUCTURE, XEASY REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE), BARTELS ET AL. (XEASY) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L0B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000101795. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : N.A. REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.94 MM [U-100% 13C; U-100% 15N] REMARK 210 PJA1 ZINC FINGER DOMAIN, 90% H2O/ REMARK 210 10% D2O; 0.82 MM [U-10% 13C; U- REMARK 210 100% 15N] PJA1 ZINC FINGER REMARK 210 DOMAIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-13C-15N SIMUTANEOUS NOESY; REMARK 210 3D 1H-13C AROMATIC NOESY; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D C(CO) REMARK 210 NH; 3D HNCO; 3D HCCH-TOCSY; 3D REMARK 210 HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA, AUTOSTRUCTURE, REMARK 210 TALOS+, XEASY, AUTOASSIGN, REMARK 210 NMRPIPE, VNMRJ, TOPSPIN REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 31 OD1 ASP A 33 1.58 REMARK 500 OD1 ASP A 23 HZ1 LYS A 67 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 10 143.65 72.30 REMARK 500 1 GLN A 39 -155.87 -160.97 REMARK 500 2 HIS A 7 23.63 -149.84 REMARK 500 2 HIS A 8 103.63 -55.67 REMARK 500 2 MET A 11 65.91 64.51 REMARK 500 2 HIS A 34 34.76 -141.32 REMARK 500 2 VAL A 37 91.79 60.51 REMARK 500 2 GLN A 39 -52.65 -141.16 REMARK 500 2 PRO A 60 -7.80 -58.81 REMARK 500 3 HIS A 4 79.81 -113.91 REMARK 500 3 PRO A 60 4.32 -63.44 REMARK 500 3 HIS A 62 89.13 66.59 REMARK 500 3 HIS A 63 125.40 -172.53 REMARK 500 3 ARG A 84 91.71 63.67 REMARK 500 4 ASN A 14 101.54 70.32 REMARK 500 4 ALA A 36 -2.83 67.17 REMARK 500 4 VAL A 37 -64.84 72.77 REMARK 500 4 PRO A 60 51.04 -68.83 REMARK 500 4 CYS A 61 16.80 -153.37 REMARK 500 4 HIS A 62 18.16 56.95 REMARK 500 4 SER A 77 117.28 -172.33 REMARK 500 5 HIS A 10 -34.87 70.86 REMARK 500 5 HIS A 62 62.44 69.22 REMARK 500 6 HIS A 7 -68.69 -97.86 REMARK 500 6 ASP A 33 -51.51 76.14 REMARK 500 6 HIS A 34 55.74 -111.38 REMARK 500 6 SER A 77 11.66 -148.74 REMARK 500 7 HIS A 3 78.18 58.42 REMARK 500 7 HIS A 8 109.68 -59.98 REMARK 500 7 SER A 9 112.23 -171.17 REMARK 500 8 HIS A 3 -169.89 -108.54 REMARK 500 8 MET A 11 -63.30 69.57 REMARK 500 8 MET A 41 13.09 -141.13 REMARK 500 8 GLU A 49 -169.99 -77.92 REMARK 500 8 PRO A 60 -9.72 -59.79 REMARK 500 9 HIS A 3 -57.48 -126.02 REMARK 500 9 HIS A 4 71.60 57.00 REMARK 500 9 VAL A 12 -27.72 -150.79 REMARK 500 9 HIS A 34 64.60 -153.18 REMARK 500 11 HIS A 4 51.13 -117.34 REMARK 500 11 SER A 9 103.80 -56.90 REMARK 500 11 ASP A 33 74.47 53.44 REMARK 500 11 HIS A 34 29.51 -165.22 REMARK 500 11 GLU A 49 -169.87 -101.89 REMARK 500 11 HIS A 62 77.79 62.24 REMARK 500 12 ALA A 36 76.62 60.16 REMARK 500 13 ALA A 13 -72.72 -57.08 REMARK 500 14 VAL A 12 -74.32 -115.59 REMARK 500 14 MET A 41 22.45 -76.37 REMARK 500 14 HIS A 62 74.78 60.14 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 143 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 43 SG REMARK 620 2 CYS A 46 SG 101.5 REMARK 620 3 HIS A 66 ND1 97.4 123.1 REMARK 620 4 CYS A 69 SG 97.4 114.4 115.