HEADER PHOTOSYNTHESIS 24-SEP-10 2L3W TITLE SOLUTION NMR STRUCTURE OF THE PBS LINKER DOMAIN OF PHYCOBILISOME ROD TITLE 2 LINKER POLYPEPTIDE FROM SYNECHOCOCCUS ELONGATUS, NORTHEAST STRUCTURAL TITLE 3 GENOMICS CONSORTIUM TARGET SNR168A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHYCOBILISOME ROD LINKER POLYPEPTIDE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 20-153; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 1140; SOURCE 4 STRAIN: PCC 7942; SOURCE 5 GENE: SYNPCC7942_1049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 21-23C KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, PHOTOSYNTHESIS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.ELETSKY,H.LEE,D.LEE,C.CICCOSANTI,K.HAMILTON,T.B.ACTON,R.XIAO, AUTHOR 2 J.K.EVERETT,J.H.PRESTEGARD,G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 01-MAY-24 2L3W 1 REMARK SEQADV REVDAT 2 22-FEB-12 2L3W 1 VERSN KEYWDS REVDAT 1 15-DEC-10 2L3W 0 JRNL AUTH A.ELETSKY,H.LEE,D.LEE,C.CICCOSANTI,K.HAMILTON,T.B.ACTON, JRNL AUTH 2 R.XIAO,J.K.EVERETT,J.H.PRESTEGARD,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF THE PBS LINKER DOMAIN OF JRNL TITL 2 PHYCOBILISOME ROD LINKER POLYPEPTIDE FROM SYNECHOCOCCUS JRNL TITL 3 ELONGATUS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET JRNL TITL 4 SNR168A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2, CYANA 3.0 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 BY RUNNING CYANA AND AUTOSTRUCTURE IN PARALLEL USING NOE-BASED REMARK 3 CONSTRAINTS AND PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS FROM REMARK 3 TALOS+. CONSENSUS PEAK ASSIGNMENTS WERE SELECTED AND USED IN REMARK 3 ITERATIVE REFINEMENT WITH CYANA, WITH RDC CONSTRAINTS ADDED AT REMARK 3 LATER STAGES. THE 20 CONFORMERS OUT OF 100 WITH THE LOWEST REMARK 3 TARGET FUNCTION WERE FURTHER REFINED BY SIMULATED ANNEALING IN REMARK 3 EXPLICIT WATER BATH USING THE PROGRAM CNS WITH PARAM19 FORCE REMARK 3 FIELD AND UPPER LIMIT CONSTRAINTS RELAXED BY 5% REMARK 4 REMARK 4 2L3W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000101924. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-100% 13C; U-100% 15N] REMARK 210 SNR168A, 20 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 0.7 MM [5% 13C; U-100% 15N] REMARK 210 SNR168A, 20 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 0.45 MM [5% 13C; U-100% 15N] REMARK 210 SNR168A, 13 MM MES, 160 MM REMARK 210 SODIUM CHLORIDE, 3.2 MM CALCIUM REMARK 210 CHLORIDE, 6.4 MM DTT, 0.025 % REMARK 210 SODIUM AZIDE, 2.4 MM POTASSIUM REMARK 210 PHOSPHATE, 0.5 MM MAGNESIUM REMARK 210 CHLORIDE, 13.2 G/L PF1 PHAGE, 85% REMARK 210 H2O/15% D2O; 0.46 MM [5% 13C; U- REMARK 210 100% 15N] SNR168A, 18 MM MES, 90 REMARK 210 MM SODIUM CHLORIDE, 4.5 MM REMARK 210 CALCIUM CHLORIDE, 9 MM DTT, 0.02 REMARK 210 % SODIUM AZIDE, 4 % C12E5 PEG, 4 REMARK 210 % HEXANOL, 85% H2O/15% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C CT REMARK 210 -HSQC ALIPHATIC; 2D 1H-13C CT- REMARK 210 HSQC AROMATIC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCACB; 3D HNCO; REMARK 210 3D SIMUTANEOUS 13C-AROMATIC,13C- REMARK 210 ALIPHATIC,15N EDITED 1H-1H NOESY; REMARK 210 3D HN(CA)CO; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D (H)CCH-COSY REMARK 210 ALIPHATIC; 3D (H)CCH-COSY REMARK 210 AROMATIC; 3D HCCH-TOCSY; 2D 1H- REMARK 210 15N LR-HSQC (HISTIDINE); 1D 1H- REMARK 210 15N HSQC T1; 1D 1H-15N HSQC T2; REMARK 210 2D 1H-13C CT-HSQC (METHYL); 2D REMARK 210 1H-15N J-MODULATED HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 750 MHZ; 700 MHZ; 600 REMARK 210 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.2, CYANA 3.0, REMARK 210 AUTOSTRUCTURE 2.2.1, AUTOASSIGN REMARK 210 2.3.0, NMRPIPE, XEASY, TOPSPIN, REMARK 210 VNMRJ, CARA 1.8.4, TALOS+, PROSA REMARK 210 6.