HEADER NUCLEAR PROTEIN 28-OCT-10 2L5A TITLE STRUCTURAL BASIS FOR RECOGNITION OF CENTROMERE SPECIFIC HISTONE H3 TITLE 2 VARIANT BY NONHISTONE SCM3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3-LIKE CENTROMERIC PROTEIN CSE4, PROTEIN SCM3, COMPND 3 HISTONE H4; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: CSE4(151-228), SCM3(93-172), H4(42-103); COMPND 6 SYNONYM: CENP-A HOMOLOG, CHROMOSOME SEGREGATION PROTEIN 4, SUPPRESSOR COMPND 7 OF CHROMOSOME MISSEGREGATION PROTEIN 3,; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: FUSION PROTEIN OF CSE4, SCM3 AND H4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: CSE4, CSL2, YKL049C, YKL262, SCM3, YDL139C, D2155, HHF1, SOURCE 6 YBR009C, YBR0122, HHF2, YNL030W, N2752; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CONDON PLUS RPL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET42B(+) KEYWDS A SINGLE CHAIN OF CSE4+SCM3+H4, FUSION PROTEIN, CHIMERA PROTEIN, KEYWDS 2 NUCLEAR PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Z.ZHOU,H.FENG,B.ZHOU,R.GHIRLANDO,K.HU,A.ZWOLAK,L.JENKINS,H.XIAO, AUTHOR 2 N.TJANDRA,C.WU,Y.BAI REVDAT 3 01-MAY-24 2L5A 1 REMARK SEQADV REVDAT 2 18-MAY-11 2L5A 1 JRNL REVDAT 1 16-MAR-11 2L5A 0 JRNL AUTH Z.ZHOU,H.FENG,B.R.ZHOU,R.GHIRLANDO,K.HU,A.ZWOLAK, JRNL AUTH 2 L.M.MILLER JENKINS,H.XIAO,N.TJANDRA,C.WU,Y.BAI JRNL TITL STRUCTURAL BASIS FOR RECOGNITION OF CENTROMERE HISTONE JRNL TITL 2 VARIANT CENH3 BY THE CHAPERONE SCM3. JRNL REF NATURE V. 472 234 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 21412236 JRNL DOI 10.1038/NATURE09854 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE UPDATED VERSION, X-PLOR NIH 2.25 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L5A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000101974. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 5.4 REMARK 210 IONIC STRENGTH : 0.00 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.8-1.0 MM [U-100% 15N] SCCSH-1, REMARK 210 90% H2O/10% D2O; 0.8-0.85 MM [U- REMARK 210 100% 15N] SCCSH-2, 90% H2O/10% REMARK 210 D2O; 0.8-0.85 MM [U-13C METHYL; REMARK 210 U-15N; U-2H] SCCSH-3, 90% H2O/10% REMARK 210 D2O; 0.8-0.85 MM [U-13C ; U-15N; REMARK 210 35%-2H] SCCSH-4, 90% H2O/10% REMARK 210 D2O; 0.8-0.85 MM [U-13C ; U-15N] REMARK 210 SCCSH-5, 100% D2O; 0.8-0.85 MM REMARK 210 SCCSH-6, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N TROSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-13C HMQC; 3D TRHNCACB; 3D REMARK 210 TRHNCOCACB; 3D TRHNCACO; 3D HCCH- REMARK 210 TOCSY; 3D CCCH-TOCSY; 3D HBHA(CO) REMARK 210 NH; 3D H(CCO)NH; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : