data_2L2Y # _entry.id 2L2Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2L2Y RCSB RCSB101890 WWPDB D_1000101890 # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 1E9W PDB . unspecified 2JQ7 PDB . unspecified 2L2W PDB . unspecified 2L2X PDB . unspecified 2L2Z PDB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2L2Y _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-08-27 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jonker, H.R.A.' 1 'Baumann, S.' 2 'Wolf, A.' 3 'Schoof, S.' 4 'Hiller, F.' 5 'Schulte, K.W.' 6 'Kirschner, K.N.' 7 'Schwalbe, H.' 8 'Arndt, H.-D.' 9 # _citation.id primary _citation.title 'NMR structures of thiostrepton derivatives for characterization of the ribosomal binding site.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 50 _citation.page_first 3308 _citation.page_last 3312 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21365717 _citation.pdbx_database_id_DOI 10.1002/anie.201003582 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Jonker, H.R.' 1 primary 'Baumann, S.' 2 primary 'Wolf, A.' 3 primary 'Schoof, S.' 4 primary 'Hiller, F.' 5 primary 'Schulte, K.W.' 6 primary 'Kirschner, K.N.' 7 primary 'Schwalbe, H.' 8 primary 'Arndt, H.D.' 9 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description Thiostrepton _entity.formula_weight 1736.923 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation '(DCY)9C' _entity.pdbx_fragment 'residues 1-16' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Alaninamide, Bryamycin, Gargon, Thiactin' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(QUA)IA(DHA)AS(BB9)T(DBU)C(TS9)(BB9)T(BB9)(MH6)(BB9)(DHA)(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XIASASCTTCXCTCXCSX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 QUA n 1 2 ILE n 1 3 ALA n 1 4 DHA n 1 5 ALA n 1 6 SER n 1 7 BB9 n 1 8 THR n 1 9 DBU n 1 10 CYS n 1 11 TS9 n 1 12 BB9 n 1 13 THR n 1 14 BB9 n 1 15 MH6 n 1 16 BB9 n 1 17 DHA n 1 18 NH2 n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Streptomyces azureus' _entity_src_nat.pdbx_ncbi_taxonomy_id 146537 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code THCL_STRAJ _struct_ref.pdbx_db_accession P0C8P8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code IASASCTTCICTCSCS _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2L2Y _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 17 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0C8P8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 16 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 16 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2L2Y QUA A 1 ? UNP P0C8P8 ? ? 'SEE REMARK 999' 0 1 1 2L2Y NH2 A 18 ? UNP P0C8P8 ? ? AMIDATION 17 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 BB9 'peptide linking' n '(2Z)-2-amino-3-sulfanylprop-2-enoic acid' ? 'C3 H5 N O2 S' 119.142 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DBU 'peptide linking' n '(2Z)-2-AMINOBUT-2-ENOIC ACID' Z-DEHYDROBUTYRINE 'C4 H7 N O2' 101.104 DHA 'peptide linking' n '2-AMINO-ACRYLIC ACID' 2,3-DIDEHYDROALANINE 'C3 H5 N O2' 87.077 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 MH6 'peptide linking' n '3-hydroxy-2-iminopropanoic acid' ? 