HEADER RNA 10-NOV-10 2L5Z TITLE NMR STRUCTURE OF THE A730 LOOP OF THE NEUROSPORA VS RIBOZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (26-MER); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: A730 LOOP DOMAIN OF THE VS RIBOZYME; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: NEUROSPORA; SOURCE 4 ORGANISM_TAXID: 5140 KEYWDS RNA, INTERNAL LOOP, VS RIBOZYME EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR G.DESJARDINS,E.BONNEAU,N.GIRARD,J.BOISBOUVIER,P.LEGAULT REVDAT 5 15-MAY-24 2L5Z 1 REMARK REVDAT 4 14-JUN-23 2L5Z 1 REMARK REVDAT 3 05-FEB-20 2L5Z 1 REMARK REVDAT 2 15-JUN-11 2L5Z 1 JRNL REVDAT 1 16-FEB-11 2L5Z 0 JRNL AUTH G.DESJARDINS,E.BONNEAU,N.GIRARD,J.BOISBOUVIER,P.LEGAULT JRNL TITL NMR STRUCTURE OF THE A730 LOOP OF THE NEUROSPORA VS JRNL TITL 2 RIBOZYME: INSIGHTS INTO THE FORMATION OF THE ACTIVE SITE. JRNL REF NUCLEIC ACIDS RES. V. 39 4427 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 21266483 JRNL DOI 10.1093/NAR/GKQ1244 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.DESJARDINS,E.BONNEAU,N.GIRARD,J.BOISBOUVIER,P.LEGAULT REMARK 1 TITL NMR STRUCTURE OF THE A730 LOOP OF THE NEUROSPORA VS REMARK 1 TITL 2 RIBOZYME: INSIGHTS INTO THE FORMATION OF THE ACTIVE SITE REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODULE 1.0, X-PLOR NIH REMARK 3 AUTHORS : (MODULE) (MODULE), SCHWIETERS, KUSZEWSKI, TJANDRA REMARK 3 AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L5Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000101999. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288; 288 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 50 MM KCL AND 5 MM MGCL2; 50 MM REMARK 210 KCL AND 5 MM MGCL2 REMARK 210 PRESSURE : AMBIENT ATM; AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.4-1.8 MM VS RIBOZYME SVI RNA REMARK 210 (26-MER)-1, 90% H2O/10% D2O; 0.4- REMARK 210 1.8 MM VS RIBOZYME SVI RNA (26- REMARK 210 MER)-2, 100% D2O; 0.4-1.8 MM [U- REMARK 210 15N] VS RIBOZYME SVI RNA (26-MER) REMARK 210 -3, 90% H2O/10% D2O; 0.4-1.8 MM REMARK 210 [U-15N] VS RIBOZYME SVI RNA (26- REMARK 210 MER)-4, 100% D2O; 0.4-1.8 MM [U- REMARK 210 13C; U-15N] VS RIBOZYME SVI RNA REMARK 210 (26-MER)-5, 90% H2O/10% D2O; 0.4- REMARK 210 1.8 MM [U-13C; U-15N] VS REMARK 210 RIBOZYME SVI RNA (26-MER)-6, 100% REMARK 210 D2O; 0.4 MM [U-15N] VS RIBOZYME REMARK 210 SVI RNA (26-MER)-7, 90% H2O/10% REMARK 210 D2O; 0.4 MM [U-13C; U-15N] VS REMARK 210 RIBOZYME SVI RNA (26-MER)-8, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C CT-HSQC; 2D 1H-13C REMARK 210 HMQC; 2D 1H-15N MQ-(HC)N(C)H; 3D REMARK 210 CT-HCCH-COSY; 3D HCCH-TOCSY; 3D REMARK 210 13C-EDITED HMQC-NOESY; 1D FLIP- REMARK 210 BACK WATERGATE 1H; 2D FLIP-BACK REMARK 210 WATERGATE NOESY; 2D IMINO- AND REMARK 210 AMINO-OPTIMIZED 2D 1H-15N HSQC; REMARK 210 2D H(NCCC)H FOR URACIL AND REMARK 210 CYTOSINE RESIDUES; 2D H(NC)- REMARK 210 TOCSY-(C)H FOR GUANOSINE REMARK 210 RESIDUES; 2D (H)N(C)-TOCSY-(C)H REMARK 210 FOR ADENOSINE RESIDUES; 2D 1H- REMARK 210 15N CPMG-NOESY; 2D 1H 15N HMQC REMARK 210 OPTIMIZED FOR TRANSFERS VIA J= REMARK 210 7.0 HZ AND J=21 HZ; 2D HNN-COSY; REMARK 210 2D DQF-COSY; 3D HCCH-E.COSY; 2D REMARK 210 IMINO-OPTIMIZED 2D 1H-15N HSQC; REMARK 210 SPIN-STATE SELECTIVE EXPERIMENTS REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW, NMRVIEW, X-PLOR NIH, REMARK 210 CURVES+, PYMOL REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 1 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 A A 2 N7 - C8 - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 G A 3 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 G A 6 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 A A 8 N7 - C8 - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 G A 9 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 A A 11 N7 - C8 - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 G A 13 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 A A 14 N7 - C8 - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 A A 15 N7 - C8 - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 A A 16 N7 - C8 - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 G A 17 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 G A 19 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 A A 20 N7 - C8 - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 G A 22 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 G A 23 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 G A 1 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 A A 2 N7 - C8 - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 G A 3 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 G A 6 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 A A 8 N7 - C8 - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 G A 9 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 A A 11 N7 - C8 - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 G A 13 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 A A 14 N7 - C8 - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 A A 15 N7 - C8 - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 A A 16 N7 - C8 - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 G A 17 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 G A 19 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 A A 20 N7 - C8 - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 G A 22 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 G A 23 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 G A 1 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 A A 2 N7 - C8 - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 G A 3 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 G A 6 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 G A 9 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 3 A A 11 N7 - C8 - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 3 G A 13 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 3 A A 14 N7 - C8 - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 A A 15 N7 - C8 - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 A A 16 N7 - C8 - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 G A 17 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 3 G A 19 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 A A 20 N7 - C8 - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 3 G A 22 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 G A 23 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 G A 1 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 A A 2 N7 - C8 - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 G A 3 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 323 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17292 RELATED DB: BMRB DBREF 2L5Z A 1 26 PDB 2L5Z 2L5Z 1 26 SEQRES 1 A 26 G A G C U G C A G C A C G SEQRES 2 A 26 A A A G U G A C G G C U C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1