DRX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 7.9.1, TALOS UPDATED REMARK 210 VERSION, X-PLOR NIH 2.25, REMARK 210 PROCHECKNMR, MOLMOL PYMOL, REMARK 210 MOLPROBITY 3.17 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 LYS A -2 REMARK 465 LYS A -1 REMARK 465 LEU A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 23 H ASP A 24 1.14 REMARK 500 HZ1 LYS A 118 H SER A 206 1.26 REMARK 500 HZ2 LYS A 214 HH21 ARG A 218 1.29 REMARK 500 O GLN A 36 H GLU A 40 1.56 REMARK 500 O LEU A 185 H ILE A 189 1.58 REMARK 500 NZ LYS A 118 H SER A 206 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 5 86.58 -169.25 REMARK 500 1 PHE A 18 -142.59 -79.12 REMARK 500 1 THR A 19 133.83 -39.93 REMARK 500 1 ASP A 22 30.49 -96.27 REMARK 500 1 ASP A 24 57.16 -149.52 REMARK 500 1 SER A 29 -2.58 -57.81 REMARK 500 1 ASN A 51 148.14 66.86 REMARK 500 1 THR A 61 -12.04 -48.64 REMARK 500 1 ILE A 62 2.68 -62.84 REMARK 500 1 MET A 63 -8.07 -49.61 REMARK 500 1 LYS A 65 -101.86 -168.66 REMARK 500 1 ARG A 74 7.88 52.05 REMARK 500 1 ARG A 81 18.81 -161.50 REMARK 500 1 MET A 84 85.40 -161.39 REMARK 500 1 LYS A 88 -16.64 -48.32 REMARK 500 1 GLU A 106 -2.04 -57.05 REMARK 500 1 GLU A 110 87.76 -29.13 REMARK 500 1 ASP A 113 165.39 -45.39 REMARK 500 1 ASP A 116 69.79 -67.08 REMARK 500 1 GLU A 124 69.05 -112.94 REMARK 500 1 HIS A 128 -132.44 -167.59 REMARK 500 1 ASN A 135 8.60 -61.66 REMARK 500 1 ASN A 136 114.85 59.33 REMARK 500 1 GLU A 159 -140.66 74.44 REMARK 500 1 ASP A 162 74.63 -67.19 REMARK 500 1 LYS A 167 -47.67 71.21 REMARK 500 1 ARG A 168 12.12 -66.93 REMARK 500 1 LYS A 202 59.53 -119.06 REMARK 500 1 THR A 203 -136.87 -143.88 REMARK 500 2 THR A 19 105.22 51.87 REMARK 500 2 THR A 50 65.55 28.62 REMARK 500 2 THR A 61 -9.96 -48.85 REMARK 500 2 ILE A 62 4.89 -69.04 REMARK 500 2 LYS A 65 -89.76 -162.68 REMARK 500 2 ARG A 72 -27.28 -39.10 REMARK 500 2 ILE A 73 -9.05 -55.61 REMARK 500 2 ARG A 74 16.50 54.63 REMARK 500 2 GLN A 76 79.78 -56.08 REMARK 500 2 ARG A 81 16.92 -161.85 REMARK 500 2 MET A 84 88.72 -161.39 REMARK 500 2 GLU A 106 -3.65 -55.74 REMARK 500 2 GLU A 110 59.91 16.09 REMARK 500 2 ASP A 113 -179.89 -50.83 REMARK 500 2 ASP A 116 71.05 -67.04 REMARK 500 2 ASN A 135 8.83 -60.06 REMARK 500 2 ASN A 136 117.16 59.49 REMARK 500 2 LYS A 139 31.60 -88.69 REMARK 500 2 ASP A 140 34.46 -70.20 REMARK 500 2 ILE A 153 -11.58 -46.45 REMARK 500 2 SER A 156 -117.57 168.80 REMARK 500 REMARK 500 THIS ENTRY HAS 629 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 AUTHOR STATES THE PROTEIN IS ONE CHIMERA PROTEIN COMPOSED OF REMARK 999 FOLDED CORES OF CSE4(PDB RESIDUES 0-87 CORESPONDS TO UNP