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 161 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 61 SG REMARK 620 2 HIS A 63 ND1 121.5 REMARK 620 3 CYS A 80 SG 100.9 97.4 REMARK 620 4 CYS A 83 SG 115.3 116.7 97.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 161 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HR4710B RELATED DB: TARGETDB DBREF 2L0B A 12 91 UNP Q8NG27 PJA1_HUMAN 564 643 SEQADV 2L0B MET A 1 UNP Q8NG27 EXPRESSION TAG SEQADV 2L0B GLY A 2 UNP Q8NG27 EXPRESSION TAG SEQADV 2L0B HIS A 3 UNP Q8NG27 EXPRESSION TAG SEQADV 2L0B HIS A 4 UNP Q8NG27 EXPRESSION TAG SEQADV 2L0B HIS A 5 UNP Q8NG27 EXPRESSION TAG SEQADV 2L0B HIS A 6 UNP Q8NG27 EXPRESSION TAG SEQADV 2L0B HIS A 7 UNP Q8NG27 EXPRESSION TAG SEQADV 2L0B HIS A 8 UNP Q8NG27 EXPRESSION TAG SEQADV 2L0B SER A 9 UNP Q8NG27 EXPRESSION TAG SEQADV 2L0B HIS A 10 UNP Q8NG27 EXPRESSION TAG SEQADV 2L0B MET A 11 UNP Q8NG27 EXPRESSION TAG SEQADV 2L0B ASP A 54 UNP Q8NG27 GLU 606 CONFLICT SEQRES 1 A 91 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET VAL ALA SEQRES 2 A 91 ASN PRO PRO ALA SER LYS GLU SER ILE ASP ALA LEU PRO SEQRES 3 A 91 GLU ILE LEU VAL THR GLU ASP HIS GLY ALA VAL GLY GLN SEQRES 4 A 91 GLU MET CYS CYS PRO ILE CYS CYS SER GLU TYR VAL LYS SEQRES 5 A 91 GLY ASP VAL ALA THR GLU LEU PRO CYS HIS HIS TYR PHE SEQRES 6 A 91 HIS LYS PRO CYS VAL SER ILE TRP LEU GLN LYS SER GLY SEQRES 7 A 91 THR CYS PRO VAL CYS ARG CYS MET PHE PRO PRO PRO LEU HET ZN A 143 1 HET ZN A 161 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 SER A 18 ALA A 24 1 7 HELIX 2 2 LYS A 67 GLN A 75 1 9 SHEET 1 A 3 GLU A 27 LEU A 29 0 SHEET 2 A 3 VAL A 55 LEU A 59 -1 O ALA A 56 N ILE A 28 SHEET 3 A 3 HIS A 63 HIS A 66 -1 O HIS A 63 N LEU A 59 LINK SG CYS A 43 ZN ZN A 143 1555 1555 2.44 LINK SG CYS A 46 ZN ZN A 143 1555 1555 2.24 LINK SG CYS A 61 ZN ZN A 161 1555 1555 2.26 LINK ND1 HIS A 63 ZN ZN A 161 1555 1555 2.11 LINK ND1 HIS A 66 ZN ZN A 143 1555 1555 2.10 LINK SG CYS A 69 ZN ZN A 143 1555 1555 2.40 LINK SG CYS A 80 ZN ZN A 161 1555 1555 2.45 LINK SG CYS A 83 ZN ZN A 161 1555 1555 2.37 CISPEP 1 PHE A 87 PRO A 88 1 3.42 CISPEP 2 PHE A 87 PRO A 88 2 3.43 CISPEP 3 PHE A 87 PRO A 88 3 -0.80 CISPEP 4 PHE A 87 PRO A 88 4 -2.54 CISPEP 5 PHE A 87 PRO A 88 5 2.17 CISPEP 6 PHE A 87 PRO A 88 6 0.16 CISPEP 7 PHE A 87 PRO A 88 7 2.03 CISPEP 8 PHE A 87 PRO A 88 8 -1.99 CISPEP 9 PHE A 87 PRO A 88 9 -0.57 CISPEP 10 PHE A 87 PRO A 88 10 -0.89 CISPEP 11 PHE A 87 PRO A 88 11 2.81 CISPEP 12 PHE A 87 PRO A 88 12 2.14 CISPEP 13 PHE A 87 PRO A 88 13 1.19 CISPEP 14 PHE A 87 PRO A 88 14 -0.47 CISPEP 15 PHE A 87 PRO A 88 15 2.32 CISPEP 16 PHE A 87 PRO A 88 16 0.08 CISPEP 17 PHE A 87 PRO A 88 17 -0.52 CISPEP 18 PHE A 87 PRO A 88 18 2.79 CISPEP 19 PHE A 87 PRO A 88 19 -1.94 CISPEP 20 PHE A 87 PRO A 88 20 -2.33 SITE 1 AC1 4 CYS A 43 CYS A 46 HIS A 66 CYS A 69 SITE 1 AC2 4 CYS A 61 HIS A 63 CYS A 80 CYS A 83 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1