data_2L2X # _entry.id 2L2X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2L2X RCSB RCSB101889 WWPDB D_1000101889 # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 1E9W PDB . unspecified 2JQ7 PDB . unspecified 2L2W PDB . unspecified 2L2Y PDB . unspecified 2L2Z PDB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2L2X _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-08-27 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jonker, H.R.A.' 1 'Baumann, S.' 2 'Wolf, A.' 3 'Schoof, S.' 4 'Hiller, F.' 5 'Schulte, K.W.' 6 'Kirschner, K.N.' 7 'Schwalbe, H.' 8 'Arndt, H.-D.' 9 # _citation.id primary _citation.title 'NMR structures of thiostrepton derivatives for characterization of the ribosomal binding site.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 50 _citation.page_first 3308 _citation.page_last 3312 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21365717 _citation.pdbx_database_id_DOI 10.1002/anie.201003582 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Jonker, H.R.' 1 primary 'Baumann, S.' 2 primary 'Wolf, A.' 3 primary 'Schoof, S.' 4 primary 'Hiller, F.' 5 primary 'Schulte, K.W.' 6 primary 'Kirschner, K.N.' 7 primary 'Schwalbe, H.' 8 primary 'Arndt, H.D.' 9 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description Thiostrepton _entity.formula_weight 1734.907 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation '(DCY)9(BB9)' _entity.pdbx_fragment 'residues 1-16' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Alaninamide, Bryamycin, Gargon, Thiactin' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(QUA)IA(DHA)AS(BB9)T(DBU)(BB9)(TS9)(BB9)T(BB9)(MH6)(BB9)(DHA)(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XIASASCTTCXCTCXCSX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 QUA n 1 2 ILE n 1 3 ALA n 1 4 DHA n 1 5 ALA n 1 6 SER n 1 7 BB9 n 1 8 THR n 1 9 DBU n 1 10 BB9 n 1 11 TS9 n 1 12 BB9 n 1 13 THR n 1 14 BB9 n 1 15 MH6 n 1 16 BB9 n 1 17 DHA n 1 18 NH2 n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Streptomyces azureus' _entity_src_nat.pdbx_ncbi_taxonomy_id 146537 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code THCL_STRAJ _struct_ref.pdbx_db_accession P0C8P8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code IASASCTTCICTCSCS _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2L2X _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 17 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0C8P8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 16 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 16 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2L2X QUA A 1 ? UNP P0C8P8 ? ? 'SEE REMARK 999' 0 1 1 2L2X NH2 A 18 ? UNP P0C8P8 ? ? AMIDATION 17 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 BB9 'peptide linking' n '(2Z)-2-amino-3-sulfanylprop-2-enoic acid' ? 'C3 H5 N O2 S' 119.142 DBU 'peptide linking' n '(2Z)-2-AMINOBUT-2-ENOIC ACID' Z-DEHYDROBUTYRINE 'C4 H7 N O2' 101.104 DHA 'peptide linking' n '2-AMINO-ACRYLIC ACID' 2,3-DIDEHYDROALANINE 'C3 H5 N O2' 87.077 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 MH6 'peptide linking' n '3-hydroxy-2-iminopropanoic acid' ? 'C3 H5 N O3' 103.077 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 QUA non-polymer . '8-HYDROXY-4-(1-HYDROXYETHYL)QUINOLINE-2-CARBOXYLIC ACID' ? 'C12 H13 N O4' 235.236 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TS9 'L-peptide linking' n '(2S,3S,4R)-2-amino-3,4-dihydroxy-3-methylpentanoic acid' ? 