HEADER PROTEIN BINDING 29-SEP-10 2L42 TITLE THE SOLUTION STRUCTURE OF RAP1 BRCT DOMAIN FROM SACCHAROMYCES TITLE 2 CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN RAP1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRCT DOMAIN, UNP RESIDUES 116-212; COMPND 5 SYNONYM: REPRESSOR/ACTIVATOR SITE-BINDING PROTEIN, SBF-E, TUF; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: RAP1, GRF1, TUF1, YNL216W, N1310; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET22 KEYWDS RAP1, BRCT DOMAIN, DNA BINDING PROTEIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.ZHANG,J.ZHANG,X.TU REVDAT 3 01-MAY-24 2L42 1 REMARK SEQADV REVDAT 2 23-FEB-11 2L42 1 JRNL REVDAT 1 26-JAN-11 2L42 0 JRNL AUTH W.ZHANG,J.ZHANG,X.ZHANG,C.XU,X.TU JRNL TITL SOLUTION STRUCTURE OF RAP1 BRCT DOMAIN FROM SACCHAROMYCES JRNL TITL 2 CEREVISIAE REVEALS A NOVEL FOLD JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 404 1055 2011 JRNL REFN ISSN 0006-291X JRNL PMID 21187076 JRNL DOI 10.1016/J.BBRC.2010.12.109 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000101930. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.12 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM SODIUM PHOSPHATE-1, 100 MM REMARK 210 SODIUM CHLORIDE-2, 90% H2O/10% REMARK 210 D2O; 20 MM SODIUM PHOSPHATE-3, REMARK 210 100 MM SODIUM CHLORIDE-4, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCO; 3D HNCACB; REMARK 210 3D HBHA(CO)NH; 3D H(CCO)NH; 3D REMARK 210 1H-15N NOESY; 3D HCCH-COSY; 3D REMARK 210 HCCH-TOCSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LEU A 98 REMARK 465 GLU A 99 REMARK 465 HIS A 100 REMARK 465 HIS A 101 REMARK 465 HIS A 102 REMARK 465 HIS A 103 REMARK 465 HIS A 104 REMARK 465 HIS A 105 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 5 110.10 67.02 REMARK 500 1 VAL A 6 -51.26 -133.29 REMARK 500 1 SER A 12 102.22 61.60 REMARK 500 1 ASN A 13 -83.36 -142.73 REMARK 500 1 MET A 14 127.04 -179.39 REMARK 500 1 ARG A 20 -90.51 -68.01 REMARK 500 1 ASP A 21 44.11 174.45 REMARK 500 1 ALA A 24 156.68 168.63 REMARK 500 1 HIS A 25 -74.28 -174.11 REMARK 500 1 ASP A 26 -62.24 -143.63 REMARK 500 1 LEU A 28 -62.03 -135.67 REMARK 500 1 ARG A 51 34.60 -152.61 REMARK 500 1 THR A 66 105.00 49.60 REMARK 500 1 PRO A 69 -169.81 -74.29 REMARK 500 1 ASN A 83 -73.45 70.40 REMARK 500 1 SER A 84 36.16 -171.82 REMARK 500 1 LEU A 86 75.23 -156.67 REMARK 500 1 PRO A 94 165.27 -44.09 REMARK 500 2 LEU A 11 -163.03 -129.79 REMARK 500 2 ASN A 13 -73.46 -142.68 REMARK 500 2 MET A 14 136.52 -171.95 REMARK 500 2 LEU A 18 86.84 -157.60 REMARK 500 2 ASP A 23 -37.01 169.89 REMARK 500 2 ALA A 24 121.78 -170.72 REMARK 500 2 HIS A 25 -75.25 -125.15 REMARK 500 2 ASP A 26 -71.05 -163.83 REMARK 500 2 LEU A 28 -49.17 -146.94 REMARK 500 2 ARG A 51 -74.12 -124.49 REMARK 500 2 LYS A 54 24.20 -140.45 REMARK 500 2 THR A 66 99.10 57.96 REMARK 500 2 LEU A 68 -57.77 -132.92 REMARK 500 2 PRO A 69 -168.58 -72.23 REMARK 500 2 ASN A 83 -76.00 70.45 REMARK 500 2 SER A 84 37.24 -154.99 REMARK 500 2 LEU A 86 95.17 -172.18 REMARK 500 2 TYR A 95 -65.04 -138.58 REMARK 500 2 ASP A 96 77.09 -100.09 REMARK 500 3 GLU A 4 171.43 68.42 REMARK 500 3 GLN A 5 -43.81 -136.43 REMARK 500 3 SER A 12 90.26 44.93 REMARK 500 3 ASN A 13 -78.88 -147.58 REMARK 500 3 MET A 14 133.20 -171.40 REMARK 500 3 LEU A 18 73.98 -160.63 REMARK 500 3 ASP A 21 51.78 -96.12 REMARK 500 3 ALA A 24 156.30 173.39 REMARK 500 3 HIS A 25 -51.68 -174.26 REMARK 500 3 ASP A 26 -58.51 -169.96 REMARK 500 3 LEU A 28 -63.79 -140.90 REMARK 500 3 ARG A 51 -68.24 -153.05 REMARK 500 3 LYS A 54 26.67 -149.32 REMARK 500 REMARK 500 THIS ENTRY HAS 355 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17212 RELATED DB: BMRB DBREF 2L42 A 1 97 UNP P11938 RAP1_YEAST 116 212 SEQADV 2L42 MET A 0 UNP P11938 EXPRESSION TAG SEQADV 2L42 LEU A 98 UNP P11938 EXPRESSION TAG SEQADV 2L42 GLU A 99 UNP P11938 EXPRESSION TAG SEQADV 2L42 HIS A 100 UNP P11938 EXPRESSION TAG SEQADV 2L42 HIS A 101 UNP P11938 EXPRESSION TAG SEQADV 2L42 HIS A 102 UNP P11938 EXPRESSION TAG SEQADV 2L42 HIS A 103 UNP P11938 EXPRESSION TAG SEQADV 2L42 HIS A 104 UNP P11938 EXPRESSION TAG SEQADV 2L42 HIS A 105 UNP P11938 EXPRESSION TAG SEQRES 1 A 106 MET GLU LYS LYS GLU GLN VAL SER GLY PRO PRO LEU SER SEQRES 2 A 106 ASN MET LYS PHE TYR LEU ASN ARG ASP ALA ASP ALA HIS SEQRES 3 A 106 ASP SER LEU ASN ASP ILE ASP GLN LEU ALA ARG LEU ILE SEQRES 4 A 106 ARG ALA ASN GLY GLY GLU VAL LEU ASP SER LYS PRO ARG SEQRES 5 A 106 GLU SER LYS GLU ASN VAL PHE ILE VAL SER PRO TYR ASN SEQRES 6 A 106 HIS THR ASN LEU PRO THR VAL THR PRO THR TYR ILE LYS SEQRES 7 A 106 ALA CYS CYS GLN SER ASN SER LEU LEU ASN MET GLU ASN SEQRES 8 A 106 TYR LEU VAL PRO TYR ASP ASN LEU GLU HIS HIS HIS HIS SEQRES 9 A 106 HIS HIS HELIX 1 1 ASP A 30 ALA A 40 1 11 HELIX 2 2 THR A 74 SER A 82 1 9 HELIX 3 3 LEU A 86 TYR A 91 5 6 SHEET 1 A 2 TYR A 17 LEU A 18 0 SHEET 2 A 2 ASP A 47 SER A 48 1 O SER A 48 N TYR A 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1