HEADER METAL BINDING PROTEIN/TRANSFERASE 13-DEC-10 2L7L TITLE SOLUTION STRUCTURE OF CA2+/CALMODULIN COMPLEXED WITH A PEPTIDE TITLE 2 REPRESENTING THE CALMODULIN-BINDING DOMAIN OF CALMODULIN KINASE I COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHORYLASE KINASE DELTA, ISOFORM CRA_A, CALMODULIN 3, COMPND 5 PHOSPHORYLASE KINASE DELTA, ISOFORM CRA_B, CDNA FLJ61744; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE 1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: CALMODULIN-BINDING RESIDUES 299-320; COMPND 11 SYNONYM: CAM KINASE I, CAM-KI, CAM KINASE I ALPHA, CAMKI-ALPHA; COMPND 12 EC: 2.7.11.17; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CALM1, CALM3, HCG_20313, HCG_21749; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET30B(+); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 12 ORGANISM_COMMON: RAT; SOURCE 13 ORGANISM_TAXID: 10116 KEYWDS CALMODULIN COMPLEX, CALMODULIN-PEPTIDE COMPLEX, CAMKI, METAL BINDING KEYWDS 2 PROTEIN-TRANSFERASE COMPLEX EXPDTA SOLUTION NMR AUTHOR J.L.GIFFORD,H.ISHIDA,H.J.VOGEL REVDAT 3 15-MAY-24 2L7L 1 REMARK REVDAT 2 14-JUN-23 2L7L 1 REMARK LINK REVDAT 1 18-MAY-11 2L7L 0 JRNL AUTH J.L.GIFFORD,H.ISHIDA,H.J.VOGEL JRNL TITL FAST METHIONINE-BASED SOLUTION STRUCTURE DETERMINATION OF JRNL TITL 2 CALCIUM-CALMODULIN COMPLEXES. JRNL REF J.BIOMOL.NMR V. 50 71 2011 JRNL REFN ISSN 0925-2738 JRNL PMID 21360154 JRNL DOI 10.1007/S10858-011-9495-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CYANA, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L7L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000102056. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303 REMARK 210 PH : 6.8; 6.8 REMARK 210 IONIC STRENGTH : 0.1; 0.3 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.95 MM [U-13C; U-15N] PROTEIN, REMARK 210 1.05 MM PEPTIDE, 4 MM CALCIUM REMARK 210 ION, 0.5 MM DSS, 100 MM REMARK 210 POTASSIUM CHLORIDE, 20 MM BIS- REMARK 210 TRIS, 0.03 % SODIUM AZIDE, 90% REMARK 210 H2O/10% D2O; 0.66 MM [U-2H; U- REMARK 210 15N] PROTEIN, 0.40 MM PEPTIDE, REMARK 210 20 MM BIS-TRIS, 100 MM POTASSIUM REMARK 210 CHLORIDE, 4 MM CALCIUM ION, 0.03 REMARK 210 % SODIUM AZIDE, 0.5 MM DSS, 90% REMARK 210 H2O/10% D2O; 0.64 MM 1H/13C- REMARK 210 METHYL MET; U-2H; U-15N PROTEIN, REMARK 210 0.83 MM PEPTIDE, 20 MM BIS-TRIS, REMARK 210 100 MM POTASSIUM CHLORIDE, 4 MM REMARK 210 CALCIUM ION, 0.03 % SODIUM AZIDE, REMARK 210 0.5 MM DSS, 100% D2O; 0.95 MM REMARK 210 [U-13C; U-15N] PROTEIN, 1.05 MM REMARK 210 PEPTIDE, 20 MM BIS-TRIS, 300 MM REMARK 210 POTASSIUM CHLORIDE, 4 MM CALCIUM REMARK 210 ION, 0.03 % SODIUM AZIDE, 0.5 MM REMARK 210 DSS, 90% H2O/10% D2O; 0.95 MM [U- REMARK 210 13C; U-15N] PROTEIN, 1.05 MM REMARK 210 PEPTIDE, 20 MM BIS-TRIS, 300 MM REMARK 210 POTASSIUM CHLORIDE, 4 MM CALCIUM REMARK 210 ION, 0.03 % SODIUM AZIDE, 0.5 MM REMARK 210 DSS, 16 W/V PF1 PHAGE, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H COSY; 3D CBCA(CO)NH; 3D REMARK 