'C6 H13 N O4' 163.172 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '2D 1H-13C TOCSY-HSQC' 1 4 1 '2D 1H-13C HMBC' 1 5 1 '2D 1H-1H NOESY' 1 6 1 '2D 1H-1H ROESY' 1 7 1 '2D 1H-1H TOCSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH . _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '10 mM thiostrepton (BB9, 9), chloroform-d/ethanol-d5 5:1' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system 'chloroform-d/ethanol-d5 5:1' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker DRX' # _pdbx_nmr_refine.entry_id 2L2X _pdbx_nmr_refine.method 'simulated annealing, torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2L2X _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2L2X _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TOPSPIN 1.3 1 'Bruker Biospin' processing TOPSPIN 1.3 2 Goddard 'peak picking' SPARKY 3.113 3 Goddard 'chemical shift assignment' SPARKY 3.113 4 Goddard 'data analysis' SPARKY 3.113 5 ;Linge, O'Donoghue and Nilges ; refinement ARIA 1.2 6 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS 1.1 7 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'Thiostrepton derivative (oxidized at CA-CB bond, residue BB9 9, in 5:1 chloroform-d ethanol-d5)' _exptl.entry_id 2L2X _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2L2X _struct.title 'Thiostrepton, oxidized at CA-CB bond of residue 9' _struct.pdbx_descriptor 'thiostrepton (BB9 9)' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2L2X _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'Natural antibiotic, Thiopeptide, Antibiotic, Antimicrobial, ANTIBACTERIAL, thiazole, thiazoline' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 3 C ? ? ? 1_555 A DHA 4 N ? ? A ALA 2 A DHA 3 1_555 ? ? ? ? ? ? ? 1.335 ? covale2 covale ? ? A DHA 4 C ? ? ? 1_555 A ALA 5 N ? ? A DHA 3 A ALA 4 1_555 ? ? ? ? ? ? ? 1.332 ? covale3 covale ? ? A SER 6 C ? ? ? 1_555 A BB9 7 N ? ? A SER 5 A BB9 6 1_555 ? ? ? ? ? ? ? 1.297 ? covale4 covale ? ? A BB9 7 C ? ? ? 1_555 A THR 8 N ? ? A BB9 6 A THR 7 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale ? ? A THR 8 C ? ? ? 1_555 A DBU 9 N ? ? A THR 7 A DBU 8 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? A DBU 9 C ? ? ? 1_555 A BB9 10 N ? ? A DBU 8 A BB9 9 1_555 ? ? ? ? ? ? ? 1.293 ? covale7 covale ? ? A TS9 11 C ? ? ? 1_555 A BB9 12 N ? ? A TS9 10 A BB9 11 1_555 ? ? ? ? ? ? ? 1.295 ? covale8 covale ? ? A BB9 12 C ? ? ? 1_555 A THR 13 N ? ? A BB9 11 A THR 12 1_555 ? ? ? ? ? ? ? 1.332 ? covale9 covale ? ? A THR 13 C ? ? ? 1_555 A BB9 14 N ? ? A THR 12 A BB9 13 1_555 ? ? ? ? ? ? ? 1.293 ? covale10 covale ? ? A MH6 15 C ? ? ? 1_555 A BB9 16 N ? ? A MH6 14 A BB9 15 1_555 ? ? ? ? ? ? ? 1.291 ? covale11 covale ? ? A BB9 16 C ? ? ? 1_555 A DHA 17 N ? ? A BB9 15 A DHA 16 1_555 ? ? ? ? ? ? ? 1.334 ? covale12 covale ? ? A QUA 1 C11 ? ? ? 1_555 A THR 13 OG1 ? ? A QUA 0 A THR 12 1_555 ? ? ? ? ? ? ? 1.332 ? covale13 covale ? ? A QUA 1 C7 ? ? ? 1_555 A ILE 2 N ? ? A QUA 0 A ILE 1 1_555 ? ? ? ? ? ? ? 1.494 ? covale14 covale ? ? A SER 6 CB ? ? ? 1_555 A MH6 15 CB ? ? A SER 5 A MH6 14 1_555 ? ? ? ? ? ? ? 1.524 ? covale15 covale ? ? A SER 6 CA ? ? ? 1_555 A BB9 14 C ? ? A SER 5 A BB9 13 1_555 ? ? ? ? ? ? ? 1.574 ? covale16 covale ? ? A TS9 11 C ? ? ? 1_555 A BB9 12 SG ? ? A TS9 10 A BB9 11 1_555 ? ? ? ? ? ? ? 1.720 ? covale17 covale ? ? A THR 13 C ? ? ? 