HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 10-SEP-10 2L3B TITLE SOLUTION NMR STRUCTURE OF THE BT_0084 LIPOPROTEIN FROM BACTEROIDES TITLE 2 THETAIOTAOMICRON, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 BTR376 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED PROTEIN FOUND IN CONJUGATE TRANSPOSON; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 27-147; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: BT_0084; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PMGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21-23C KEYWDS BETA, STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,Y.YANG,D.WANG,C.CICCOSANTI,H.JANJUA,T.B.ACTON,R.XIAO, AUTHOR 2 J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 9 26-JUL-23 2L3B 1 JRNL REVDAT 8 14-JUN-23 2L3B 1 REMARK REVDAT 7 05-FEB-20 2L3B 1 REMARK SEQADV REVDAT 6 06-MAR-13 2L3B 1 JRNL REVDAT 5 30-JAN-13 2L3B 1 JRNL REVDAT 4 18-JUL-12 2L3B 1 JRNL REVDAT 3 22-FEB-12 2L3B 1 KEYWDS REVDAT 2 14-DEC-11 2L3B 1 JRNL VERSN REVDAT 1 10-NOV-10 2L3B 0 JRNL AUTH T.A.RAMELOT,Y.YANG,R.XIAO,T.B.ACTON,J.K.EVERETT, JRNL AUTH 2 G.T.MONTELIONE,M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF BT_0084, A CONJUGATIVE TRANSPOSON JRNL TITL 2 LIPOPROTEIN FROM BACTEROIDES THETAIOTAMICRON. JRNL REF PROTEINS V. 80 667 2012 JRNL REFN ESSN 1097-0134 JRNL PMID 22116783 JRNL DOI 10.1002/PROT.23235 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE LINUX9, X-PLOR NIH 2.25 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CNS WATER REFINEMENT REMARK 4 REMARK 4 2L3B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000101903. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM MES, 100 MM SODIUM REMARK 210 CHLORIDE, 5 MM CALCIUM CHLORIDE, REMARK 210 10 MM DTT, 0.02 % SODIUM AZIDE, REMARK 210 1.0 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 95% H2O/5% D2O; 20 MM REMARK 210 MES, 100 MM SODIUM CHLORIDE, 5 REMARK 210 MM CALCIUM CHLORIDE, 10 MM DTT, REMARK 210 0.02 % SODIUM AZIDE, 1.0 MM [U- REMARK 210 100% 13C; U-100% 15N] PROTEIN, REMARK 210 100% D2O; 20 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 1.0 MM [U-5% 13C; REMARK 210 U-100% 15N] PROTEIN, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPH; 4D 1H-13C NOESY; 3D HNCO; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HCCH-TOCSY; 3D HCCH-COSY; 3D 1H- REMARK 210 13C NOESY AROM; (H)CCH-TOCSY; 3D REMARK 210 HN(CO)CA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, TOPSPIN 2.1.4, REMARK 210 AUTOSTRUCTURE 2.2.1, X-PLOR NIH REMARK 210 2.25, SPARKY 3.113, PSVS 1.4, REMARK 210 AUTOASSIGN 2.3.0, PDBSTAT 5.0, REMARK 210 CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 2 -48.75 -149.04 REMARK 500 1 ASP A 3 -3.17 66.23 REMARK 500 1 ARG A 41 -87.54 178.54 REMARK 500 1 PHE A 42 164.18 176.43 REMARK 500 1 ASP A 55 -73.68 -63.21 REMARK 500 1 SER A 118 -177.67 67.83 REMARK 500 1 HIS A 125 66.39 -111.04 REMARK 500 2 ASN A 2 -1.00 -170.17 REMARK 500 2 ASP A 3 -153.52 -89.59 REMARK 500 2 ASP A 39 -79.14 -121.36 REMARK 500 2 ARG A 41 101.86 62.98 REMARK 500 2 GLU A 43 -179.53 68.89 REMARK 500 2 ALA A 57 87.93 -158.97 REMARK 500 2 ASN A 71 -35.22 74.58 