HEADER TRANSPORT PROTEIN 02-NOV-10 2L5L TITLE SOLUTION STRUCTURE OF THIOREDOXIN FROM BACTEROIDES VULGATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 STRAIN: ATCC 8482 / DSM 1447 / NCTC 11154; SOURCE 5 GENE: BVU_1309; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, ELECTRON TRANSPORT, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, NYSGRC, KEYWDS 4 PSI-BIOLOGY, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.HARRIS,R.FOTI,R.D.SEIDEL,J.B.BONANNO,J.FREEMAN,K.T.BAIN,J.M.SAUDER, AUTHOR 2 S.K.BURLEY,M.E.GIRVIN,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC),NEW YORK STRUCTURAL GENOMICS RESEARCH AUTHOR 4 CONSORTIUM (NYSGRC) REVDAT 5 01-MAY-24 2L5L 1 REMARK REVDAT 4 10-FEB-21 2L5L 1 AUTHOR JRNL SEQADV REVDAT 3 14-NOV-18 2L5L 1 AUTHOR REVDAT 2 08-MAY-13 2L5L 1 AUTHOR REMARK KEYWDS VERSN REVDAT 1 24-NOV-10 2L5L 0 JRNL AUTH R.HARRIS,R.FOTI,R.D.SEIDEL,J.B.BONANNO,J.FREEMAN,K.T.BAIN, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,M.E.GIRVIN,S.C.ALMO JRNL TITL SOLUTION STRUCTURE OF THIOREDOXIN FROM BACTEROIDES VULGATUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT IN A BOX OF WATER REMARK 4 REMARK 4 2L5L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000101985. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 THIOREDOXIN, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 1 MM DTT, 90% H2O, 10% D2O; 1 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 THIOREDOXIN, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 1 MM DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N HSQC; 15N NOESY-HSQC; 13C REMARK 210 HSQC; AROMATIC 13C HSQC; 13C REMARK 210 NOESY-HSQC; 13C AROMATIC NOESY- REMARK 210 HSQC; HNCO; HNCACO; HNCOCA; REMARK 210 HNCACB; CBCACONH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPN_ANALYSIS REMARK 210 METHOD USED : SIMULATING ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 STRUCTURES FOR LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 44 HZ2 LYS A 75 1.51 REMARK 500 OE1 GLU A 62 HZ1 LYS A 65 1.52 REMARK 500 OE1 GLU A 102 HZ1 LYS A 128 1.57 REMARK 500 HZ3 LYS A 80 OE1 GLU A 81 1.57 REMARK 500 OE2 GLU A 102 HD1 HIS A 132 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 4 87.44 -152.14 REMARK 500 1 GLU A 6 -132.85 56.59 REMARK 500 1 VAL A 23 -52.90 -129.06 REMARK 500 1 GLU A 81 44.23 -90.83 REMARK 500 1 ARG A 91 -67.77 72.03 REMARK 500 1 SER A 92 -89.31 -151.77 REMARK 500 1 PHE A 124 -50.35 -138.46 REMARK 500 1 HIS A 135 -46.80 167.59 REMARK 500 2 LEU A 3 -72.08 -101.33 REMARK 500 2 VAL A 23 -56.34 -141.02 REMARK 500 2 GLU A 81 42.87 -97.85 REMARK 500 2 SER A 92 -85.29 -177.65 REMARK 500 2 PHE A 124 -53.40 -143.51 REMARK 500 3 LEU A 3 -70.53 -100.67 REMARK 500 3 ALA A 4 -62.16 -171.81 REMARK 500 3 TYR A 24 117.88 -164.95 REMARK 500 3 ASN A 29 61.54 -118.69 REMARK 500 3 GLU A 36 40.81 -84.53 REMARK 500 3 GLU A 81 30.75 -82.26 REMARK 500 3 SER A 92 -94.83 178.14 REMARK 500 3 PHE A 124 -48.41 -151.63 REMARK 500 3 HIS A 131 -86.95 49.77 REMARK 500 3 HIS A 133 -84.77 -125.20 REMARK 500 4 ALA A 4 -80.29 -168.65 REMARK 500 4 THR A 5 88.95 63.33 REMARK 500 4 VAL A 23 -50.69 -140.34 REMARK 500 4 TYR A 24 116.02 -175.14 REMARK 500 4 ASP A 38 -55.34 -141.54 REMARK 500 4 GLU A 81 43.24 -100.11 REMARK 500 4 SER A 92 -79.71 -160.82 REMARK 500 4 LYS A 128 96.90 -51.69 REMARK 500 4 HIS A 135 43.92 -76.99 