1_555 A BB9 14 SG ? ? A THR 12 A BB9 13 1_555 ? ? ? ? ? ? ? 1.720 ? covale18 covale ? ? A MH6 15 C ? ? ? 1_555 A BB9 16 SG ? ? A MH6 14 A BB9 15 1_555 ? ? ? ? ? ? ? 1.720 ? covale19 covale ? ? A SER 6 C ? ? ? 1_555 A BB9 7 SG ? ? A SER 5 A BB9 6 1_555 ? ? ? ? ? ? ? 1.725 ? covale20 covale ? ? A DBU 9 C ? ? ? 1_555 A BB9 10 SG ? ? A DBU 8 A BB9 9 1_555 ? ? ? ? ? ? ? 1.722 ? covale21 covale ? ? A BB9 10 C ? ? ? 1_555 A TS9 11 N ? ? A BB9 9 A TS9 10 1_555 ? ? ? ? ? ? ? 1.331 ? covale22 covale ? ? A BB9 14 C ? ? ? 1_555 A MH6 15 N ? ? A BB9 13 A MH6 14 1_555 ? ? ? ? ? ? ? 1.473 ? covale23 covale ? ? A DHA 17 C ? ? ? 1_555 A NH2 18 N ? ? A DHA 16 A NH2 17 1_555 ? ? ? ? ? ? ? 1.327 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2L2X _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 QUA 1 0 0 QUA QUA A . n A 1 2 ILE 2 1 1 ILE ILE A . n A 1 3 ALA 3 2 2 ALA ALA A . n A 1 4 DHA 4 3 3 DHA DHA A . n A 1 5 ALA 5 4 4 ALA ALA A . n A 1 6 SER 6 5 5 SER SER A . n A 1 7 BB9 7 6 6 BB9 BB9 A . n A 1 8 THR 8 7 7 THR THR A . n A 1 9 DBU 9 8 8 DBU DBU A . n A 1 10 BB9 10 9 9 BB9 BB9 A . n A 1 11 TS9 11 10 10 TS9 TS9 A . n A 1 12 BB9 12 11 11 BB9 BB9 A . n A 1 13 THR 13 12 12 THR THR A . n A 1 14 BB9 14 13 13 BB9 BB9 A . n A 1 15 MH6 15 14 14 MH6 MH6 A . n A 1 16 BB9 16 15 15 BB9 BB9 A . n A 1 17 DHA 17 16 16 DHA DHA A . n A 1 18 NH2 18 17 16 NH2 DHA A . n # _pdbx_molecule_features.prd_id PRD_000760 _pdbx_molecule_features.name 'THIOPEPTIDE THIOSTREPTON OXIDIZED AT CA-CB BOND OF RESIDUE 9' _pdbx_molecule_features.type Thiopeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;THIOSTREPTON IS A HETEROCYCLIC THIOPEPTIDE, CONSISTING OF FOUR THIAZOLES ONE THIOZOLINE ONE PIPERIDEINE RINGS. A MODIFIED QUINOLINE LINKED TO MAIN-CHAIN RESIDUE 1 AND SIDE-CHAIN OF RESIDUE 12. IN THIS ENTRY RESIDUE 9 WAS CHEMICALLY MODIFIED: THE CA-CB BOND WAS OXIDIZED FROM SINGLE TO DOUBLE. RESIDUE 17 (HET DHA) WAS DELETED. ; # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000760 _pdbx_molecule.asym_id A # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A DHA 4 A DHA 3 ? SER '2-AMINO-ACRYLIC ACID' 2 A BB9 7 A BB9 6 ? CYS ? 3 A DBU 9 A DBU 8 ? THR '(2E)-2-AMINOBUT-2-ENOIC ACID' 4 A BB9 10 A BB9 9 ? CYS ? 5 A TS9 11 A TS9 10 ? ILE ? 6 A BB9 12 A BB9 11 ? CYS ? 7 A BB9 14 A BB9 13 ? CYS ? 8 A MH6 15 A MH6 14 ? SER '3-HYDROXY-2-IMINOPROPANOIC ACID' 9 A BB9 16 A BB9 15 ? CYS ? 10 A DHA 17 A DHA 16 ? SER '2-AMINO-ACRYLIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-12-12 4 'Structure model' 1 3 2013-06-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Other 3 4 'Structure model' 'Database references' # _pdbx_entry_details.entry_id 2L2X _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;A MODIFIED QUINOLINE LINKED TO THE MAIN-CHAIN OF RESIDUE 1 AND THE SIDE-CHAIN OF RESIDUE 12. THE RESIDUE 9 IS BB9. THE CA-CB BOND OF THE RESIDUE DCY 9 OF THE THIOSTREPTON HAS BEEN CHEMICALLY MODIFIED. IT HAS BEEN OXIDIZED FROM SINGLE TO DOUBLE. ; _pdbx_entry_details.compound_details ;THIOSTREPTON IS A MEMBER OF A SULPHUR-RICH HETEROCYCLIC PEPTIDES CLASS. ALL SHARE A MACROCYCLIC CORE, CONSISTING OF A NITROGEN CONTAINING, SIX-MEMBERED RING CENTRAL TO DEHYDROAMINO ACIDS AND A SUBSET OF FIVE MEMBER RING STRUCTURES INCLUDING THIAZOLES, THIAZOLINES AND OXAZOLES. HERE, THIOSTREPTON IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? # _pdbx_nmr_exptl_sample.component 'thiostrepton (BB9,9)' _pdbx_nmr_exptl_sample.concentration 10 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2L2X _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 167 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 63 _pdbx_nmr_constraints.NOE_long_range_total_count 47 _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 49 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 2 C A BB9 13 ? ? N A MH6 14 ? ? 