210 C(CO)NH; 3D HNCO; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 3D 1H- REMARK 210 13C NOESY; 3D HN(CA)CO; 2D HMBC; REMARK 210 3D LRCH; F2-FILTERED 2D 1H-1H REMARK 210 NOESY; 2D 1H-15N IPAP HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CYANA, X-PLOR NIH, REMARK 210 PROCHECKNMR, TALOS, MOLMOL, REMARK 210 XWINNMR REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING A COMBINATION OF NOE REMARK 210 AND RESIDUAL DIPOLAR COUPLING RESTRAINTS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 85 H PHE A 89 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 39 24.49 -68.10 REMARK 500 THR A 79 103.92 -42.25 REMARK 500 ASP A 80 75.02 -100.32 REMARK 500 GLU A 82 -70.49 -65.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD2 REMARK 620 2 ASP A 22 OD1 86.2 REMARK 620 3 ASP A 22 OD2 134.1 49.1 REMARK 620 4 ASP A 24 OD2 103.9 74.1 59.5 REMARK 620 5 ASP A 24 OD1 57.6 65.4 89.6 47.1 REMARK 620 6 THR A 26 O 54.1 119.4 133.7 74.2 55.1 REMARK 620 7 GLU A 31 OE1 99.7 152.6 124.6 129.0 139.7 84.6 REMARK 620 8 GLU A 31 OE2 147.4 116.8 75.3 104.5 151.3 120.5 49.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 ASP A 56 OD2 46.1 REMARK 620 3 ASP A 58 OD1 53.0 93.0 REMARK 620 4 ASP A 58 OD2 98.6 141.7 48.8 REMARK 620 5 ASN A 60 OD1 59.8 53.8 63.0 99.1 REMARK 620 6 THR A 62 O 99.3 59.0 116.4 131.2 54.3 REMARK 620 7 GLU A 67 OE2 163.2 142.7 124.1 75.4 136.2 96.3 REMARK 620 8 GLU A 67 OE1 125.8 97.5 158.6 118.8 137.6 84.9 49.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD2 REMARK 620 2 ASP A 93 OD1 41.8 REMARK 620 3 ASP A 95 OD1 87.4 46.4 REMARK 620 4 ASP A 95 OD2 131.1 94.3 48.9 REMARK 620 5 ASN A 97 OD1 52.9 51.6 65.7 85.4 REMARK 620 6 TYR A 99 O 52.1 89.4 124.1 130.5 59.3 REMARK 620 7 GLU A 104 OE1 98.0 108.0 118.2 119.8 150.8 105.6 REMARK 620 8 GLU A 104 OE2 141.5 120.9 92.3 71.2 155.3 143.6 49.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 129 OD1 REMARK 620 2 ASP A 131 OD2 72.7 REMARK 620 3 ASP A 131 OD1 46.4 41.9 REMARK 620 4 ASP A 133 OD2 119.2 85.5 79.8 REMARK 620 5 ASP A 133 OD1 80.6 97.2 63.3 46.2 REMARK 620 6 GLN A 135 O 69.7 137.7 96.6 96.4 58.4 REMARK 620 7 GLU A 140 OE2 55.4 53.7 70.8 139.1 131.3 114.4 REMARK 620 8 GLU A 140 OE1 53.8 100.7 97.4 167.5 121.7 71.7 48.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MXE RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF CA2+/CAM BOUND TO CAMKIP REMARK 900 RELATED ID: 5286 RELATED DB: BMRB REMARK 900 BACKBONE ASSIGNMENTS OF CAM:CAMKIP COMPLEX REMARK 900 RELATED ID: 17360 RELATED DB: BMRB DBREF 2L7L A 1 148 UNP B4DJ51 B4DJ51_HUMAN 2 149 DBREF 2L7L B 299 320 UNP Q63450 KCC1A_RAT 299 320 SEQRES 1 A 148 ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE LYS SEQRES 2 A 148 GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY THR SEQRES 3 A 148 ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER LEU SEQRES 4 A 148 GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET ILE SEQRES 5 A 