REMARK 500 5 SER A 2 -31.20 75.82 REMARK 500 5 TRP A 33 93.20 -69.46 REMARK 500 5 ASP A 38 -60.67 -163.74 REMARK 500 5 GLU A 81 45.25 -97.86 REMARK 500 5 SER A 92 -91.03 175.65 REMARK 500 5 LYS A 128 99.62 -48.42 REMARK 500 5 HIS A 134 62.83 -171.66 REMARK 500 6 THR A 5 87.65 67.14 REMARK 500 6 VAL A 23 -45.41 -132.45 REMARK 500 6 TYR A 24 116.74 -164.42 REMARK 500 6 GLU A 81 39.63 -85.93 REMARK 500 6 SER A 92 -93.59 177.17 REMARK 500 6 PHE A 124 -52.49 -120.81 REMARK 500 6 LYS A 128 82.66 30.77 REMARK 500 6 HIS A 135 18.23 -143.26 REMARK 500 7 THR A 5 -147.21 56.79 REMARK 500 7 GLU A 6 -52.09 -131.75 REMARK 500 7 GLU A 81 33.60 -84.85 REMARK 500 REMARK 500 THIS ENTRY HAS 177 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11218B RELATED DB: TARGETDB REMARK 900 RELATED ID: 17275 RELATED DB: BMRB REMARK 900 RELATED ID: NYSGRC-011324 RELATED DB: TARGETTRACK DBREF 2L5L A 4 128 UNP A6KZY4 A6KZY4_BACV8 35 159 SEQADV 2L5L MET A 1 UNP A6KZY4 EXPRESSION TAG SEQADV 2L5L SER A 2 UNP A6KZY4 EXPRESSION TAG SEQADV 2L5L LEU A 3 UNP A6KZY4 EXPRESSION TAG SEQADV 2L5L GLU A 129 UNP A6KZY4 EXPRESSION TAG SEQADV 2L5L GLY A 130 UNP A6KZY4 EXPRESSION TAG SEQADV 2L5L HIS A 131 UNP A6KZY4 EXPRESSION TAG SEQADV 2L5L HIS A 132 UNP A6KZY4 EXPRESSION TAG SEQADV 2L5L HIS A 133 UNP A6KZY4 EXPRESSION TAG SEQADV 2L5L HIS A 134 UNP A6KZY4 EXPRESSION TAG SEQADV 2L5L HIS A 135 UNP A6KZY4 EXPRESSION TAG SEQADV 2L5L HIS A 136 UNP A6KZY4 EXPRESSION TAG SEQRES 1 A 136 MET SER LEU ALA THR GLU GLY ASN GLY LYS VAL ILE HIS SEQRES 2 A 136 LEU THR LYS ALA GLU PHE LEU ALA LYS VAL TYR ASN PHE SEQRES 3 A 136 GLU LYS ASN PRO GLU GLU TRP LYS TYR GLU GLY ASP LYS SEQRES 4 A 136 PRO ALA ILE VAL ASP PHE TYR ALA ASP TRP CYS GLY PRO SEQRES 5 A 136 CYS LYS MET VAL ALA PRO ILE LEU ASP GLU LEU ALA LYS SEQRES 6 A 136 GLU TYR ASP GLY GLN ILE VAL ILE TYR LYS VAL ASP THR SEQRES 7 A 136 GLU LYS GLU GLN GLU LEU ALA GLY ALA PHE GLY ILE ARG SEQRES 8 A 136 SER ILE PRO SER ILE LEU PHE ILE PRO MET GLU GLY LYS SEQRES 9 A 136 PRO GLU MET ALA GLN GLY ALA MET PRO LYS ALA SER PHE SEQRES 10 A 136 LYS LYS ALA ILE ASP GLU PHE LEU LEU LYS LYS GLU GLY SEQRES 11 A 136 HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 15 VAL A 23 1 9 HELIX 2 2 CYS A 50 TYR A 67 1 18 HELIX 3 3 GLU A 81 PHE A 88 1 8 HELIX 4 4 PRO A 113 LEU A 126 1 14 SHEET 1 A 5 VAL A 11 LEU A 14 0 SHEET 2 A 5 VAL A 72 ASP A 77 1 O LYS A 75 N LEU A 14 SHEET 3 A 5 ALA A 41 TYR A 46 1 N ILE A 42 O TYR A 74 SHEET 4 A 5 SER A 95 ILE A 99 -1 O SER A 95 N PHE A 45 SHEET 5 A 5 GLU A 106 GLN A 109 -1 O GLU A 106 N PHE A 98 CISPEP 1 ILE A 93 PRO A 94 1 -5.00 CISPEP 2 ILE A 93 PRO A 94 2 -6.24 CISPEP 3 ILE A 93 PRO A 94 3 -3.61 CISPEP 4 ILE A 93 PRO A 94 4 -3.78 CISPEP 5 ILE A 93 PRO A 94 5 -3.53 CISPEP 6 ILE A 93 PRO A 94 6 -3.82 CISPEP 7 ILE A 93 PRO A 94 7 -4.25 CISPEP 8 ILE A 93 PRO A 94 8 -2.30 CISPEP 9 ILE A 93 PRO A 94 9 -3.66 CISPEP 10 ILE A 93 PRO A 94 10 -3.22 CISPEP 11 ILE A 93 PRO A 94 11 -2.82 CISPEP 12 ILE A 93 PRO A 94 12 -2.35 CISPEP 13 ILE A 93 PRO A 94 13 -3.74 CISPEP 14 ILE A 93 PRO A 94 14 -5.71 CISPEP 15 ILE A 93 PRO A 94 15 -3.85 CISPEP 16 ILE A 93 PRO A 94 16 -3.05 CISPEP 17 ILE A 93 PRO A 94 17 -3.61 CISPEP 18 ILE A 93 PRO A 94 18 -4.87 CISPEP 19 ILE A 93 PRO A 94 19 -2.59 CISPEP 20 ILE A 93 PRO A 94 20 -4.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1