HEADER TRANSCRIPTION 08-JUL-10 2L0K TITLE NMR SOLUTION STRUCTURE OF A TRANSCRIPTION FACTOR SPOIIID IN COMPLEX TITLE 2 WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: STAGE III SPORULATION PROTEIN D; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 14 KDA TRANSCRIPTION FACTOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: SPOIIID, BSU36420; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-21B KEYWDS SPOIIID, NMR SOLUTION STRUCTURE, DNA BINDING, BACILLUS SUBTILIS, KEYWDS 2 TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.CHEN,P.HIMES,Z.LU,A.LIU,H.YAN,L.KROOS REVDAT 2 01-MAY-24 2L0K 1 REMARK REVDAT 1 17-AUG-11 2L0K 0 JRNL AUTH B.CHEN,P.HIMES,Y.LIU,Y.ZHANG,Z.LU,A.LIU,H.YAN,L.KROOS JRNL TITL NOVEL MODE OF DNA BINDING BY BACTERIAL TRANSCRIPTION FACTOR JRNL TITL 2 SPOIIID JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1, CYANA 2.1, CYANA 2.1, CYANA REMARK 3 2.1, CYANA 2.1, CYANA 2.1, CYANA 2.1, CYANA 2.1, REMARK 3 CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), CASE, REMARK 3 DARDEN, CHEATHAM, III, SIMMERLING, WANG, DUKE, LUO, REMARK 3 ... AND KOLLM (CYANA), ACCELRYS SOFTWARE INC. REMARK 3 (CYANA), KORADI, BILLETER AND WUTHRICH (CYANA), REMARK 3 DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (CYANA), JOHNSON, ONE MOON SCIENTIFIC (CYANA), REMARK 3 LASKOWSKI AND MACARTHUR (CYANA), CORNILESCU, REMARK 3 DELAGLIO AND BAX (CYANA), BRUKER BIOSPIN (CYANA), REMARK 3 VARIAN (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000101804. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 10 MM POTASSIUM PHOSPHATE-1, 100 REMARK 210 MM SODIUM CHLORIDE-2, 15 MM REMARK 210 SODIUM AZIDE-3, 0.05 MM DSS-4, REMARK 210 5.5 M [U-100% 2H] D2O-5, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HN(CO)CA; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D HCCH- REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 43 -74.16 -122.28 REMARK 500 1 ASP A 82 -169.99 -65.02 REMARK 500 1 PRO A 89 -175.15 -69.73 REMARK 500 2 GLU A 43 -73.18 -122.86 REMARK 500 3 GLU A 43 -74.59 -120.86 REMARK 500 3 PRO A 89 -171.46 -69.75 REMARK 500 4 GLU A 43 -73.71 -121.94 REMARK 500 4 PRO A 89 -172.89 -69.77 REMARK 500 5 GLU A 43 -74.34 -122.81 REMARK 500 5 LYS A 80 -74.66 -76.71 REMARK 500 5 ASP A 82 165.25 61.69 REMARK 500 5 PRO A 89 -171.00 -69.82 REMARK 500 6 HIS A 2 47.42 -94.78 REMARK 500 6 GLU A 43 -74.05 -122.58 REMARK 500 6 PRO A 89 -175.91 -69.71 REMARK 500 7 GLU A 43 -74.72 -120.70 REMARK 500 7 GLU A 86 32.85 -96.00 REMARK 500 7 PRO A 89 -175.63 -69.77 REMARK 500 8 HIS A 2 -75.83 69.33 REMARK 500 8 GLU A 43 -73.62 -122.22 REMARK 500 8 LYS A 80 -67.90 -90.43 REMARK 500 8 PRO A 89 -172.07 -69.76 REMARK 500 8 VAL A 90 79.41 -109.86 REMARK 500 9 GLU A 43 -73.78 -121.63 REMARK 500 10 HIS A 2 39.34 -146.88 REMARK 500 10 GLU A 43 -73.51 -122.88 REMARK 500 10 PRO A 89 -175.29 -69.71 REMARK 500 10 GLN A 92 -75.82 -96.69 REMARK 500 11 GLU A 43 -74.13 -122.60 REMARK 500 11 LYS A 80 -62.56 -90.14 REMARK 500 11 PRO A 89 -171.84 -69.78 REMARK 500 11 GLN A 92 102.04 -166.75 REMARK 500 12 GLU A 43 -73.75 -121.64 REMARK 500 12 LYS A 80 -67.90 -90.68 REMARK 500 12 PRO A 89 -171.07 -69.80 REMARK 500 13 HIS A 2 -70.01 71.43 REMARK 500 13 GLU A 43 -74.41 -122.64 REMARK 500 13 ASP A 82 165.39 61.70 REMARK 500 13 PRO A 89 -178.01 -69.75 REMARK 500 14 GLU A 43 -74.53 -121.31 REMARK 500 14 ASP A 82 165.44 61.60 REMARK 500 14 GLU A 83 179.40 -59.24 REMARK 500 14 PRO A 89 -174.33 -69.70 REMARK 500 15 GLU A 43 -73.79 -121.45 REMARK 500 15 GLU A 83 171.27 -58.59 REMARK 500 15 PRO A 89 -170.96 -69.77 REMARK 500 16 GLU A 43 -74.60 -121.60 REMARK 500 16 LYS A 80 -68.23 -90.21 REMARK 500 16 PRO A 89 -172.01 -69.74 REMARK 500 16 GLN A 92 67.10 -165.35 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2L0K A 1 93 UNP P15281 SP3D_BACSU 1 93 SEQRES 1 A 93 MET HIS ASP TYR ILE LYS GLU ARG THR ILE LYS ILE GLY SEQRES 2 A 93 LYS TYR ILE VAL GLU THR LYS LYS THR VAL ARG VAL ILE SEQRES 3 A 93 ALA LYS GLU PHE GLY VAL SER LYS SER THR VAL HIS LYS SEQRES 4 A 93 ASP LEU THR GLU ARG LEU PRO GLU ILE ASN PRO ASP LEU SEQRES 5 A 93 ALA ASN GLU VAL LYS GLU ILE LEU ASP TYR HIS LYS SER SEQRES 6 A 93 ILE ARG HIS LEU ARG GLY GLY GLU ALA THR LYS LEU LYS SEQRES 7 A 93 TYR LYS LYS ASP GLU ILE LEU GLU GLY GLU PRO VAL GLN SEQRES 8 A 93 GLN SER HELIX 1 1 TYR A 4 LYS A 20 1 17 HELIX 2 2 THR A 22 GLY A 31 1 10 HELIX 3 3 SER A 33 THR A 42 1 10 HELIX 4 4 GLU A 43 ASN A 49 1 7 HELIX 5 5 ASN A 49 ILE A 66 1 18 HELIX 6 6 ILE A 66 LYS A 81 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1