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 29 29.67 49.95 REMARK 500 1 TYR A 30 -168.19 48.55 REMARK 500 1 ARG A 36 -96.34 58.83 REMARK 500 1 LEU A 37 40.19 -144.82 REMARK 500 1 GLU A 123 -65.17 68.08 REMARK 500 1 GLU A 137 118.59 -168.46 REMARK 500 1 HIS A 138 24.89 -141.26 REMARK 500 2 ASN A 28 -166.16 -77.57 REMARK 500 2 ASP A 29 30.31 -77.93 REMARK 500 2 TYR A 30 -157.00 44.57 REMARK 500 2 SER A 33 -14.76 78.67 REMARK 500 2 ARG A 36 -153.90 55.83 REMARK 500 2 PRO A 90 85.47 -63.63 REMARK 500 2 HIS A 141 -169.90 65.23 REMARK 500 3 LEU A 26 -70.84 -98.12 REMARK 500 3 ASP A 29 8.80 56.59 REMARK 500 3 TYR A 30 179.70 48.92 REMARK 500 3 SER A 33 46.79 73.79 REMARK 500 3 ARG A 36 -89.75 56.09 REMARK 500 3 LEU A 37 42.64 -154.97 REMARK 500 3 PRO A 90 86.76 -68.74 REMARK 500 3 LEU A 136 48.98 -140.71 REMARK 500 3 GLU A 137 33.69 -79.89 REMARK 500 3 HIS A 140 -76.38 63.04 REMARK 500 4 ASN A 28 -142.92 -74.19 REMARK 500 4 ASP A 29 -94.12 -72.65 REMARK 500 4 TYR A 30 174.39 179.16 REMARK 500 4 THR A 34 -158.83 -103.28 REMARK 500 4 GLU A 35 84.79 -66.97 REMARK 500 4 ARG A 134 -92.83 -78.57 REMARK 500 4 GLU A 137 -87.24 61.21 REMARK 500 4 HIS A 138 97.39 60.60 REMARK 500 4 HIS A 139 -161.68 -75.08 REMARK 500 4 HIS A 140 168.83 71.19 REMARK 500 4 HIS A 141 -75.55 65.70 REMARK 500 5 TYR A 30 -167.88 45.96 REMARK 500 5 VAL A 31 -76.56 -98.15 REMARK 500 5 MET A 32 -56.64 68.49 REMARK 500 5 SER A 33 79.91 -66.84 REMARK 500 5 THR A 34 -170.98 173.25 REMARK 500 5 HIS A 142 -68.51 65.01 REMARK 500 6 MET A 32 103.61 -51.09 REMARK 500 6 SER A 33 -46.52 171.40 REMARK 500 6 PRO A 90 93.55 -64.52 REMARK 500 6 LEU A 136 -82.35 61.38 REMARK 500 7 ASN A 28 -154.45 -87.22 REMARK 500 7 ASP A 29 46.74 -81.18 REMARK 500 7 TYR A 30 -155.44 40.57 REMARK 500 7 VAL A 31 -72.34 -118.43 REMARK 500 7 MET A 32 -72.26 61.73 REMARK 500 REMARK 500 THIS ENTRY HAS 166 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 8 ARG A 65 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SNR168A RELATED DB: TARGETDB DBREF 2L3W A 2 135 UNP Q31PE0 Q31PE0_SYNE7 20 153 SEQADV 2L3W MET A 1 UNP Q31PE0 INITIATING METHIONINE SEQADV 2L3W LEU A 136 UNP Q31PE0 EXPRESSION TAG SEQADV 2L3W GLU A 137 UNP Q31PE0 EXPRESSION TAG SEQADV 2L3W HIS A 138 UNP Q31PE0 EXPRESSION TAG SEQADV 2L3W HIS A 139 UNP Q31PE0 EXPRESSION TAG SEQADV 2L3W HIS A 140 UNP Q31PE0 EXPRESSION TAG SEQADV 2L3W HIS A 141 UNP Q31PE0 EXPRESSION TAG SEQADV 2L3W HIS A 142 UNP Q31PE0 EXPRESSION TAG SEQADV 2L3W HIS A 143 UNP Q31PE0 EXPRESSION TAG SEQRES 1 A 143 MET PRO LEU GLU TRP ARG ALA GLY ALA SER SER ASP GLU SEQRES 2 A 143 ILE ASN ALA ILE ILE ARG ALA VAL TYR ARG GLN VAL LEU SEQRES 3 A 143 GLY ASN ASP TYR VAL MET SER THR GLU ARG LEU THR SER SEQRES 4 A 143 ALA GLU SER LEU LEU ARG GLY GLY GLU ILE SER VAL ARG SEQRES 5 A 143 ASP PHE VAL ARG ALA VAL ALA LEU SER GLU LEU TYR ARG SEQRES 6 A 143 GLU LYS PHE PHE HIS ASN ASN ALA HIS ASN ARG PHE ILE SEQRES 7 A 143 GLU LEU ASN PHE LYS HIS LEU LEU GLY ARG ALA PRO TYR SEQRES 8 A 143 ASP GLN ALA GLU VAL ALA ALA HIS ALA ALA THR TYR HIS SEQRES 9 A 143 SER HIS GLY TYR ASP ALA ASP ILE ASN SER TYR ILE ASP SEQRES 10 A 143 SER ALA GLU TYR THR GLU SER PHE GLY ASP ASN VAL VAL SEQRES 11 A 143 PRO TYR PHE ARG GLY LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 SER A 10 GLY A 27 1 18 HELIX 2 2 LEU A 37 GLY A 46 1 10 HELIX 3 3 SER A 50 SER A 61 1 12 HELIX 4 4 SER A 61 PHE A 69 1 9 HELIX 5 5 ALA A 73 LEU A 86 1 14 HELIX 6 6 ASP A 92 HIS A 106 1 15 HELIX 7 7 GLY A 107 ASP A 117 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1