HEADER SIGNALING PROTEIN 09-NOV-10 2L5Y TITLE NMR STRUCTURE OF CALCIUM-LOADED STIM2 EF-SAM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: STROMAL INTERACTION MOLECULE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 62-205; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA1482, STIM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS STROMAL INTERACTION MOLECULE, EF-HAND, SAM DOMAIN, STORE OPERATED KEYWDS 2 CALCIUM ENTRY, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.ZHENG,P.B.STATHOPULOS,M.IKURA REVDAT 4 01-MAY-24 2L5Y 1 REMARK LINK REVDAT 3 05-FEB-20 2L5Y 1 REMARK SEQADV REVDAT 2 09-FEB-11 2L5Y 1 JRNL REVDAT 1 19-JAN-11 2L5Y 0 JRNL AUTH L.ZHENG,P.B.STATHOPULOS,R.SCHINDL,G.Y.LI,C.ROMANIN,M.IKURA JRNL TITL AUTO-INHIBITORY ROLE OF THE EF-SAM DOMAIN OF STIM PROTEINS JRNL TITL 2 IN STORE-OPERATED CALCIUM ENTRY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 1337 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21217057 JRNL DOI 10.1073/PNAS.1015125108 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS V1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WATER REFINEMENT WAS PERFORMED USING REMARK 3 THE RECOORD SCRIPTS (NEDERVEEN ET AL., 2005) IN CNS (V1.1) REMARK 3 (BRUNGER ET AL., 1998)., WATER REFINEMENT WAS PERFORMED USING REMARK 3 THE RECOORD SCRIPTS (NEDERVEEN ET AL., 2005) IN CNS (V1.1) REMARK 3 (BRUNGER ET AL., 1998). REMARK 4 REMARK 4 2L5Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000101998. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288; 288 REMARK 210 PH : 7.5; NULL REMARK 210 IONIC STRENGTH : 105; 105 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-0.7 MM [U-99% 15N] PROTEIN REMARK 210 (STROMAL INTERACTION MOLECULE 2)- REMARK 210 1, 20 MM TRIS-2, 100 MM SODIUM REMARK 210 CHLORIDE-3, 10 MM CALCIUM ION-4, REMARK 210 90% H2O/10% D2O; 0.5-0.7 MM [U- REMARK 210 99% 13C; U-99% 15N] PROTEIN REMARK 210 (STROMAL INTERACTION MOLECULE 2)- REMARK 210 5, 20 MM TRIS-6, 100 MM SODIUM REMARK 210 CHLORIDE-7, 10 MM CALCIUM ION-8, REMARK 210 90% H2O/10% D2O; 0.5-0.7 MM [U- REMARK 210 99% 13C; U-99% 15N] PROTEIN REMARK 210 (STROMAL INTERACTION MOLECULE 2)- REMARK 210 9, 20 MM TRIS-10, 100 MM SODIUM REMARK 210 CHLORIDE-11, 10 MM CALCIUM ION- REMARK 210 12, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 3D HN(CO)CA; 3D REMARK 210 HNCO; 3D HBHA(CO)NH; 2D 1H-13C REMARK 210 HSQC; 3D HCCH-TOCSY; 3D HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA V2.1, NMRPIPE, XEASY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, DGSA REMARK 210 -DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 103 OD1 ASP A 200 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 4 GLY A 86 N GLY A 86 CA -0.095 REMARK 500 6 GLY A 86 N GLY A 86 CA -0.092 REMARK 500 9 GLU A 91 CD GLU A 91 OE1 -0.079 REMARK 500 18 GLY A 86 N GLY A 86 CA -0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 9 GLU A 91 OE1 - CD - OE2 ANGL. DEV. = -8.5 DEGREES REMARK 500 16 GLU A 91 OE1 - CD - OE2 ANGL. DEV. = -7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 98 -64.75 -131.27 REMARK 500 1 LYS A 103 -56.14 -132.91 REMARK 500 1 ALA A 105 -66.18 -121.08 REMARK 500 1 GLU A 115 -46.44 -166.01 REMARK 500 1 ASN A 162 79.68 94.53 REMARK 500 1 THR A 166 -65.52 -99.32 REMARK 500 1 SER A 186 43.51 -81.26 REMARK 500 2 MET A -2 -55.31 -133.48 REMARK 500 2 ALA A -1 -157.05 59.65 REMARK 500 2 SER A 0 -66.05 -146.38 REMARK 500 2 GLU A 98 -60.74 -139.86 REMARK 500 2 TYR A 102 -34.45 -39.39 REMARK 500 2 ALA A 105 -63.32 -123.66 REMARK 500 2 LEU A 151 65.36 -117.71 REMARK 500 2 ASN A 162 70.08 99.56 REMARK 500 