REMARK 500 2 ASP A 91 -165.51 -111.52 REMARK 500 2 ASN A 114 -67.15 80.00 REMARK 500 2 ASP A 116 -22.57 -140.67 REMARK 500 2 SER A 118 39.78 -90.32 REMARK 500 2 LYS A 119 -49.36 -169.58 REMARK 500 2 GLU A 124 109.14 58.55 REMARK 500 2 HIS A 125 48.99 -84.15 REMARK 500 2 HIS A 126 -24.82 71.29 REMARK 500 2 HIS A 127 87.24 63.64 REMARK 500 3 ASN A 2 -89.68 71.82 REMARK 500 3 ASP A 3 -65.21 -159.69 REMARK 500 3 TYR A 11 83.65 63.95 REMARK 500 3 PHE A 42 -150.33 -145.71 REMARK 500 3 ASN A 71 -52.68 77.33 REMARK 500 3 ASN A 114 88.02 62.25 REMARK 500 3 ASN A 115 -76.08 -65.72 REMARK 500 3 ASP A 116 -81.90 58.80 REMARK 500 3 SER A 117 93.39 68.72 REMARK 500 3 SER A 118 -71.05 -81.67 REMARK 500 3 GLU A 124 -42.59 -173.07 REMARK 500 4 GLU A 44 79.23 51.98 REMARK 500 4 ASP A 91 -166.13 -116.06 REMARK 500 4 ASN A 114 -72.81 -133.69 REMARK 500 4 ASN A 115 -26.97 -140.59 REMARK 500 4 SER A 118 91.14 70.04 REMARK 500 4 GLU A 122 -85.10 68.16 REMARK 500 4 GLU A 124 153.27 74.51 REMARK 500 4 HIS A 125 -141.18 -93.17 REMARK 500 4 HIS A 127 71.41 179.85 REMARK 500 4 HIS A 129 -45.84 -162.58 REMARK 500 5 ASP A 4 118.35 68.08 REMARK 500 5 VAL A 5 -81.25 69.05 REMARK 500 5 ASP A 6 -54.18 -179.78 REMARK 500 5 ASN A 115 101.94 179.21 REMARK 500 5 SER A 117 92.02 65.85 REMARK 500 5 HIS A 127 65.04 72.26 REMARK 500 REMARK 500 THIS ENTRY HAS 222 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17176 RELATED DB: BMRB REMARK 900 RELATED ID: BTR376 RELATED DB: TARGETDB DBREF 2L3B A 2 122 UNP Q8ABM6 Q8ABM6_BACTN 27 147 SEQADV 2L3B MET A 1 UNP Q8ABM6 INITIATING METHIONINE SEQADV 2L3B LEU A 123 UNP Q8ABM6 EXPRESSION TAG SEQADV 2L3B GLU A 124 UNP Q8ABM6 EXPRESSION TAG SEQADV 2L3B HIS A 125 UNP Q8ABM6 EXPRESSION TAG SEQADV 2L3B HIS A 126 UNP Q8ABM6 EXPRESSION TAG SEQADV 2L3B HIS A 127 UNP Q8ABM6 EXPRESSION TAG SEQADV 2L3B HIS A 128 UNP Q8ABM6 EXPRESSION TAG SEQADV 2L3B HIS A 129 UNP Q8ABM6 EXPRESSION TAG SEQADV 2L3B HIS A 130 UNP Q8ABM6 EXPRESSION TAG SEQRES 1 A 130 MET ASN ASP ASP VAL ASP ILE GLN GLN SER TYR PRO PHE SEQRES 2 A 130 SER ILE GLU THR MET PRO VAL PRO LYS LYS LEU LYS VAL SEQRES 3 A 130 GLY GLU THR ALA GLU ILE ARG CYS GLN LEU HIS ARG ASP SEQRES 4 A 130 GLY ARG PHE GLU GLU THR LYS TYR PHE ILE ARG TYR PHE SEQRES 5 A 130 GLN PRO ASP GLY ALA GLY THR LEU LYS MET SER ASP GLY SEQRES 6 A 130 THR VAL LEU LEU PRO ASN ASP LEU TYR PRO LEU PRO GLY SEQRES 7 A 130 GLU THR PHE ARG LEU TYR TYR THR SER ALA SER THR ASP SEQRES 8 A 130 GLN GLN THR VAL ASP VAL TYR PHE GLN ASP SER PHE GLY SEQRES 9 A 130 GLN LEU GLN GLN LEU THR PHE SER PHE ASN ASN ASP SER SEQRES 10 A 130 SER LYS GLU GLU GLU LEU GLU HIS HIS HIS HIS HIS HIS SHEET 1 A 5 SER A 14 THR A 17 0 SHEET 2 A 5 THR A 29 HIS A 37 -1 O HIS A 37 N SER A 14 SHEET 3 A 5 THR A 80 THR A 86 -1 O LEU A 83 N ILE A 32 SHEET 4 A 5 THR A 59 MET A 62 -1 N LYS A 61 O TYR A 84 SHEET 5 A 5 VAL A 67 LEU A 68 -1 O LEU A 68 N LEU A 60 SHEET 1 B 4 TYR A 74 PRO A 75 0 SHEET 2 B 4 PHE A 48 PHE A 52 -1 N ILE A 49 O TYR A 74 SHEET 3 B 4 GLN A 93 GLN A 100 -1 O TYR A 98 N ARG A 50 SHEET 4 B 4 LEU A 106 PHE A 113 -1 O PHE A 113 N GLN A 93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1