1.474 1.336 0.138 0.023 Y 2 11 C A BB9 13 ? ? N A MH6 14 ? ? 1.474 1.336 0.138 0.023 Y 3 13 C A BB9 13 ? ? N A MH6 14 ? ? 1.474 1.336 0.138 0.023 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.69 117.20 -13.51 2.20 Y 2 2 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.89 117.20 -13.31 2.20 Y 3 3 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.63 117.20 -13.57 2.20 Y 4 4 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.86 117.20 -13.34 2.20 Y 5 5 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.68 117.20 -13.52 2.20 Y 6 6 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.81 117.20 -13.39 2.20 Y 7 7 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.80 117.20 -13.40 2.20 Y 8 8 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.81 117.20 -13.39 2.20 Y 9 9 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.83 117.20 -13.37 2.20 Y 10 10 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.72 117.20 -13.48 2.20 Y 11 11 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.76 117.20 -13.44 2.20 Y 12 12 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.77 117.20 -13.43 2.20 Y 13 13 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.73 117.20 -13.47 2.20 Y 14 14 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.65 117.20 -13.55 2.20 Y 15 15 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.77 117.20 -13.43 2.20 Y 16 16 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.82 117.20 -13.38 2.20 Y 17 17 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.89 117.20 -13.31 2.20 Y 18 18 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.84 117.20 -13.36 2.20 Y 19 19 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.64 117.20 -13.56 2.20 Y 20 20 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.71 117.20 -13.49 2.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 5 ? ? 65.56 84.00 2 2 ALA A 2 ? ? -160.95 112.35 3 2 SER A 5 ? ? 65.30 84.59 4 3 SER A 5 ? ? 64.16 82.10 5 4 SER A 5 ? ? 66.59 84.98 6 5 SER A 5 ? ? 65.88 83.36 7 5 TS9 A 10 ? ? -93.41 -61.44 8 6 SER A 5 ? ? 65.92 84.77 9 7 SER A 5 ? ? 66.35 85.78 10 7 TS9 A 10 ? ? -91.01 -61.82 11 8 SER A 5 ? ? 66.28 84.92 12 9 ALA A 2 ? ? -162.39 110.76 13 9 SER A 5 ? ? 65.85 84.32 14 10 SER A 5 ? ? 64.84 83.64 15 11 SER A 5 ? ? 64.57 84.06 16 12 SER A 5 ? ? 65.28 83.90 17 13 SER A 5 ? ? 66.13 83.21 18 14 SER A 5 ? ? 65.89 83.88 19 15 SER A 5 ? ? 65.01 84.32 20 15 TS9 A 10 ? ? -92.18 -60.09 21 16 SER A 5 ? ? 66.43 86.20 22 17 SER A 5 ? ? 65.82 83.66 23 18 SER A 5 ? ? 64.62 84.08 24 19 SER A 5 ? ? 64.60 83.86 25 20 ALA A 2 ? ? -160.30 115.38 26 20 SER A 5 ? ? 66.10 84.79 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 13 _pdbx_validate_peptide_omega.auth_comp_id_1 BB9 _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 13 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 MH6 _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 14 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 148.72 #