HEADER VIRAL PROTEIN 24-NOV-10 2L6R TITLE HIGH RESOLUTION NMR STRUCTURE OF GPW (W PROTEIN OF BACTERIOPHAGE TITLE 2 LAMBDA) AT ACIDIC PH COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAD-TO-TAIL JOINING PROTEIN W (GPW) FROM BACTERIOPHAGE COMPND 3 ORIGIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 1-62; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA; SOURCE 3 ORGANISM_TAXID: 10710; SOURCE 4 GENE: W; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PBAT VECTOR KEYWDS GPW, ATOM BY ATOM ANALYSIS, FAST PROTEIN FOLDING, DOWNHILL PROTEIN KEYWDS 2 FOLDING, FOLDING SIMULATIONS, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR L.SBORGI,A.VERMA,V.MUNOZ,E.DE ALBA REVDAT 2 01-MAY-24 2L6R 1 REMARK REVDAT 1 30-NOV-11 2L6R 0 JRNL AUTH L.SBORGI,A.VERMA,V.MUNOZ,E.DE ALBA JRNL TITL HIGH RESOLUTION NMR STRUCTURE OF GPW (W PROTEIN OF JRNL TITL 2 BACTERIOPHAGE LAMBDA) AT ACIDIC PH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L6R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000102027. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293.1 REMARK 210 PH : 3.5 REMARK 210 IONIC STRENGTH : 0.02 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] GPW-1, 20 MM REMARK 210 GLYCINE BUFFER, 90% H2O/10% D2O; REMARK 210 1 MM [U-13C; U-15N] GPW-2, 20 MM REMARK 210 GLYCINE BUFFER, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D C(CO)NH; 3D HNCO; REMARK 210 3D HBHA(CO)NH; 3D H(CCO)NH; 3D REMARK 210 1H-15N NOESY; 4D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, PIPP, X-PLOR NIH, REMARK 210 TALOS+ REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING, DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN A 27 HE ARG A 32 1.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 57 24.84 -72.04 REMARK 500 1 GLN A 58 -53.06 71.23 REMARK 500 1 ARG A 59 -70.03 67.25 REMARK 500 1 ARG A 60 -154.80 -170.80 REMARK 500 1 ARG A 61 178.21 -51.68 REMARK 500 2 VAL A 2 -39.26 -148.19 REMARK 500 2 ASP A 29 25.96 42.85 REMARK 500 2 THR A 54 30.69 -91.91 REMARK 500 2 THR A 57 55.23 -174.87 REMARK 500 2 ARG A 59 81.64 -167.05 REMARK 500 2 ARG A 61 98.54 57.50 REMARK 500 3 LYS A 21 99.87 -47.94 REMARK 500 3 THR A 57 -10.86 -153.65 REMARK 500 3 ARG A 60 -127.81 47.93 REMARK 500 4 LYS A 21 93.11 -50.80 REMARK 500 4 ARG A 59 105.60 56.54 REMARK 500 4 ARG A 60 48.50 -171.15 REMARK 500 5 VAL A 2 -39.59 -147.65 REMARK 500 5 LYS A 21 98.64 -47.97 REMARK 500 5 THR A 57 74.90 52.10 REMARK 500 5 GLN A 58 134.93 61.17 REMARK 500 5 ARG A 60 -113.76 -167.06 REMARK 500 5 ARG A 61 73.35 54.03 REMARK 500 6 LYS A 21 108.51 -51.61 REMARK 500 6 ARG A 59 -65.11 -151.35 REMARK 500 6 ARG A 61 40.59 -161.34 REMARK 500 7 VAL A 2 -22.81 -147.85 REMARK 500 7 THR A 57 82.42 -153.57 REMARK 500 7 GLN A 58 85.35 -160.55 REMARK 500 7 ARG A 59 -174.07 50.15 REMARK 500 7 ARG A 60 -22.66 -162.67 REMARK 500 7 ARG A 61 -150.50 53.59 REMARK 500 8 ASP A 29 89.19 -50.51 REMARK 500 8 ARG A 31 149.09 -171.40 REMARK 500 8 THR A 54 30.40 -83.15 REMARK 500 8 ARG A 61 89.26 53.51 REMARK 500 9 THR A 57 69.11 -177.48 REMARK 500 9 ARG A 59 -17.02 -171.10 REMARK 500 9 ARG A 61 -74.90 -161.98 REMARK 500 10 ASP A 29 87.35 -53.28 REMARK 500 10 ARG A 31 147.38 -170.86 REMARK 500 10 MET A 56 140.50 56.75 REMARK 500 10 THR A 57 -91.82 -89.65 REMARK 500 10 GLN A 58 -153.97 -89.74 REMARK 500 10 ARG A 60 45.25 -159.75 REMARK 500 11 ASP A 29 86.06 -54.07 REMARK 500 11 ARG A 31 146.05 -170.98 REMARK 500 11 THR A 54 30.06 -81.67 REMARK 500 11 THR A 57 -8.92 -148.48 REMARK 500 11 GLN A 58 -38.30 -155.49 REMARK 500 REMARK 500 THIS ENTRY HAS 97 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2L6Q RELATED DB: PDB REMARK 900 SAME PROTEIN AT NEUTRAL PH DBREF 2L6R A 1 62 PDB 2L6R 2L6R 1 62 SEQRES 1 A 62 MET VAL ARG GLN GLU GLU LEU ALA ALA ALA ARG ALA ALA SEQRES 2 A 62 LEU HIS ASP LEU MET THR GLY LYS ARG VAL ALA THR VAL SEQRES 3 A 62 GLN LYS ASP GLY ARG ARG VAL GLU PHE THR ALA THR SER SEQRES 4 A 62 VAL SER ASP LEU LYS LYS TYR ILE ALA GLU LEU GLU VAL SEQRES 5 A 62 GLN THR GLY MET THR GLN ARG ARG ARG GLY HELIX 1 1 MET A 1 THR A 19 1 19 HELIX 2 2 THR A 36 THR A 38 5 3 HELIX 3 3 SER A 39 THR A 54 1 16 SHEET 1 A 2 ALA A 24 LYS A 28 0 SHEET 2 A 2 ARG A 31 PHE A 35 -1 O ARG A 31 N LYS A 28 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1