2 THR A 166 -67.89 -103.62 REMARK 500 2 GLU A 175 -68.66 -173.45 REMARK 500 2 PHE A 178 -74.12 -68.09 REMARK 500 2 SER A 186 33.29 -93.81 REMARK 500 2 PHE A 204 -61.17 -97.14 REMARK 500 3 SER A 0 -67.55 -96.61 REMARK 500 3 LYS A 83 75.02 49.12 REMARK 500 3 GLU A 98 -55.04 -139.04 REMARK 500 3 LYS A 103 -42.01 -131.46 REMARK 500 3 ALA A 105 -73.48 -155.63 REMARK 500 3 LYS A 117 -51.35 -126.27 REMARK 500 3 GLU A 150 33.71 74.84 REMARK 500 3 LEU A 151 70.72 -118.76 REMARK 500 3 ASN A 162 71.98 94.99 REMARK 500 3 PRO A 176 -76.82 -57.89 REMARK 500 3 SER A 186 43.10 -86.26 REMARK 500 4 SER A -4 98.49 66.51 REMARK 500 4 GLU A 98 -57.10 -139.24 REMARK 500 4 ALA A 105 -81.11 -147.25 REMARK 500 4 GLU A 115 -46.36 -148.48 REMARK 500 4 LYS A 117 -61.24 -97.18 REMARK 500 4 LEU A 151 65.68 -119.20 REMARK 500 4 ASN A 162 69.66 100.38 REMARK 500 4 THR A 166 -68.42 -93.30 REMARK 500 4 PRO A 176 -79.90 -62.09 REMARK 500 4 SER A 177 176.80 172.69 REMARK 500 4 SER A 186 150.46 68.90 REMARK 500 4 ASP A 187 -26.71 -148.42 REMARK 500 5 GLU A 98 -59.45 -130.26 REMARK 500 5 LYS A 103 -77.57 -137.27 REMARK 500 5 GLU A 115 -44.78 -168.16 REMARK 500 5 HIS A 118 98.00 -69.15 REMARK 500 5 ASN A 162 73.64 94.80 REMARK 500 5 PHE A 178 -70.96 -49.87 REMARK 500 5 LYS A 184 -106.43 58.94 REMARK 500 REMARK 500 THIS ENTRY HAS 223 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 ARG A 114 0.09 SIDE CHAIN REMARK 500 20 ARG A 188 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 300 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 84 OD2 REMARK 620 2 GLY A 86 O 71.0 REMARK 620 3 GLU A 88 OE2 86.9 92.5 REMARK 620 4 GLU A 91 OE1 153.6 84.3 85.0 REMARK 620 5 GLU A 91 OE2 159.0 129.4 96.0 47.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17289 RELATED DB: BMRB DBREF 2L5Y A 62 205 UNP Q9P246 STIM2_HUMAN 62 205 SEQADV 2L5Y GLY A -5 UNP Q9P246 EXPRESSION TAG SEQADV 2L5Y SER A -4 UNP Q9P246 EXPRESSION TAG SEQADV 2L5Y HIS A -3 UNP Q9P246 EXPRESSION TAG SEQADV 2L5Y MET A -2 UNP Q9P246 EXPRESSION TAG SEQADV 2L5Y ALA A -1 UNP Q9P246 EXPRESSION TAG SEQADV 2L5Y SER A 0 UNP Q9P246 EXPRESSION TAG SEQRES 1 A 150 GLY SER HIS MET ALA SER THR GLU GLU ASP ARG PHE SER SEQRES 2 A 150 LEU GLU ALA LEU GLN THR ILE HIS LYS GLN MET ASP ASP SEQRES 3 A 150 ASP LYS ASP GLY GLY ILE GLU VAL GLU GLU SER ASP GLU SEQRES 4 A 150 PHE ILE ARG GLU ASP MET LYS TYR LYS ASP ALA THR ASN SEQRES 5 A 150 LYS HIS SER HIS LEU HIS ARG GLU ASP LYS HIS ILE THR SEQRES 6 A 150 ILE GLU ASP LEU TRP LYS ARG TRP LYS THR SER GLU VAL SEQRES 7 A 150 HIS ASN TRP THR LEU GLU ASP THR LEU GLN TRP LEU ILE SEQRES 8 A 150 GLU PHE VAL GLU LEU PRO GLN TYR GLU LYS ASN PHE ARG SEQRES 9 A 150 ASP ASN ASN VAL LYS GLY THR THR LEU PRO ARG ILE ALA SEQRES 10 A 150 VAL HIS GLU PRO SER PHE MET ILE SER GLN LEU LYS ILE SEQRES 11 A 150 SER ASP ARG SER HIS ARG GLN LYS LEU GLN LEU LYS ALA SEQRES 12 A 150 LEU ASP VAL VAL LEU PHE GLY HET CA A 300 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ HELIX 1 1 THR A 62 ASP A 80 1 19 HELIX 2 2 GLU A 88 ARG A 97 1 10 HELIX 3 3 ALA A 105 HIS A 113 1 9 HELIX 4 4 THR A 120 THR A 130 1 11 HELIX 5 5 SER A 131 TRP A 136 1 6 HELIX 6 6 THR A 137 VAL A 149 1 13 HELIX 7 7 TYR A 154 VAL A 163 1 10 HELIX 8 8 ASP A 187 GLY A 205 1 19 LINK OD2 ASP A 84 CA CA A 300 1555 1555 1.92 LINK O GLY A 86 CA CA A 300 1555 1555 2.93 LINK OE2 GLU A 88 CA CA A 300 1555 1555 1.88 LINK OE1 GLU A 91 CA CA A 300 1555 1555 1.86 LINK OE2 GLU A 91 CA CA A 300 1555 1555 2.91 SITE 1 AC1 6 ASP A 80 ASP A 82 ASP A 84 GLY A 86 SITE 2 AC1 6 GLU A 88 GLU A 91 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1