HEADER SPLICING 02-NOV-10 2L5J TITLE STRUCTURE OF THE SPLICEOSOMAL PHOSPHOPEPTIDE P140 (PHOSPHORYLATED TITLE 2 FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 131-151; COMPND 5 SYNONYM: U1 SNRNP 70 KDA, U1-70K, SNRNP70; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS PHOSPHORYLATION, HSC70, LUPUS, SPLICING EXPDTA SOLUTION NMR NUMMDL 8 AUTHOR M.QUINTERNET,N.PAGE,N.SCHALL,J.STRUB,O.CHALOIN,M.DECOSSAS,M.CUNG, AUTHOR 2 A.VAN DORSSELAER,J.BRIAND,S.MULLER REVDAT 2 15-DEC-10 2L5J 1 JRNL REVDAT 1 01-DEC-10 2L5J 0 JRNL AUTH N.PAGE,N.SCHALL,J.M.STRUB,M.QUINTERNET,O.CHALOIN,M.DECOSSAS, JRNL AUTH 2 M.T.CUNG,A.VAN DORSSELAER,J.P.BRIAND,S.MULLER JRNL TITL THE SPLICEOSOMAL PHOSPHOPEPTIDE P140 CONTROLS THE LUPUS JRNL TITL 2 DISEASE BY INTERACTING WITH THE HSC70 PROTEIN AND VIA A JRNL TITL 3 MECHANISM MEDIATED BY GAMMADELTA T CELLS. JRNL REF PLOS ONE V. 4 E5273 2009 JRNL REFN ESSN 1932-6203 JRNL PMID 19390596 JRNL DOI 10.1371/JOURNAL.PONE.0005273 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : INSIGHTII REMARK 3 AUTHORS : ACCELRYS SOFTWARE INC. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L5J COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-10. REMARK 100 THE RCSB ID CODE IS RCSB101983. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 4 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM ENTITY-1, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA, INSIGHTII REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 8 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C TYR A 16 H ALA A 17 1.57 REMARK 500 C ARG A 9 H SEP A 10 1.57 REMARK 500 C ILE A 19 H GLU A 20 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLU A 20 CD GLU A 20 OE2 0.118 REMARK 500 1 TYR A 21 C TYR A 21 OXT 0.141 REMARK 500 2 GLU A 20 CD GLU A 20 OE2 0.119 REMARK 500 2 TYR A 21 C TYR A 21 OXT 0.142 REMARK 500 3 GLU A 20 CD GLU A 20 OE2 0.118 REMARK 500 3 TYR A 21 C TYR A 21 OXT 0.141 REMARK 500 4 GLU A 20 CD GLU A 20 OE2 0.119 REMARK 500 4 TYR A 21 C TYR A 21 OXT 0.144 REMARK 500 5 GLU A 20 CD GLU A 20 OE2 0.118 REMARK 500 5 TYR A 21 C TYR A 21 OXT 0.144 REMARK 500 6 GLU A 20 CD GLU A 20 OE2 0.118 REMARK 500 6 TYR A 21 C TYR A 21 OXT 0.141 REMARK 500 7 GLU A 20 CD GLU A 20 OE2 0.117 REMARK 500 7 TYR A 21 C TYR A 21 OXT 0.143 REMARK 500 8 GLU A 20 CD GLU A 20 OE2 0.117 REMARK 500 8 TYR A 21 C TYR A 21 OXT 0.142 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 1 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 HIS A 3 ND1 - CE1 - NE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 1 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 2 ARG A 1 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 HIS A 3 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 2 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 ARG A 1 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 HIS A 3 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 3 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 3 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 ARG A 1 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 HIS A 3 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 4 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 5 ARG A 1 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 5 HIS A 3 ND1 - CE1 - NE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 5 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 5 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 6 ARG A 1 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 6 HIS A 3 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 6 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 6 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 7 ARG A 1 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 7 HIS A 3 ND1 - CE1 - NE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 7 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 