HEADER MEMBRANE PROTEIN 13-DEC-10 2L7J TITLE SOLUTION STRUCTURE OF THE THIRD IMMUNOGLOBULIN-LIKE DOMAIN OF NECTIN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLIOVIRUS RECEPTOR-RELATED 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 241-334; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: C57BL/6; SOURCE 6 GENE: PVRL1; SOURCE 7 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: KM71H; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PPICZALPHA KEYWDS CELLULAR ADHESION MOLECULE, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR O.CLAUSEN,F.M.POULSEN REVDAT 2 14-JUN-23 2L7J 1 REMARK SEQADV REVDAT 1 14-DEC-11 2L7J 0 JRNL AUTH O.CLAUSEN,F.M.POULSEN JRNL TITL SOLUTION STRUCTURE OF THE THIRD IMMUNOGLOBULIN-LIKE DOMAIN JRNL TITL 2 OF NECTIN-1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR, ARIA, CYANA REMARK 3 AUTHORS : VARIAN (VNMR), LINGE, O'DONOGHUE AND NILGES REMARK 3 (ARIA), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L7J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000102054. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 10 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 0.02 V/V SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HN(CO)CA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, PRONTO, TALOS, NMRDRAW, REMARK 210 CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 276 -76.35 -50.12 REMARK 500 1 ASN A 297 -126.07 60.66 REMARK 500 2 PRO A 276 -95.39 -65.66 REMARK 500 2 ASN A 297 -103.96 52.71 REMARK 500 3 PRO A 276 -91.52 -61.84 REMARK 500 3 ASN A 297 -129.18 58.85 REMARK 500 4 PRO A 276 -90.50 -53.50 REMARK 500 4 ASN A 297 -104.31 54.40 REMARK 500 4 THR A 334 97.22 -53.30 REMARK 500 5 GLN A 261 53.03 -104.05 REMARK 500 5 VAL A 265 30.29 -88.79 REMARK 500 5 PRO A 276 -83.80 -56.20 REMARK 500 5 ALA A 277 130.51 -176.66 REMARK 500 5 ASN A 297 -113.87 52.32 REMARK 500 5 ARG A 303 55.10 -90.20 REMARK 500 6 ARG A 262 139.84 -170.65 REMARK 500 6 PRO A 276 -90.25 -61.41 REMARK 500 6 ALA A 277 140.67 -173.82 REMARK 500 6 ASN A 297 -106.42 51.64 REMARK 500 6 ARG A 303 49.12 -82.73 REMARK 500 7 PRO A 276 -74.07 -50.22 REMARK 500 7 ALA A 277 146.22 -179.36 REMARK 500 7 ASN A 297 -132.01 55.46 REMARK 500 8 PRO A 276 -83.57 -59.39 REMARK 500 8 ALA A 277 138.68 -173.33 REMARK 500 8 ASN A 297 -109.95 50.46 REMARK 500 9 GLN A 261 72.17 -104.87 REMARK 500 9 PRO A 276 -149.07 -75.50 REMARK 500 9 ASN A 297 -99.31 63.43 REMARK 500 9 ARG A 303 21.07 -79.75 REMARK 500 10 GLN A 261 75.66 -115.63 REMARK 500 10 PRO A 276 -74.32 -53.56 REMARK 500 10 ALA A 277 120.17 -177.91 REMARK 500 10 ASN A 297 -97.72 54.87 REMARK 500 11 PRO A 276 -159.53 -86.08 REMARK 500 11 ASN A 297 -101.81 57.15 REMARK 500 12 PRO A 276 -151.46 -75.98 REMARK 500 12 ASN A 297 -112.52 50.80 REMARK 500 12 THR A 334 104.59 -48.55 REMARK 500 13 ARG A 262 140.90 -179.45 REMARK 500 13 PRO A 276 -73.82 -53.62 REMARK 500 13 ALA A 277 145.51 -177.51 REMARK 500 13 ASN A 297 -119.30 56.76 REMARK 500 14 GLN A 261 54.34 -91.67 REMARK 500 14 PRO A 276 -94.92 -63.16 REMARK 500 14 ASN A 297 -113.93 43.95 REMARK 500 15 GLN A 261 65.49 -119.19 REMARK 500 15 PRO A 276 -91.41 -61.10 REMARK 500 15 ASN A 297 -110.30 56.48 REMARK 500 16 PRO A 276 -84.03 -54.95 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17358 RELATED DB: BMRB DBREF 2L7J A 241 334 UNP Q6P9M9 Q6P9M9_MOUSE 241 334 SEQADV 2L7J HIS A 335 UNP Q6P9M9 EXPRESSION TAG SEQRES 1 A 95 LEU ASN VAL GLN TYR GLU PRO GLU VAL THR ILE GLU GLY SEQRES 2 A 95 PHE ASP GLY ASN TRP TYR LEU GLN ARG THR ASP VAL LYS SEQRES 3 A 95 LEU THR CYS LYS ALA ASP ALA ASN PRO PRO ALA THR GLU SEQRES 4 A 95 TYR HIS TRP THR THR LEU ASN GLY SER LEU PRO LYS GLY SEQRES 5 A 95 VAL GLU ALA GLN ASN ARG THR LEU PHE PHE ARG GLY PRO SEQRES 6 A 95 ILE THR TYR SER LEU ALA GLY THR TYR ILE CYS GLU ALA SEQRES 7 A 95 THR ASN PRO ILE GLY THR ARG SER GLY GLN VAL GLU VAL SEQRES 8 A 95 ASN ILE THR HIS HELIX 1 1 THR A 307 ALA A 311 5 5 SHEET 1 A 4 GLU A 248 GLY A 253 0 SHEET 2 A 4 LEU A 267 ASP A 272 -1 O ASP A 272 N GLU A 248 SHEET 3 A 4 THR A 299 PHE A 302 -1 O LEU A 300 N LEU A 267 SHEET 4 A 4 VAL A 293 GLN A 296 -1 N GLU A 294 O PHE A 301 SHEET 1 B 3 GLU A 279 THR A 284 0 SHEET 2 B 3 GLY A 312 ASN A 320 -1 O GLU A 317 N HIS A 281 SHEET 3 B 3 GLY A 323 VAL A 331 -1 O GLY A 327 N CYS A 316 SSBOND 1 CYS A 269 CYS A 316 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1