'C3 H5 N O3' 103.077 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 QUA non-polymer . '8-HYDROXY-4-(1-HYDROXYETHYL)QUINOLINE-2-CARBOXYLIC ACID' ? 'C12 H13 N O4' 235.236 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TS9 'L-peptide linking' n '(2S,3S,4R)-2-amino-3,4-dihydroxy-3-methylpentanoic acid' ? 'C6 H13 N O4' 163.172 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '2D 1H-13C TOCSY-HSQC' 1 4 1 '2D 1H-13C HMBC' 1 5 1 '2D 1H-1H NOESY' 1 6 1 '2D 1H-1H ROESY' 1 7 1 '2D 1H-1H TOCSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH ? _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '10 mM thiostrepton (epi,9), chloroform-d/ethanol-d5 5:1' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system 'chloroform-d/ethanol-d5 5:1' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker DRX' # _pdbx_nmr_refine.entry_id 2L2Y _pdbx_nmr_refine.method 'simulated annealing, torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2L2Y _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2L2Y _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TOPSPIN 1.3 1 'Bruker Biospin' processing TOPSPIN 1.3 2 Goddard 'peak picking' SPARKY 3.113 3 Goddard 'chemical shift assignment' SPARKY 3.113 4 Goddard 'data analysis' SPARKY 3.113 5 ;Linge, O'Donoghue and Nilges ; refinement ARIA 1.2 6 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS 1.1 7 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'Thiostrepton derivative (epimer form of residue thc9:c5, in 5:1 chloroform-d ethanol-d5)' _exptl.entry_id 2L2Y _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2L2Y _struct.title 'Thiostrepton, epimer form of residue 9' _struct.pdbx_descriptor 'thiostrepton (epi,9)' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2L2Y _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'Natural antibiotic, Thiopeptide, Antibiotic, Antimicrobial, ANTIBACTERIAL, thiazole, thiazoline' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 3 C ? ? ? 1_555 A DHA 4 N ? ? A ALA 2 A DHA 3 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? A DHA 4 C ? ? ? 1_555 A ALA 5 N ? ? A DHA 3 A ALA 4 1_555 ? ? ? ? ? ? ? 1.321 ? covale3 covale ? ? A SER 6 C ? ? ? 1_555 A BB9 7 N ? ? A SER 5 A BB9 6 1_555 ? ? ? ? ? ? ? 1.296 ? covale4 covale ? ? A BB9 7 C ? ? ? 1_555 A THR 8 N ? ? A BB9 6 A THR 7 1_555 ? ? ? ? ? ? ? 1.334 ? covale5 covale ? ? A THR 8 C ? ? ? 1_555 A DBU 9 N ? ? A THR 7 A DBU 8 1_555 ? ? ? ? ? ? ? 1.322 ? covale6 covale ? ? A DBU 9 C ? ? ? 1_555 A CYS 10 N ? ? A DBU 8 A CYS 9 1_555 ? ? ? ? ? ? ? 1.300 ? covale7 covale ? ? A TS9 11 C ? ? ? 1_555 A BB9 12 N ? ? A TS9 10 A BB9 11 1_555 ? ? ? ? ? ? ? 1.295 ? covale8 covale ? ? A BB9 12 C ? ? ? 1_555 A THR 13 N ? ? A BB9 11 A THR 12 1_555 ? ? ? ? ? ? ? 1.335 ? covale9 covale ? ? A THR 13 C ? ? ? 1_555 A BB9 14 N ? ? A THR 12 A BB9 13 1_555 ? ? ? ? ? ? ? 1.296 ? covale10 covale ? ? A MH6 15 C ? ? ? 1_555 A BB9 16 N ? ? A MH6 14 A BB9 15 1_555 ? ? ? ? ? ? ? 1.291 ? covale11 covale ? ? A BB9 16 C ? ? ? 1_555 A DHA 17 N ? ? A BB9 15 A DHA 16 1_555 ? ? ? ? ? ? ? 