7 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 8 ARG A 1 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 8 HIS A 3 ND1 - CE1 - NE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 8 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 8 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 3 -68.21 -98.30 REMARK 500 1 TYR A 6 -108.39 -56.36 REMARK 500 1 SER A 7 -121.81 -128.88 REMARK 500 1 PRO A 13 -119.27 -68.18 REMARK 500 2 HIS A 3 -72.67 -102.54 REMARK 500 2 TYR A 6 -106.71 -55.64 REMARK 500 2 SER A 7 -118.60 -140.12 REMARK 500 2 ARG A 9 -63.14 -90.49 REMARK 500 2 PRO A 13 -122.92 -68.58 REMARK 500 3 HIS A 3 -71.33 -98.53 REMARK 500 3 TYR A 6 -100.24 -59.69 REMARK 500 3 ARG A 9 -62.19 -90.75 REMARK 500 3 PRO A 13 -119.68 -68.61 REMARK 500 3 ARG A 14 -33.83 -38.36 REMARK 500 4 HIS A 3 -69.54 -96.95 REMARK 500 4 TYR A 6 -106.51 -57.53 REMARK 500 4 SER A 7 -125.75 -128.01 REMARK 500 4 PRO A 13 -119.27 -68.97 REMARK 500 5 HIS A 3 -72.17 -104.94 REMARK 500 5 TYR A 6 -78.09 -81.18 REMARK 500 5 SER A 7 -144.29 -126.07 REMARK 500 5 PRO A 13 -122.70 -69.92 REMARK 500 5 ARG A 14 -29.00 -39.39 REMARK 500 6 HIS A 3 -71.72 -84.78 REMARK 500 6 TYR A 6 -79.63 -76.86 REMARK 500 6 SER A 7 -109.25 -146.30 REMARK 500 6 LYS A 8 -60.28 -91.56 REMARK 500 6 PRO A 13 -122.87 -68.89 REMARK 500 7 HIS A 3 -72.00 -87.75 REMARK 500 7 TYR A 6 -105.91 -58.47 REMARK 500 7 LYS A 12 76.65 -118.89 REMARK 500 7 PRO A 13 -119.69 -67.29 REMARK 500 8 HIS A 3 -73.72 -94.89 REMARK 500 8 TYR A 6 -111.57 -53.96 REMARK 500 8 SER A 7 -140.06 -118.60 REMARK 500 8 LYS A 12 72.28 -119.99 REMARK 500 8 PRO A 13 -119.70 -69.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 5 TYR A 6 1 134.35 REMARK 500 PRO A 13 ARG A 14 1 147.25 REMARK 500 TYR A 16 ALA A 17 1 147.90 REMARK 500 VAL A 5 TYR A 6 2 140.22 REMARK 500 LYS A 12 PRO A 13 2 144.43 REMARK 500 PRO A 13 ARG A 14 2 148.40 REMARK 500 TYR A 16 ALA A 17 2 148.90 REMARK 500 VAL A 5 TYR A 6 3 147.46 REMARK 500 LYS A 12 PRO A 13 3 148.49 REMARK 500 PRO A 13 ARG A 14 3 149.52 REMARK 500 TYR A 16 ALA A 17 3 149.79 REMARK 500 VAL A 5 TYR A 6 4 137.29 REMARK 500 PRO A 13 ARG A 14 4 145.22 REMARK 500 TYR A 16 ALA A 17 4 148.67 REMARK 500 LYS A 12 PRO A 13 5 146.12 REMARK 500 PRO A 13 ARG A 14 5 147.25 REMARK 500 TYR A 16 ALA A 17 5 149.65 REMARK 500 LYS A 12 PRO A 13 6 145.46 REMARK 500 PRO A 13 ARG A 14 6 148.62 REMARK 500 VAL A 5 TYR A 6 7 139.74 REMARK 500 LYS A 12 PRO A 13 7 147.78 REMARK 500 PRO A 13 ARG A 14 7 149.31 REMARK 500 TYR A 16 ALA A 17 7 147.14 REMARK 500 VAL A 5 TYR A 6 8 139.49 REMARK 500 LYS A 12 PRO A 13 8 148.31 REMARK 500 PRO A 13 ARG A 14 8 147.38 REMARK 500 TYR A 16 ALA A 17 8 146.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 1 ILE A 19 23.2 L L OUTSIDE RANGE REMARK 500 2 ILE A 19 23.5 L L OUTSIDE RANGE REMARK 500 3 ARG A 14 23.8 L L OUTSIDE RANGE REMARK 500 3 ILE A 19 23.8 L L OUTSIDE RANGE REMARK 500 4 ARG A 14 24.3 L L OUTSIDE RANGE REMARK 500 4 ILE A 19 22.5 L L OUTSIDE RANGE REMARK 500 5 ARG A 14 24.5 L L OUTSIDE RANGE REMARK 500 5 ILE A 19 23.0 L L OUTSIDE RANGE REMARK 500 6 ARG A 14 24.6 L L OUTSIDE RANGE REMARK 500 6 ILE A 19 23.2 L L OUTSIDE RANGE REMARK 500 7 ARG A 14 24.7 L L OUTSIDE RANGE REMARK 500 7 ILE A 19 23.7 L L OUTSIDE RANGE REMARK 500 8 ARG A 14 24.7 L L OUTSIDE RANGE REMARK 500 8 ILE A 19 22.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2L5I RELATED DB: PDB DBREF 2L5J A 1 21 UNP P08621 RU17_HUMAN 131 151 SEQRES 1 A 21 ARG ILE HIS MET VAL TYR SER LYS ARG SEP GLY LYS PRO SEQRES 2 A 21 ARG GLY TYR ALA PHE ILE GLU TYR MODRES 2L5J SEP A 10 SER PHOSPHOSERINE HET SEP A 10 15 HETNAM SEP PHOSPHOSERINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP C3 H8 N O6 P HELIX 1 1 PRO A 13 PHE A 18 5 6 LINK C ARG A 9 N SEP A 10 1555 1555 1.28 LINK C SEP A 10 N GLY A 11 1555 1555 1.35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1