HEADER CELL ADHESION 11-OCT-10 2L4O TITLE SOLUTION STRUCTURE OF THE STREPTOCOCCUS PNEUMONIAE RRGB PILUS BACKBONE TITLE 2 D1 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL WALL SURFACE ANCHOR FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (UNP RESIDUES 23-191); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 GENE: RRGB, SP_0463; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET 21B+ KEYWDS RRGB, STREPTOCOCCUS PNEUMONIAE, PILUS, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.A.GENTILE,S.MELCHIORRE,C.EMOLO,M.MOSCHIONI,C.GIANFALDONI, AUTHOR 2 L.PANCOTTO,I.FERLENGHI,M.SCARSELLI,W.PANSEGRAU,D.VEGGI,M.MEROLA, AUTHOR 3 F.CANTINI,P.RUGGIERO,L.BANCI,V.MASIGNANI REVDAT 2 01-MAY-24 2L4O 1 REMARK SEQADV REVDAT 1 02-MAR-11 2L4O 0 JRNL AUTH M.A.GENTILE,S.MELCHIORRE,C.EMOLO,M.MOSCHIONI,C.GIANFALDONI, JRNL AUTH 2 L.PANCOTTO,I.FERLENGHI,M.SCARSELLI,W.PANSEGRAU,D.VEGGI, JRNL AUTH 3 M.MEROLA,F.CANTINI,P.RUGGIERO,L.BANCI,V.MASIGNANI JRNL TITL SOLUTION STRUCTURE OF THE STREPTOCOCCUS PNEUMONIAE RRGB JRNL TITL 2 PILUS BACKBONE D1 DOMAIN: IN VIVO PROTECTION AND JRNL TITL 3 IMPLICATIONS FOR THE MOLECULAR MECHANISMS OF PILUS JRNL TITL 4 POLYMERIZATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, AMBER 10 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), CASE, REMARK 3 DARDEN, CHEATHAM, III, SIMMERLING, WANG, DUKE, LUO REMARK 3 AND KOLLM (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES WERE BASED ON A TOTAL OF REMARK 3 3131 DISTANCE CONSTRAINTS AND 234 DIHEDRAL ANGLE RESTRAINTS, 400 REMARK 3 RANDOM CONFORMERS WERE ANNEALED IN 8000 STEPS REMARK 4 REMARK 4 2L4O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000101952. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-95% 15N] PROTEIN-1, REMARK 210 90% H2O/10% D2O; 0.9 MM PROTEIN- REMARK 210 2, 90% H2O/10% D2O; 0.4 MM [U-95% REMARK 210 13C; U-95% 15N] PROTEIN-3, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HN(COCA)CB; 3D HNCACB; 3D REMARK 210 HNCO; 3D HN(CO)CA; 3D HBHA(CO)NH; REMARK 210 3D HNCACO; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 700 MHZ; 800 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.0, CARA 2.0, XEASY, REMARK 210 CING, MOLMOL, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 8 PHE A 107 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 8 PHE A 107 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 10 PHE A 107 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 23 146.84 65.20 REMARK 500 1 PHE A 28 -142.41 38.20 REMARK 500 1 ALA A 29 -158.28 56.10 REMARK 500 1 ASN A 60 30.58 -83.23 REMARK 500 1 GLU A 93 2.86 -64.95 REMARK 500 1 PHE A 107 19.46 53.39 REMARK 500 1 ALA A 115 -81.24 -77.41 REMARK 500 1 ALA A 124 -37.70 -155.73 REMARK 500 1 ASP A 174 23.41 -72.48 REMARK 500 1 THR A 185 -20.10 -141.34 REMARK 500 2 GLU A 20 150.55 65.26 REMARK 500 2 THR A 21 -27.60 62.45 REMARK 500 2 ASP A 46 38.04 -149.64 REMARK 500 2 ASP A 48 14.62 -61.13 REMARK 500 2 ASN A 60 43.28 -77.37 REMARK 500 2 ASN A 87 10.37 -69.42 REMARK 500 2 ALA A 124 -43.69 -149.35 REMARK 500 2 ASP A 154 4.81 -67.13 REMARK 500 2 THR A 157 41.36 -69.50 REMARK 500 2 LEU A 158 5.46 -150.94 REMARK 500 2 ASP A 174 42.70 -73.14 REMARK 500 3 ALA A 29 -173.73 58.73 REMARK 500 3 ASP A 48 26.27 -65.28 REMARK 500 3 ASN A 60 34.46 -93.39 REMARK 500 3 ALA A 115 -87.80 -73.62 REMARK 500 3 ALA A 124 -35.23 -153.61 REMARK 500 3 THR A 157 40.52 -78.38 REMARK 500 4 ALA A 25 -29.61 -159.69 REMARK 500 4 ALA A 29 160.07 61.81 REMARK 500 4 ASP A 46 55.83 -146.87 REMARK 500 4 ASP A 48 18.09 -69.94 REMARK 500 4 ASN A 60 43.04 -83.89 REMARK 500 4 ALA A 115 -97.59 -74.69 REMARK 500 4 ALA A 124 -39.95 -167.84 REMARK 500 4 LEU A 147 47.50 -76.77 REMARK 500 4 THR A 149 -52.29 -132.89 REMARK 500 4 ASP A 154 39.98 -83.22 REMARK 500 4 THR A 185 -23.96 -150.46 REMARK 500 5 SER A 23 0.04 -158.44 REMARK 500 5 ALA A 25 -52.90 59.80 REMARK 500 5 ALA A 30 14.50 -152.75 REMARK 500 5 ASP A 46 51.99 -151.50 REMARK 500 5 ASN A 60 33.47 -84.27 REMARK 500 5 PHE A 107 16.34 57.74 REMARK 500 5 ALA A 124 -46.07 -152.78 REMARK 500 5 THR A 149 158.10 58.19 REMARK 500 5 ASP A 174 33.47 -80.54 REMARK 500 5 GLU A 186 -90.06 -88.84 REMARK 500 5 ALA A 187 -79.29 53.40 REMARK 500 5 LYS A 188 148.10 49.48 REMARK 500 REMARK 500 THIS ENTRY HAS 211 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 181 0.07 SIDE CHAIN REMARK 500 3 PHE A 81 0.08 SIDE CHAIN REMARK 500 8 TYR A 61 0.07 SIDE CHAIN REMARK 500 11 PHE A 81 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2L4O A 23 191 UNP Q97SC2 Q97SC2_STRPN 23 191 SEQADV 2L4O MET A 19 UNP Q97SC2 EXPRESSION TAG SEQADV 2L4O GLU A 20 UNP Q97SC2 EXPRESSION TAG SEQADV 2L4O THR A 21 UNP Q97SC2 EXPRESSION TAG SEQADV 2L4O ALA A 22 UNP Q97SC2 EXPRESSION TAG SEQADV 2L4O LEU A 192 UNP Q97SC2 EXPRESSION TAG SEQADV 2L4O GLU A 193 UNP Q97SC2 EXPRESSION TAG SEQADV 2L4O HIS A 194 UNP Q97SC2 EXPRESSION TAG SEQADV 2L4O HIS A 195 UNP Q97SC2 EXPRESSION TAG SEQADV 2L4O HIS A 196 UNP Q97SC2 EXPRESSION TAG SEQADV 2L4O HIS A 197 UNP Q97SC2 EXPRESSION TAG SEQADV 2L4O HIS A 198 UNP Q97SC2 EXPRESSION TAG SEQADV 2L4O HIS A 199 UNP Q97SC2 EXPRESSION TAG SEQRES 1 A 181 MET GLU THR ALA SER ALA ALA THR VAL PHE ALA ALA GLY SEQRES 2 A 181 THR THR THR THR SER VAL THR VAL HIS LYS LEU LEU ALA SEQRES 3 A 181 THR ASP GLY ASP MET ASP LYS ILE ALA ASN GLU LEU GLU SEQRES 4 A 181 THR GLY ASN TYR ALA GLY ASN LYS VAL GLY VAL LEU PRO SEQRES 5 A 181 ALA ASN ALA LYS GLU ILE ALA GLY VAL MET PHE VAL TRP SEQRES 6 A 181 THR ASN THR ASN ASN GLU ILE ILE ASP GLU ASN GLY GLN SEQRES 7 A 181 THR LEU GLY VAL ASN ILE ASP PRO GLN THR PHE LYS LEU SEQRES 8 A 181 SER GLY ALA MET PRO ALA THR ALA MET LYS LYS LEU THR SEQRES 9 A 181 GLU ALA GLU GLY ALA LYS PHE ASN THR ALA ASN LEU PRO SEQRES 10 A 181 ALA ALA LYS TYR LYS ILE TYR GLU ILE HIS SER LEU SER SEQRES 11 A 181 THR TYR VAL GLY GLU ASP GLY ALA THR LEU THR GLY SER SEQRES 12 A 181 LYS ALA VAL PRO ILE GLU ILE GLU LEU PRO LEU ASN ASP SEQRES 13 A 181 VAL VAL ASP ALA HIS VAL TYR PRO LYS ASN THR GLU ALA SEQRES 14 A 181 LYS PRO LYS ILE LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ASP A 48 THR A 58 1 11 SHEET 1 A 3 ALA A 127 ASN A 130 0 SHEET 2 A 3 SER A 36 VAL A 39 -1 N VAL A 37 O PHE A 129 SHEET 3 A 3 ALA A 178 VAL A 180 1 O ALA A 178 N THR A 38 SHEET 1 B 2 LEU A 42 ALA A 44 0 SHEET 2 B 2 ALA A 73 GLU A 75 -1 O LYS A 74 N LEU A 43 SHEET 1 C 4 LYS A 119 LEU A 121 0 SHEET 2 C 4 MET A 80 ASN A 85 -1 N PHE A 81 O LYS A 120 SHEET 3 C 4 LYS A 138 GLU A 143 -1 O LYS A 140 N THR A 84 SHEET 4 C 4 ILE A 166 GLU A 169 -1 O ILE A 168 N TYR A 139 SHEET 1 D 2 GLU A 89 ILE A 91 0 SHEET 2 D 2 THR A 97 ASN A 101 -1 O LEU A 98 N ILE A 90 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1