1.336 ? covale12 covale ? ? A QUA 1 C11 ? ? ? 1_555 A THR 13 OG1 ? ? A QUA 0 A THR 12 1_555 ? ? ? ? ? ? ? 1.332 ? covale13 covale ? ? A QUA 1 C7 ? ? ? 1_555 A ILE 2 N ? ? A QUA 0 A ILE 1 1_555 ? ? ? ? ? ? ? 1.491 ? covale14 covale ? ? A SER 6 CB ? ? ? 1_555 A MH6 15 CB ? ? A SER 5 A MH6 14 1_555 ? ? ? ? ? ? ? 1.529 ? covale15 covale ? ? A SER 6 CA ? ? ? 1_555 A BB9 14 C ? ? A SER 5 A BB9 13 1_555 ? ? ? ? ? ? ? 1.571 ? covale16 covale ? ? A TS9 11 C ? ? ? 1_555 A BB9 12 SG ? ? A TS9 10 A BB9 11 1_555 ? ? ? ? ? ? ? 1.718 ? covale17 covale ? ? A THR 13 C ? ? ? 1_555 A BB9 14 SG ? ? A THR 12 A BB9 13 1_555 ? ? ? ? ? ? ? 1.719 ? covale18 covale ? ? A MH6 15 C ? ? ? 1_555 A BB9 16 SG ? ? A MH6 14 A BB9 15 1_555 ? ? ? ? ? ? ? 1.720 ? covale19 covale ? ? A SER 6 C ? ? ? 1_555 A BB9 7 SG ? ? A SER 5 A BB9 6 1_555 ? ? ? ? ? ? ? 1.724 ? covale20 covale ? ? A DBU 9 C ? ? ? 1_555 A CYS 10 SG ? ? A DBU 8 A CYS 9 1_555 ? ? ? ? ? ? ? 1.732 ? covale21 covale ? ? A CYS 10 C ? ? ? 1_555 A TS9 11 N ? ? A CYS 9 A TS9 10 1_555 ? ? ? ? ? ? ? 1.331 ? covale22 covale ? ? A BB9 14 C ? ? ? 1_555 A MH6 15 N ? ? A BB9 13 A MH6 14 1_555 ? ? ? ? ? ? ? 1.468 ? covale23 covale ? ? A DHA 17 C ? ? ? 1_555 A NH2 18 N ? ? A DHA 16 A NH2 17 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2L2Y _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 QUA 1 0 0 QUA QUA A . n A 1 2 ILE 2 1 1 ILE ILE A . n A 1 3 ALA 3 2 2 ALA ALA A . n A 1 4 DHA 4 3 3 DHA DHA A . n A 1 5 ALA 5 4 4 ALA ALA A . n A 1 6 SER 6 5 5 SER SER A . n A 1 7 BB9 7 6 6 BB9 BB9 A . n A 1 8 THR 8 7 7 THR THR A . n A 1 9 DBU 9 8 8 DBU DBU A . n A 1 10 CYS 10 9 9 CYS CYS A . n A 1 11 TS9 11 10 10 TS9 TS9 A . n A 1 12 BB9 12 11 11 BB9 BB9 A . n A 1 13 THR 13 12 12 THR THR A . n A 1 14 BB9 14 13 13 BB9 BB9 A . n A 1 15 MH6 15 14 14 MH6 MH6 A . n A 1 16 BB9 16 15 15 BB9 BB9 A . n A 1 17 DHA 17 16 16 DHA DHA A . n A 1 18 NH2 18 17 17 NH2 NH2 A . n # _pdbx_molecule_features.prd_id PRD_000759 _pdbx_molecule_features.name 'THIOPEPTIDE THIOSTREPTON WITH EPIMER FORM OF RESIDUE 9' _pdbx_molecule_features.type Thiopeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;THIOSTREPTON IS A HETEROCYCLIC THIOPEPTIDE, CONSISTING OF FOUR THIAZOLES ONE THIOZOLINE ONE PIPERIDEINE RINGS. A MODIFIED QUINOLINE, RESIDUE 0, IS LINKED TO MAIN-CHAIN RESIDUE 1 AND SIDE-CHAIN OF RESIDUE 12. IN THIS ENTRY RESIDUE 9 WAS CHEMICALLY MODIFIED FROM D-CYS TO L-CYS AND RESIDUE 17 (HET DHA) WAS DELETED. ; # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000759 _pdbx_molecule.asym_id A # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A DHA 4 A DHA 3 ? SER '2-AMINO-ACRYLIC ACID' 2 A BB9 7 A BB9 6 ? CYS ? 3 A DBU 9 A DBU 8 ? THR '(2E)-2-AMINOBUT-2-ENOIC ACID' 4 A TS9 11 A TS9 10 ? ILE ? 5 A BB9 12 A BB9 11 ? CYS ? 6 A BB9 14 A BB9 13 ? CYS ? 7 A MH6 15 A MH6 14 ? SER '3-HYDROXY-2-IMINOPROPANOIC ACID' 8 A BB9 16 A BB9 15 ? CYS ? 