REMARK 999 RESIDUES 151-228), SCM3(PDB RESIDUES 88-173 CORRESPONDS TO UNP REMARK 999 RESIDUES 93-172) AND H4(PDB RESIDUES 174-235 CORRESPONDS TO UNP REMARK 999 RESIDUES 42-103). DBREF 2L5A A 0 77 UNP P36012 CENPA_YEAST 151 228 DBREF 2L5A A 84 163 UNP Q12334 SCM3_YEAST 93 172 DBREF 2L5A A 164 225 UNP P02309 H4_YEAST 42 103 SEQADV 2L5A MET A -9 UNP P36012 EXPRESSION TAG SEQADV 2L5A HIS A -8 UNP P36012 EXPRESSION TAG SEQADV 2L5A HIS A -7 UNP P36012 EXPRESSION TAG SEQADV 2L5A HIS A -6 UNP P36012 EXPRESSION TAG SEQADV 2L5A HIS A -5 UNP P36012 EXPRESSION TAG SEQADV 2L5A HIS A -4 UNP P36012 EXPRESSION TAG SEQADV 2L5A HIS A -3 UNP P36012 EXPRESSION TAG SEQADV 2L5A LYS A -2 UNP P36012 EXPRESSION TAG SEQADV 2L5A LYS A -1 UNP P36012 EXPRESSION TAG SEQADV 2L5A LEU A 78 UNP P36012 LINKER SEQADV 2L5A VAL A 79 UNP P36012 LINKER SEQADV 2L5A PRO A 80 UNP P36012 LINKER SEQADV 2L5A ARG A 81 UNP P36012 LINKER SEQADV 2L5A GLY A 82 UNP P36012 LINKER SEQADV 2L5A SER A 83 UNP P36012 LINKER SEQRES 1 A 235 MET HIS HIS HIS HIS HIS HIS LYS LYS LEU LEU ILE SER SEQRES 2 A 235 LYS ILE PRO PHE ALA ARG LEU VAL LYS GLU VAL THR ASP SEQRES 3 A 235 GLU PHE THR THR LYS ASP GLN ASP LEU ARG TRP GLN SER SEQRES 4 A 235 MET ALA ILE MET ALA LEU GLN GLU ALA SER GLU ALA TYR SEQRES 5 A 235 LEU VAL GLY LEU LEU GLU HIS THR ASN LEU LEU ALA LEU SEQRES 6 A 235 HIS ALA LYS ARG ILE THR ILE MET LYS LYS ASP MET GLN SEQRES 7 A 235 LEU ALA ARG ARG ILE ARG GLY GLN PHE LEU VAL PRO ARG SEQRES 8 A 235 GLY SER MET GLU ARG HIS LYS LEU ALA ASP GLU ASN MET SEQRES 9 A 235 ARG LYS VAL TRP SER ASN ILE ILE SER LYS TYR GLU SER SEQRES 10 A 235 ILE GLU GLU GLN GLY ASP LEU VAL ASP LEU LYS THR GLY SEQRES 11 A 235 GLU ILE VAL GLU ASP ASN GLY HIS ILE LYS THR LEU THR SEQRES 12 A 235 ALA ASN ASN SER THR LYS ASP LYS ARG THR LYS TYR THR SEQRES 13 A 235 SER VAL LEU ARG ASP ILE ILE ASP ILE SER ASP GLU GLU SEQRES 14 A 235 ASP GLY ASP LYS GLY GLY VAL LYS ARG ILE SER GLY LEU SEQRES 15 A 235 ILE TYR GLU GLU VAL ARG ALA VAL LEU LYS SER PHE LEU SEQRES 16 A 235 GLU SER VAL ILE ARG ASP SER VAL THR TYR THR GLU HIS SEQRES 17 A 235 ALA LYS ARG LYS THR VAL THR SER LEU ASP VAL VAL TYR SEQRES 18 A 235 ALA LEU LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY SEQRES 19 A 235 GLY HELIX 1 1 ILE A 5 GLU A 17 1 13 HELIX 2 2 THR A 19 GLN A 23 5 5 HELIX 3 3 GLN A 28 HIS A 56 1 29 HELIX 4 4 ILE A 60 LYS A 64 5 5 HELIX 5 5 LYS A 65 ARG A 72 1 8 HELIX 6 6 MET A 84 GLU A 106 1 23 HELIX 7 7 ASN A 136 ASP A 140 5 5 HELIX 8 8 LYS A 144 SER A 156 1 13 HELIX 9 9 GLY A 171 ALA A 199 1 29 HELIX 10 10 THR A 205 TYR A 221 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1