HEADER DE NOVO PROTEIN 17-NOV-10 2L6B TITLE NRC CONSENSUS ANKYRIN REPEAT PROTEIN SOLUTION STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NR1C; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: BL21(DE3) KEYWDS NRC, ANKYRIN, CONSENSUS, REPEAT PROTEIN, ISING MODEL, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.AKSEL,A.MAJUMDAR,D.BARRICK REVDAT 4 15-MAY-24 2L6B 1 REMARK REVDAT 3 14-JUN-23 2L6B 1 REMARK REVDAT 2 05-FEB-20 2L6B 1 REMARK REVDAT 1 23-MAR-11 2L6B 0 JRNL AUTH T.AKSEL,A.MAJUMDAR,D.BARRICK JRNL TITL THE CONTRIBUTION OF ENTROPY, ENTHALPY, AND HYDROPHOBIC JRNL TITL 2 DESOLVATION TO COOPERATIVITY IN REPEAT-PROTEIN FOLDING. JRNL REF STRUCTURE V. 19 349 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21397186 JRNL DOI 10.1016/J.STR.2010.12.018 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2, CYANA 2, X-PLOR NIH 2.24 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: UNIO+CYANA USED TOGETHER FOR INITIAL REMARK 3 STRUCTURE DETERMINATION, XPLOR-NIH USED FOR FINAL REFINEMENT REMARK 4 REMARK 4 2L6B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000102011. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 63; 63 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 25 MM SODIUM PHOSPHATE, 25 MM REMARK 210 SODIUM CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 HNCO; 3D HNHA; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D HCCH-TOCSY; REMARK 210 3D H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2, UNIO 2.0.1, CARA 1.8.4, REMARK 210 MODELFREE 4.2, NMRPIPE 5.5, TALOS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, DGSA REMARK 210 -DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 5 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 HIS A 2 REMARK 465 MET A 3 REMARK 465 HIS A 110 REMARK 465 HIS A 111 REMARK 465 HIS A 112 REMARK 465 HIS A 113 REMARK 465 HIS A 114 REMARK 465 HIS A 115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H THR A 11 HD1 HIS A 14 1.22 REMARK 500 O GLU A 79 H LYS A 83 1.48 REMARK 500 O LEU A 60 HZ2 LYS A 64 1.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 LYS A 27 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 -143.69 58.10 REMARK 500 1 ASP A 8 42.41 -164.13 REMARK 500 1 ASN A 10 168.02 -46.09 REMARK 500 1 HIS A 21 57.67 -90.60 REMARK 500 1 ALA A 33 138.30 -24.92 REMARK 500 1 SER A 39 -74.40 -60.42 REMARK 500 1 LYS A 40 -40.32 -141.08 REMARK 500 1 ALA A 70 72.04 -56.43 REMARK 500 1 HIS A 80 -75.13 -58.86 REMARK 500 1 LEU A 81 -17.77 -41.44 REMARK 500 1 LYS A 97 -6.68 -55.44 REMARK 500 1 ALA A 99 18.12 51.87 REMARK 500 1 ASP A 100 -17.88 -159.13 REMARK 500 1 ARG A 104 -71.33 -68.18 REMARK 500 1 SER A 105 -80.57 56.75 REMARK 500 2 SER A 6 -85.95 51.94 REMARK 500 2 ASP A 8 56.88 -161.15 REMARK 500 2 HIS A 21 48.81 -99.08 REMARK 500 2 VAL A 25 -33.89 -39.01 REMARK 500 2 SER A 39 -92.60 -61.75 REMARK 500 2 ASP A 41 -75.91 -107.13 REMARK 500 2 PRO A 45 -39.91 -37.74 REMARK 500 2 LEU A 48 -17.71 -47.24 REMARK 500 2 ALA A 66 165.67 -42.11 REMARK 500 2 SER A 72 -164.10 -61.88 REMARK 500 2 HIS A 87 47.41 -93.75 REMARK 500 2 HIS A 88 -14.99 -46.47 REMARK 500 2 LYS A 97 3.18 57.56 REMARK 500 2 ALA A 99 17.68 -176.96 REMARK 500 2 ASP A 100 39.29 -148.56 REMARK 500 2 VAL A 101 -33.41 -143.57 REMARK 500 2 ALA A 103 -77.43 -73.30 REMARK 500 2 SER A 105 -41.99 158.93 REMARK 500 2 TRP A 106 -106.87 44.75 REMARK 500 2 SER A 108 -167.71 54.28 REMARK 500 3 LYS A 7 -94.03 46.27 REMARK 500 3 ASN A 10 -166.78 -53.15 REMARK 500 3 PRO A 12 -6.05 -59.57 REMARK 500 3 HIS A 21 42.81 -84.84 REMARK 500 3 ALA A 22 -31.23 -39.36 REMARK 500 3 ALA A 33 157.99 -43.53 REMARK 500 3 ASN A 36 33.76 -148.73 REMARK 500 3 LYS A 40 -35.47 -141.09 REMARK 500 3 ASP A 41 -69.46 -106.82 REMARK 500 3 PRO A 45 -38.39 -39.42 REMARK 500 3 ASN A 52 -7.17 -57.05 REMARK 500 3 SER A 72 -164.63 -59.47 REMARK 500 3 PRO A 78 -26.29 -36.12 REMARK 500 3 HIS A 88 -16.43 -48.22 REMARK 500 3 LEU A 94 -63.48 -96.84 REMARK 500 REMARK 500 THIS ENTRY HAS 317 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17306 RELATED DB: BMRB DBREF 2L6B A 1 115 PDB 2L6B 2L6B 1 115 SEQRES 1 A 115 GLY HIS MET TRP GLY SER LYS ASP GLY ASN THR PRO LEU SEQRES 2 A 115 HIS ASN ALA ALA LYS ASN GLY HIS ALA GLU GLU VAL LYS SEQRES 3 A 115 LYS LEU LEU SER LYS GLY ALA ASP VAL ASN ALA ARG SER SEQRES 4 A 115 LYS ASP GLY ASN THR PRO LEU HIS LEU ALA ALA LYS ASN SEQRES 5 A 115 GLY HIS ALA GLU ILE VAL LYS LEU LEU LEU ALA LYS GLY SEQRES 6 A 115 ALA ASP VAL ASN ALA ARG SER LYS ASP GLY ASN THR PRO SEQRES 7 A 115 GLU HIS LEU ALA LYS LYS ASN GLY HIS HIS GLU ILE VAL SEQRES 8 A 115 LYS LEU LEU ASP ALA LYS GLY ALA ASP VAL ASN ALA ARG SEQRES 9 A 115 SER TRP GLY SER SER HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 11 GLY A 20 1 10 HELIX 2 2 HIS A 21 LEU A 29 1 9 HELIX 3 3 LEU A 46 LYS A 51 1 6 HELIX 4 4 HIS A 54 LEU A 62 1 9 HELIX 5 5 GLU A 79 LYS A 84 1 6 HELIX 6 6 HIS A 87 ALA A 96 1 10 HELIX 7 7 ASP A 100 SER A 105 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1