HEADER DE NOVO PROTEIN 17-NOV-10 2L69 TITLE SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED PROTEIN, P-LOOP NTPASE TITLE 2 FOLD, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR28 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROSSMANN 2X3 FOLD PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTIFICIAL GENE; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PET29B+ KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, UNKNOWN FUNCTION, DE NOVO KEYWDS 3 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,N.KOGA,R.KOGA,R.XIAO,A.MAO,B.MAO,D.PATEL,C.CICCOSANTI, AUTHOR 2 K.HAMILTON,T.B.ACTON,D.BAKER,G.T.MONTELIONE,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 5 15-MAY-24 2L69 1 REMARK REVDAT 4 14-JUN-23 2L69 1 REMARK REVDAT 3 05-FEB-20 2L69 1 REMARK REVDAT 2 22-FEB-12 2L69 1 VERSN KEYWDS REVDAT 1 12-JAN-11 2L69 0 JRNL AUTH G.LIU,N.KOGA,R.KOGA,R.XIAO,L.MAO,D.PATEL,C.CICCOSANTI, JRNL AUTH 2 A.HAMILTON,B.MAO,T.B.ACTON,D.BAKER,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED ROSSMANN 2X3 FOLD JRNL TITL 2 PROTEIN, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET JRNL TITL 3 OR28 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.0, AUTOSTRUCTURE 2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L69 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000102009. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.62 MM [U-100% 13C; U-100% 15N] REMARK 210 OR28, 95% H2O/5% D2O; 0.47 MM [U- REMARK 210 5% 13C; U-100% 15N] OR28, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D 1H-13C AROM NOESY; 3D REMARK 210 SIMUTANEOUS 13C-AROMATIC,13C- REMARK 210 ALIPHATIC,15N EDITED 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA 3.0, AUTOSTRUCTURE REMARK 210 2.1, AUTOASSIGN 2.1, NMRPIPE, REMARK 210 XEASY, TOPSPIN, VNMRJ, UBNMR 1.3, REMARK 210 TALOS+ REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS, REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 51 92.32 -61.40 REMARK 500 1 HIS A 130 -78.43 63.36 REMARK 500 1 HIS A 131 97.09 -62.66 REMARK 500 2 ASN A 2 129.74 -174.94 REMARK 500 2 ALA A 51 30.16 -98.59 REMARK 500 2 ASP A 59 -33.67 -148.63 REMARK 500 2 HIS A 129 106.46 -57.36 REMARK 500 3 SER A 9 109.75 176.42 REMARK 500 3 HIS A 129 73.63 -158.40 REMARK 500 4 THR A 10 -60.92 66.04 REMARK 500 4 LYS A 48 -78.72 -105.95 REMARK 500 4 HIS A 129 -62.41 -127.30 REMARK 500 4 HIS A 130 107.48 -169.98 REMARK 500 4 HIS A 131 -31.26 71.57 REMARK 500 5 SER A 9 113.26 -163.08 REMARK 500 5 ASP A 60 -158.57 -136.44 REMARK 500 5 GLU A 128 99.10 -59.73 REMARK 500 6 PHE A 8 43.90 -86.31 REMARK 500 6 GLU A 128 79.03 -113.20 REMARK 500 7 ASN A 50 -93.62 -87.53 REMARK 500 7 ALA A 51 19.69 51.24 REMARK 500 7 HIS A 129 4.20 58.67 REMARK 500 7 HIS A 132 73.85 68.05 REMARK 500 8 ASN A 2 74.14 -67.04 REMARK 500 8 PHE A 8 36.89 -86.71 REMARK 500 8 LYS A 47 -60.22 -108.96 REMARK 500 8 TYR A 49 -158.97 -134.57 REMARK 500 8 ASN A 50 -89.36 77.35 REMARK 500 8 HIS A 129 56.57 -163.18 REMARK 500 10 LYS A 47 -73.23 -72.76 REMARK 500 11 SER A 9 99.58 -68.48 REMARK 500 11 LEU A 127 -45.38 -148.02 REMARK 500 11 GLU A 128 44.86 -78.98 REMARK 500 12 LYS A 47 -83.27 -82.05 REMARK 500 12 HIS A 130 19.03 -156.29 REMARK 500 12 HIS A 133 -169.52 -114.17 REMARK 500 13 ASN A 2 101.36 72.54 REMARK 500 13 ASN A 50 -173.20 -67.43 REMARK 500 13 HIS A 129 96.82 -65.04 REMARK 500 13 HIS A 130 -72.65 -42.71 REMARK 500 14 TYR A 49 -65.96 69.28 REMARK 500 14 ASN A 50 -130.41 -54.56 REMARK 500 14 ASP A 59 -64.17 -94.65 REMARK 500 14 SER A 126 -74.50 -60.75 REMARK 500 14 HIS A 129 33.20 -93.46 REMARK 500 14 HIS A 130 77.37 50.79 REMARK 500 15 ASN A 2 165.11 179.75 REMARK 500 15 SER A 9 103.41 -168.37 REMARK 500 15 LEU A 127 12.71 -162.63 REMARK 500 15 HIS A 130 99.91 -58.31 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17304 RELATED DB: BMRB REMARK 900 RELATED ID: OR28 RELATED DB: TARGETDB DBREF 2L69 A 1 134 PDB 2L69 2L69 1 134 SEQRES 1 A 134 MET ASN ILE VAL ILE VAL VAL PHE SER THR ASP GLU GLU SEQRES 2 A 134 THR LEU ARG LYS PHE LYS ASP ILE ILE LYS LYS ASN GLY SEQRES 3 A 134 PHE LYS VAL ARG THR VAL ARG SER PRO GLN GLU LEU LYS SEQRES 4 A 134 ASP SER ILE GLU GLU LEU VAL LYS LYS TYR ASN ALA THR SEQRES 5 A 134 ILE VAL VAL VAL VAL VAL ASP ASP LYS GLU TRP ALA GLU SEQRES 6 A 134 LYS ALA ILE ARG PHE VAL LYS SER LEU GLY ALA GLN VAL SEQRES 7 A 134 LEU ILE ILE ILE TYR ASP GLN ASP GLN ASN ARG LEU GLU SEQRES 8 A 134 GLU PHE SER ARG GLU VAL ARG ARG ARG GLY PHE GLU VAL SEQRES 9 A 134 ARG THR VAL THR SER PRO ASP ASP PHE LYS LYS SER LEU SEQRES 10 A 134 GLU ARG LEU ILE ARG GLU VAL GLY SER LEU GLU HIS HIS SEQRES 11 A 134 HIS HIS HIS HIS HELIX 1 1 ASP A 11 ASN A 25 1 15 HELIX 2 2 SER A 34 VAL A 46 1 13 HELIX 3 3 ASP A 60 GLY A 75 1 16 HELIX 4 4 ASP A 86 ARG A 100 1 15 HELIX 5 5 SER A 109 GLY A 125 1 17 SHEET 1 A 5 LYS A 28 VAL A 32 0 SHEET 2 A 5 THR A 52 VAL A 57 1 O ILE A 53 N LYS A 28 SHEET 3 A 5 ILE A 3 VAL A 7 1 N ILE A 5 O VAL A 54 SHEET 4 A 5 LEU A 79 TYR A 83 1 O LEU A 79 N VAL A 4 SHEET 5 A 5 VAL A 104 VAL A 107 1 O ARG A 105 N ILE A 80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1