9 A DHA 17 A DHA 16 ? SER '2-AMINO-ACRYLIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-12-12 4 'Structure model' 1 3 2013-06-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Other 3 4 'Structure model' 'Database references' # _pdbx_entry_details.entry_id 2L2Y _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;A MODIFIED QUINOLINE LINKED TO THE MAIN-CHAIN OF RESIDUE 1 AND THE SIDE-CHAIN OF RESIDUE 12. THE RESIDUE 9 HAS BEEN MODIFIED TO CYS. ; _pdbx_entry_details.compound_details ;THIOSTREPTON IS A MEMBER OF A SULPHUR-RICH HETEROCYCLIC PEPTIDES CLASS. ALL SHARE A MACROCYCLIC CORE, CONSISTING OF A NITROGEN CONTAINING, SIX-MEMBERED RING CENTRAL TO DEHYDROAMINO ACIDS AND A SUBSET OF FIVE MEMBER RING STRUCTURES INCLUDING THIAZOLES, THIAZOLINES AND OXAZOLES. HERE, THIOSTREPTON IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? # _pdbx_nmr_exptl_sample.component 'thiostrepton (epi,9)' _pdbx_nmr_exptl_sample.concentration 10 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2L2Y _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 170 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 68 _pdbx_nmr_constraints.NOE_long_range_total_count 42 _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 47 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 4 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.97 117.20 -13.23 2.20 Y 2 9 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.88 117.20 -13.32 2.20 Y 3 13 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.93 117.20 -13.27 2.20 Y 4 14 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.92 117.20 -13.28 2.20 Y 5 19 CA A BB9 13 ? ? C A BB9 13 ? ? N A MH6 14 ? ? 103.80 117.20 -13.40 2.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 2 ? ? -167.79 119.08 2 1 SER A 5 ? ? 67.03 79.29 3 1 CYS A 9 ? ? 145.38 22.39 4 2 SER A 5 ? ? 67.17 80.30 5 2 CYS A 9 ? ? 145.60 22.05 6 3 ALA A 2 ? ? -168.25 119.57 7 3 SER A 5 ? ? 67.17 79.73 8 3 CYS A 9 ? ? 145.48 24.89 9 4 ALA A 2 ? ? -170.02 115.50 10 4 SER A 5 ? ? 65.69 80.09 11 4 CYS A 9 ? ? 146.32 23.59 12 5 ALA A 2 ? ? -169.43 115.50 13 5 SER A 5 ? ? 66.71 79.27 14 5 CYS A 9 ? ? 145.73 14.95 15 6 ALA A 2 ? ? -168.33 116.65 16 6 SER A 5 ? ? 66.61 80.73 17 6 CYS A 9 ? ? 145.96 22.50 18 7 SER A 5 ? ? 66.25 79.86 19 7 CYS A 9 ? ? 145.71 26.16 20 8 ALA A 2 ? ? -168.04 116.98 21 8 SER A 5 ? ? 66.28 78.37 22 8 CYS A 9 ? ? 145.74 21.75 23 9 ALA A 2 ? ? -168.46 114.57 24 9 SER A 5 ? ? 66.06 77.77 25 9 CYS A 9 ? ? 146.12 15.59 26 10 ALA A 2 ? ? -169.63 115.50 27 10 SER A 5 ? ? 67.10 78.32 28 10 CYS A 9 ? ? 145.34 22.06 29 11 SER A 5 ? ? 65.85 81.44 30 11 CYS A 9 ? ? 146.13 24.56 31 12 ALA A 2 ? ? -169.24 119.01 32 12 SER A 5 ? ? 67.06 80.42 33 12 CYS A 9 ? ? 145.98 23.65 34 13 ALA A 2 ? ? -169.08 114.67 35 13 SER A 5 ? ? 65.83 78.41 36 13 CYS A 9 ? ? 144.93 16.72 37 14 SER A 5 ? ? 66.63 78.88 38 14 CYS A 9 ? ? 146.14 27.31 39 15 ALA A 2 ? ? -168.78 118.84 40 15 SER A 5 ? ? 66.83 78.98 41 15 CYS A 9 ? ? 145.77 15.08 42 16 SER A 5 ? ? 65.72 81.17 43 16 CYS A 9 ? ? 144.84 21.31 44 17 SER A 5 ? ? 67.52 81.42 45 17 CYS A 9 ? ? 146.42 25.87 46 18 ALA A 2 ? ? -168.35 117.75 47 18 SER A 5 ? ? 65.25 80.57 48 18 CYS A 9 ? ? 145.60 18.27 49 19 ALA A 2 ? ? -171.34 115.51 50 19 SER A 5 ? ? 65.65 78.46 51 19 CYS A 9 ? ? 145.84 26.35 52 20 ALA A 2 ? ? -166.32 119.79 53 20 SER A 5 ? ? 65.95 80.51 54 20 CYS A 9 ? ? 145.25 23.92 #