HEADER STRUCTURE GENOMICS, UNKNOWN FUNCTION 23-NOV-10 2L6N TITLE NMR SOLUTION STRUCTURE OF THE PROTEIN YP_001092504.1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YP_001092504.1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA LOIHICA; SOURCE 3 ORGANISM_TAXID: 323850; SOURCE 4 STRAIN: PV-4; SOURCE 5 GENE: SHEW_0373; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSPEEDET KEYWDS PJ06155C, DUF971, STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, STRUCTURE KEYWDS 3 GENOMICS, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.MOHANTY,P.SERRANO,M.GERALT,R.HORST,K.WUTHRICH,JOINT CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-MAY-24 2L6N 1 REMARK SEQADV REVDAT 3 22-FEB-12 2L6N 1 HEADER REVDAT 2 03-AUG-11 2L6N 1 VERSN KEYWDS REVDAT 1 19-JAN-11 2L6N 0 JRNL AUTH B.MOHANTY,P.SERRANO,M.GERALT,R.HORST,K.WUTHRICH JRNL TITL NMR SOLUTION STRUCTURE OF THE PROTEIN YP_001092504.1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, UNIO 2.0.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HERRMANN AND WUTHRICH (UNIO) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: OPALP REMARK 4 REMARK 4 2L6N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000102023. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.113 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM CHLORIDE, 20 MM REMARK 210 SODIUM PHOSPHATE, 4.5 MM SODIUM REMARK 210 AZIDE, 1.2 MM [U-98% 13C; U-98% REMARK 210 15N] PROTEIN-YP_001092504.1-4, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 4D APSY-HACANH; 5D APSY-HACACONH; REMARK 210 5D APSY-CBCACONH; 15N RESOLVED REMARK 210 [1H,1H]-NOESY; 13CALI RESOLVED REMARK 210 [1H,1H]-NOESY; 13CARO RESOLVED REMARK 210 [1H,1H]-NOESY; 15 N {1H} - NOE REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UNIO 2.0.1, OPAL, CARA, TOPSPIN REMARK 210 1.3 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : CYANA TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 HIS A 60 CB - CG - CD2 ANGL. DEV. = -13.8 DEGREES REMARK 500 9 LEU A 110 CB - CG - CD1 ANGL. DEV. = 10.8 DEGREES REMARK 500 11 LEU A 110 CB - CG - CD1 ANGL. DEV. = 10.3 DEGREES REMARK 500 14 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 14 GLU A 121 CB - CA - C ANGL. DEV. = 12.0 DEGREES REMARK 500 15 TYR A 96 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 15 TYR A 130 CB - CG - CD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 17 LEU A 105 CB - CG - CD2 ANGL. DEV. = 11.0 DEGREES REMARK 500 18 LEU A 105 CB - CG - CD2 ANGL. DEV. = 10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 47 -85.78 -139.03 REMARK 500 1 VAL A 49 -72.41 -112.86 REMARK 500 1 HIS A 50 6.76 174.19 REMARK 500 1 ASN A 63 62.51 -171.58 REMARK 500 1 ASN A 74 8.38 57.18 REMARK 500 1 HIS A 85 80.94 -153.66 REMARK 500 2 TYR A 43 49.28 -87.14 REMARK 500 2 SER A 46 62.30 -110.73 REMARK 500 2 ALA A 47 -79.98 -137.90 REMARK 500 2 GLU A 48 44.84 -80.05 REMARK 500 2 ASN A 74 13.47 58.38 REMARK 500 2 THR A 87 -3.08 67.28 REMARK 500 2 ARG A 120 68.88 -118.71 REMARK 500 2 LEU A 123 -2.62 -157.38 REMARK 500 3 SER A 6 95.48 -66.67 REMARK 500 3 ASP A 7 16.02 -144.14 REMARK 500 3 SER A 44 163.45 55.89 REMARK 500 3 SER A 46 -153.30 -108.47 REMARK 500 3 ALA A 47 -61.52 75.38 REMARK 500 3 HIS A 50 23.84 48.95 REMARK 500 3 ASN A 63 75.20 -166.00 REMARK 500 3 LEU A 89 115.23 74.83 REMARK 500 3 ALA A 111 -71.44 -60.10 REMARK 500 3 LEU A 123 -2.02 -152.61 REMARK 500 4 GLN A 5 -167.90 -79.48 REMARK 500 4 LEU A 14 104.23 61.29 REMARK 500 4 ALA A 47 -83.72 -126.38 REMARK 500 4 HIS A 52 125.02 73.29 REMARK 500 4 PRO A 55 -166.74 -69.06 REMARK 500 4 HIS A 60 -171.75 -67.61 REMARK 500 4 LYS A 62 -73.79 -43.21 REMARK 500 4 ASN A 63 59.71 -152.76 REMARK 500 4 HIS A 85 76.99 -116.60 REMARK 500 4 ASP A 86 12.16 -67.24 REMARK 500 4 ARG A 120 85.32 -157.74 REMARK 500 4 LEU A 123 27.09 -159.53 REMARK 500 4 ALA A 127 23.63 -75.28 REMARK 500 5 MET A 2 -164.18 59.46 REMARK 500 5 SER A 6 55.66 -92.30 REMARK 500 5 TYR A 43 41.30 -101.43 REMARK 500 5 ALA A 47 -85.90 -148.12 REMARK 500 5 HIS A 50 15.77 52.45 REMARK 500 5 ASN A 63 88.22 -153.84 REMARK 500 5 ASN A 65 25.12 -143.91 REMARK 500 5 ILE A 66 145.22 55.62 REMARK 500 5 LEU A 89 107.80 67.73 REMARK 500 5 LEU A 123 4.35 -163.14 REMARK 500 5 MET A 126 19.64 -140.66 REMARK 500 5 ALA A 127 34.44 -148.03 REMARK 500 6 TYR A 43 48.81 -90.01 REMARK 500 REMARK 500 THIS ENTRY HAS 211 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 60 LYS A 61 4 141.47 REMARK 500 HIS A 85 ASP A 86 11 -142.25 REMARK 500 ASN A 101 GLN A 102 14 -149.68 REMARK 500 ASN A 101 GLN A 102 19 -149.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 109 0.08 SIDE CHAIN REMARK 500 2 TYR A 43 0.07 SIDE CHAIN REMARK 500 2 TYR A 109 0.07 SIDE CHAIN REMARK 500 3 TYR A 109 0.08 SIDE CHAIN REMARK 500 4 HIS A 60 0.10 SIDE CHAIN REMARK 500 5 ARG A 18 0.16 SIDE CHAIN REMARK 500 5 TYR A 43 0.07 SIDE CHAIN REMARK 500 5 TYR A 90 0.09 SIDE CHAIN REMARK 500 7 ARG A 21 0.16 SIDE CHAIN REMARK 500 7 TYR A 43 0.12 SIDE CHAIN REMARK 500 7 TYR A 90 0.07 SIDE CHAIN REMARK 500 7 TYR A 130 0.11 SIDE CHAIN REMARK 500 8 ARG A 114 0.08 SIDE CHAIN REMARK 500 9 HIS A 131 0.09 SIDE CHAIN REMARK 500 10 ARG A 120 0.10 SIDE CHAIN REMARK 500 11 ARG A 41 0.09 SIDE CHAIN REMARK 500 11 TYR A 109 0.07 SIDE CHAIN REMARK 500 12 ARG A 21 0.16 SIDE CHAIN REMARK 500 12 ARG A 112 0.08 SIDE CHAIN REMARK 500 13 ARG A 21 0.15 SIDE CHAIN REMARK 500 13 TYR A 43 0.09 SIDE CHAIN REMARK 500 14 ARG A 21 0.08 SIDE CHAIN REMARK 500 14 ARG A 114 0.11 SIDE CHAIN REMARK 500 15 ARG A 18 0.08 SIDE CHAIN REMARK 500 15 ARG A 120 0.12 SIDE CHAIN REMARK 500 16 TYR A 43 0.07 SIDE CHAIN REMARK 500 16 TYR A 90 0.10 SIDE CHAIN REMARK 500 17 ARG A 21 0.14 SIDE CHAIN REMARK 500 18 ARG A 21 0.14 SIDE CHAIN REMARK 500 19 PHE A 27 0.08 SIDE CHAIN REMARK 500 20 TYR A 109 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17317 RELATED DB: BMRB REMARK 900 RELATED ID: 374407 RELATED DB: TARGETDB DBREF 2L6N A 2 132 UNP A3Q9U7 A3Q9U7_SHELP 1 131 SEQADV 2L6N GLY A 1 UNP A3Q9U7 EXPRESSION TAG SEQRES 1 A 132 GLY MET THR PRO GLN SER ASP THR PRO LYS VAL THR GLY SEQRES 2 A 132 LEU LYS LEU LYS ARG LYS SER ARG GLN LEU GLU ILE SER SEQRES 3 A 132 PHE ASP ASN GLY GLN GLN PHE THR LEU SER CYS GLU LEU SEQRES 4 A 132 LEU ARG VAL TYR SER PRO SER ALA GLU VAL HIS GLY HIS SEQRES 5 A 132 GLY ASN PRO VAL LEU VAL THR HIS LYS LYS ASN VAL ASN SEQRES 6 A 132 ILE ASN ALA ILE THR PRO VAL GLY ASN TYR ALA VAL LYS SEQRES 7 A 132 LEU VAL PHE ASP ASP GLY HIS ASP THR GLY LEU TYR SER SEQRES 8 A 132 TRP LYS VAL LEU TYR ASP LEU ALA SER ASN GLN VAL ASP SEQRES 9 A 132 LEU TRP GLU ASN TYR LEU ALA ARG LEU ARG ALA ALA LYS SEQRES 10 A 132 ALA SER ARG GLU PRO LEU ILE ASP MET ALA VAL LYS TYR SEQRES 11 A 132 HIS THR HELIX 1 1 ARG A 18 SER A 20 5 3 HELIX 2 2 CYS A 37 TYR A 43 1 7 HELIX 3 3 TRP A 92 SER A 100 1 9 HELIX 4 4 VAL A 103 LYS A 117 1 15 SHEET 1 A 3 VAL A 11 LYS A 17 0 SHEET 2 A 3 GLN A 22 PHE A 27 -1 O GLU A 24 N LYS A 15 SHEET 3 A 3 GLN A 32 SER A 36 -1 O LEU A 35 N LEU A 23 SHEET 1 B 3 ILE A 66 VAL A 72 0 SHEET 2 B 3 ALA A 76 PHE A 81 -1 O LYS A 78 N THR A 70 SHEET 3 B 3 TYR A 90 SER A 91 -1 O TYR A 90 N VAL A 77 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1