HEADER TRANSCRIPTION REGULATOR 22-JUL-10 2L11 TITLE SOLUTION NMR STRUCTURE OF THE CBX3 IN COMPLEX WITH H3K9ME3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMOBOX PROTEIN HOMOLOG 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 29-81; COMPND 5 SYNONYM: HETEROCHROMATIN PROTEIN 1 HOMOLOG GAMMA, HP1 GAMMA, MODIFIER COMPND 6 2 PROTEIN, HECH; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H3; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 2-16; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CBX3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A-MHL; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 13 ORGANISM_COMMON: CLAWED FROG,COMMON PLATANNA,PLATANNA; SOURCE 14 ORGANISM_TAXID: 8355; SOURCE 15 OTHER_DETAILS: H3K9ME3 15-MER PEPTIDE KEYWDS CHROMODOMAIN, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 2 SGC, TRANSCRIPTION REGULATOR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.KAUSTOV,A.LEMAK,C.FARES,A.GUTMANAS,H.QUANG,P.LOPPNAU,J.MIN, AUTHOR 2 A.EDWARDS,C.ARROWSMITH,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 05-FEB-20 2L11 1 REMARK SEQADV LINK REVDAT 2 06-APR-11 2L11 1 JRNL REVDAT 1 04-AUG-10 2L11 0 JRNL AUTH L.KAUSTOV,H.OUYANG,M.AMAYA,A.LEMAK,N.NADY,S.DUAN,G.A.WASNEY, JRNL AUTH 2 Z.LI,M.VEDADI,M.SCHAPIRA,J.MIN,C.H.ARROWSMITH JRNL TITL RECOGNITION AND SPECIFICITY DETERMINANTS OF THE HUMAN CBX JRNL TITL 2 CHROMODOMAINS. JRNL REF J.BIOL.CHEM. V. 286 521 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21047797 JRNL DOI 10.1074/JBC.M110.191411 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ABACUS, CNS REMARK 3 AUTHORS : (ABACUS)-GRISHAEV (ABACUS), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L11 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000101821. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM SODIUM PHOSPHATE, 200 MM REMARK 210 SODIUM CHLORIDE, 2 MM DTT, 1 MM REMARK 210 TCEP, 0.5 MM PMSF, 1 MM REMARK 210 BENZAMIDINE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HNCA; REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY; 3D- REMARK 210 15N-NOESY; 3D-13C-NOESY; 3D -13C- REMARK 210 AROMATIC-NOESY; 13C/15N-FILTERED/ REMARK 210 EDITED NOESY; 3D ARO 1H-13C REMARK 210 NOESY; 3D-AROMATIC 1H-13C-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRPIPE, SPARKY REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 3 GLU A 2 -32.47 -153.85 REMARK 500 5 THR B 3 97.32 -65.16 REMARK 500 6 ASN A 15 -73.58 64.97 REMARK 500 6 THR B 3 83.56 -63.48 REMARK 500 6 M3L B 9 -166.27 -103.56 REMARK 500 6 THR B 11 75.85 50.81 REMARK 500 7 GLN B 5 19.00 -140.73 REMARK 500 7 THR B 11 31.28 -90.06 REMARK 500 8 GLN B 5 97.17 -62.72 REMARK 500 8 SER B 10 108.55 -59.89 REMARK 500 9 ASN A 15 -73.30 66.68 REMARK 500 9 ARG B 2 -49.85 76.19 REMARK 500 9 THR B 3 94.68 -54.13 REMARK 500 9 LYS B 14 -80.95 -157.91 REMARK 500 10 GLN A 53 -70.78 -73.76 REMARK 500 10 LYS B 14 -50.65 -161.46 REMARK 500 11 LYS B 14 -50.23 -169.20 REMARK 500 12 ASN A 15 -76.08 68.22 REMARK 500 12 SER B 10 88.39 -67.69 REMARK 500 12 LYS B 14 76.20 -166.99 REMARK 500 13 GLU A 2 -73.20 -149.48 REMARK 500 13 ASN A 15 -71.70 66.55 REMARK 500 13 ARG B 2 63.07 -158.24 REMARK 500 13 M3L B 9 -102.73 -121.79 REMARK 500 14 GLN B 5 84.77 59.59 REMARK 500 15 GLU A 2 -86.12 -111.72 REMARK 500 15 SER B 10 -63.01 72.06 REMARK 500 16 SER B 10 93.31 -56.00 REMARK 500 18 THR B 3 75.95 55.88 REMARK 500 18 SER B 10 118.62 -173.82 REMARK 500 19 SER B 10 94.33 -68.11 REMARK 500 20 SER B 10 100.19 -167.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17071 RELATED DB: BMRB DBREF 2L11 A 2 54 UNP Q13185 CBX3_HUMAN 29 81 DBREF 2L11 B 1 15 UNP Q92133 Q92133_XENLA 2 16 SEQADV 2L11 GLY A 1 UNP Q13185 EXPRESSION TAG SEQRES 1 A 54 GLY GLU PHE VAL VAL GLU LYS VAL LEU ASP ARG ARG VAL SEQRES 2 A 54 VAL ASN GLY LYS VAL GLU TYR PHE LEU LYS TRP LYS GLY SEQRES 3 A 54 PHE THR ASP ALA ASP ASN THR TRP GLU PRO GLU GLU ASN SEQRES 4 A 54 LEU ASP CYS PRO GLU LEU ILE GLU ALA PHE LEU ASN SER SEQRES 5 A 54 GLN LYS SEQRES 1 B 15 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY SEQRES 2 B 15 LYS ALA MODRES 2L11 M3L B 9 LYS N-TRIMETHYLLYSINE HET M3L B 9 31 HETNAM M3L N-TRIMETHYLLYSINE FORMUL 2 M3L C9 H21 N2 O2 1+ HELIX 1 1 CYS A 42 LYS A 54 1 13 SHEET 1 A 4 TRP A 34 PRO A 36 0 SHEET 2 A 4 LYS A 17 TRP A 24 -1 N TYR A 20 O GLU A 35 SHEET 3 A 4 GLU A 2 VAL A 14 -1 N LEU A 9 O PHE A 21 SHEET 4 A 4 GLN B 5 ARG B 8 -1 O GLN B 5 N VAL A 5 LINK C ARG B 8 N M3L B 9 1555 1555 1.34 LINK C M3L B 9 N SER B 10 1555 1555 1.34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1