148 ASN GLU VAL ASP ALA ASP GLY ASN GLY THR ILE ASP PHE SEQRES 6 A 148 PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS ASP SEQRES 7 A 148 THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG VAL SEQRES 8 A 148 PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA GLU SEQRES 9 A 148 LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU THR SEQRES 10 A 148 ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP ILE SEQRES 11 A 148 ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL GLN SEQRES 12 A 148 MET MET THR ALA LYS SEQRES 1 B 22 ALA LYS SER LYS TRP LYS GLN ALA PHE ASN ALA THR ALA SEQRES 2 B 22 VAL VAL ARG HIS MET ARG LYS LEU GLN HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HETNAM CA CALCIUM ION FORMUL 3 CA 4(CA 2+) HELIX 1 1 THR A 5 ASP A 20 1 16 HELIX 2 2 THR A 28 LEU A 39 1 12 HELIX 3 3 THR A 44 ASP A 56 1 13 HELIX 4 4 PHE A 65 ASP A 78 1 14 HELIX 5 5 ASP A 80 ASP A 93 1 14 HELIX 6 6 SER A 101 LEU A 112 1 12 HELIX 7 7 THR A 117 ASP A 129 1 13 HELIX 8 8 ASN A 137 MET A 145 1 9 HELIX 9 9 ALA B 299 GLN B 320 1 22 SHEET 1 A 2 THR A 26 ILE A 27 0 SHEET 2 A 2 ILE A 63 ASP A 64 -1 O ILE A 63 N ILE A 27 LINK OD2 ASP A 20 CA CA A 401 1555 1555 2.60 LINK OD1 ASP A 22 CA CA A 401 1555 1555 2.56 LINK OD2 ASP A 22 CA CA A 401 1555 1555 2.62 LINK OD2 ASP A 24 CA CA A 401 1555 1555 2.60 LINK OD1 ASP A 24 CA CA A 401 1555 1555 2.78 LINK O THR A 26 CA CA A 401 1555 1555 2.58 LINK OE1 GLU A 31 CA CA A 401 1555 1555 2.57 LINK OE2 GLU A 31 CA CA A 401 1555 1555 2.60 LINK OD1 ASP A 56 CA CA A 402 1555 1555 2.71 LINK OD2 ASP A 56 CA CA A 402 1555 1555 2.76 LINK OD1 ASP A 58 CA CA A 402 1555 1555 2.60 LINK OD2 ASP A 58 CA CA A 402 1555 1555 2.61 LINK OD1 ASN A 60 CA CA A 402 1555 1555 2.59 LINK O THR A 62 CA CA A 402 1555 1555 2.57 LINK OE2 GLU A 67 CA CA A 402 1555 1555 2.58 LINK OE1 GLU A 67 CA CA A 402 1555 1555 2.58 LINK OD2 ASP A 93 CA CA A 403 1555 1555 2.67 LINK OD1 ASP A 93 CA CA A 403 1555 1555 3.19 LINK OD1 ASP A 95 CA CA A 403 1555 1555 2.58 LINK OD2 ASP A 95 CA CA A 403 1555 1555 2.62 LINK OD1 ASN A 97 CA CA A 403 1555 1555 2.61 LINK O TYR A 99 CA CA A 403 1555 1555 2.55 LINK OE1 GLU A 104 CA CA A 403 1555 1555 2.58 LINK OE2 GLU A 104 CA CA A 403 1555 1555 2.60 LINK OD1 ASP A 129 CA CA A 404 1555 1555 2.59 LINK OD2 ASP A 131 CA CA A 404 1555 1555 2.61 LINK OD1 ASP A 131 CA CA A 404 1555 1555 3.20 LINK OD2 ASP A 133 CA CA A 404 1555 1555 2.61 LINK OD1 ASP A 133 CA CA A 404 1555 1555 2.84 LINK O GLN A 135 CA CA A 404 1555 1555 2.60 LINK OE2 GLU A 140 CA CA A 404 1555 1555 2.61 LINK OE1 GLU A 140 CA CA A 404 1555 1555 2.62 SITE 1 AC1 5 ASP A 20 ASP A 22 ASP A 24 THR A 26 SITE 2 AC1 5 GLU A 31 SITE 1 AC2 5 ASP A 56 ASP A 58 ASN A 60 THR A 62 SITE 2 AC2 5 GLU A 67 SITE 1 AC3 5 ASP A 93 ASP A 95 ASN A 97 TYR A 99 SITE 2 AC3 5 GLU A 104 SITE 1 AC4 5 ASP A 129 ASP A 131 ASP A 133 GLN A 135 SITE 2 AC4 5 GLU A 140 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000