data_2L7V # _entry.id 2L7V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2L7V pdb_00002l7v 10.2210/pdb2l7v/pdb RCSB RCSB102066 ? ? BMRB 17379 ? 10.13018/BMR17379 WWPDB D_1000102066 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-11-09 2 'Structure model' 1 1 2011-11-16 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_nmr_software 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.value' 9 3 'Structure model' '_struct_conn.pdbx_dist_value' 10 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 15 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 16 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2L7V _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-12-23 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_id 17379 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dai, J.' 1 'Carver, M.' 2 'Mathad, R.' 3 'Yang, D.' 4 # _citation.id primary _citation.title 'Solution Structure of a 2:1 Quindoline-c-MYC G-Quadruplex: Insights into G-Quadruplex-Interactive Small Molecule Drug Design.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 133 _citation.page_first 17673 _citation.page_last 17680 _citation.year 2011 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21967482 _citation.pdbx_database_id_DOI 10.1021/ja205646q # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dai, J.' 1 ? primary 'Carver, M.' 2 ? primary 'Hurley, L.H.' 3 ? primary 'Yang, D.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3') ; 7008.510 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 3 non-polymer syn "N,N-diethyl-N'-(10H-indolo[3,2-b]quinolin-11-yl)ethane-1,2-diamine" 332.442 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DT)(DG)(DA)(DG)(DG)(DG)(DT)(DG)(DG)(DG)(DT)(DA)(DG)(DG)(DG)(DT)(DG)(DG)(DG)(DT) (DA)(DA) ; _entity_poly.pdbx_seq_one_letter_code_can TGAGGGTGGGTAGGGTGGGTAA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 "N,N-diethyl-N'-(10H-indolo[3,2-b]quinolin-11-yl)ethane-1,2-diamine" QUL # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DA n 1 4 DG n 1 5 DG n 1 6 DG n 1 7 DT n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DT n 1 12 DA n 1 13 DG n 1 14 DG n 1 15 DG n 1 16 DT n 1 17 DG n 1 18 DG n 1 19 DG n 1 20 DT n 1 21 DA n 1 22 DA n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 QUL non-polymer . "N,N-diethyl-N'-(10H-indolo[3,2-b]quinolin-11-yl)ethane-1,2-diamine" ? 'C21 H24 N4' 332.442 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 4 4 DT DT A . n A 1 2 DG 2 5 5 DG DG A . n A 1 3 DA 3 6 6 DA DA A . n A 1 4 DG 4 7 7 DG DG A . n A 1 5 DG 5 8 8 DG DG A . n A 1 6 DG 6 9 9 DG DG A . n A 1 7 DT 7 10 10 DT DT A . n A 1 8 DG 8 11 11 DG DG A . n A 1 9 DG 9 12 12 DG DG A . n A 1 10 DG 10 13 13 DG DG A . n A 1 11 DT 11 14 14 DT DT A . n A 1 12 DA 12 15 15 DA DA A . n A 1 13 DG 13 16 16 DG DG A . n A 1 14 DG 14 17 17 DG DG A . n A 1 15 DG 15 18 18 DG DG A . n A 1 16 DT 16 19 19 DT DT A . n A 1 17 DG 17 20 20 DG DG A . n A 1 18 DG 18 21 21 DG DG A . n A 1 19 DG 19 22 22 DG DG A . n A 1 20 DT 20 23 23 DT DT A . n A 1 21 DA 21 24 24 DA DA A . n A 1 22 DA 22 25 25 DA DA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 26 26 K K A . C 2 K 1 27 27 K K A . D 3 QUL 1 1 1 QUL QUL A . E 3 QUL 1 2 2 QUL QUL A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2L7V _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2L7V _struct.title 'Quindoline/G-quadruplex complex' _struct.pdbx_model_details 'fewest violations, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2L7V _struct_keywords.pdbx_keywords DNA/INHIBITOR _struct_keywords.text 'c-Myc promoter, DNA-INHIBITOR complex, c-Myc promoter G-quadruplex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2L7V _struct_ref.pdbx_db_accession 2L7V _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2L7V _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2L7V _struct_ref_seq.db_align_beg 4 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 25 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 25 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 4 O6 ? ? ? 1_555 B K . K ? ? A DG 7 A K 26 1_555 ? ? ? ? ? ? ? 2.687 ? ? metalc2 metalc ? ? A DG 5 O6 ? ? ? 1_555 B K . K ? ? A DG 8 A K 26 1_555 ? ? ? ? ? ? ? 2.813 ? ? metalc3 metalc ? ? A DG 5 O6 ? ? ? 1_555 C K . K ? ? A DG 8 A K 27 1_555 ? ? ? ? ? ? ? 3.215 ? ? metalc4 metalc ? ? A DG 6 O6 ? ? ? 1_555 C K . K ? ? A DG 9 A K 27 1_555 ? ? ? ? ? ? ? 2.611 ? ? metalc5 metalc ? ? A DG 8 O6 ? ? ? 1_555 B K . K ? ? A DG 11 A K 26 1_555 ? ? ? ? ? ? ? 2.727 ? ? metalc6 metalc ? ? A DG 9 O6 ? ? ? 1_555 B K . K ? ? A DG 12 A K 26 1_555 ? ? ? ? ? ? ? 2.800 ? ? metalc7 metalc ? ? A DG 9 O6 ? ? ? 1_555 C K . K ? ? A DG 12 A K 27 1_555 ? ? ? ? ? ? ? 3.327 ? ? metalc8 metalc ? ? A DG 10 O6 ? ? ? 1_555 C K . K ? ? A DG 13 A K 27 1_555 ? ? ? ? ? ? ? 2.588 ? ? metalc9 metalc ? ? A DG 13 O6 ? ? ? 1_555 B K . K ? ? A DG 16 A K 26 1_555 ? ? ? ? ? ? ? 2.560 ? ? metalc10 metalc ? ? A DG 14 O6 ? ? ? 1_555 B K . K ? ? A DG 17 A K 26 1_555 ? ? ? ? ? ? ? 2.839 ? ? metalc11 metalc ? ? A DG 14 O6 ? ? ? 1_555 C K . K ? ? A DG 17 A K 27 1_555 ? ? ? ? ? ? ? 2.760 ? ? metalc12 metalc ? ? A DG 15 O6 ? ? ? 1_555 C K . K ? ? A DG 18 A K 27 1_555 ? ? ? ? ? ? ? 2.622 ? ? metalc13 metalc ? ? A DG 17 O6 ? ? ? 1_555 B K . K ? ? A DG 20 A K 26 1_555 ? ? ? ? ? ? ? 2.774 ? ? metalc14 metalc ? ? A DG 18 O6 ? ? ? 1_555 B K . K ? ? A DG 21 A K 26 1_555 ? ? ? ? ? ? ? 2.950 ? ? metalc15 metalc ? ? A DG 18 O6 ? ? ? 1_555 C K . K ? ? A DG 21 A K 27 1_555 ? ? ? ? ? ? ? 2.837 ? ? metalc16 metalc ? ? A DG 19 O6 ? ? ? 1_555 C K . K ? ? A DG 22 A K 27 1_555 ? ? ? ? ? ? ? 2.615 ? ? hydrog1 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 7 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 7 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 17 N2 ? ? A DG 7 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 17 N1 ? ? A DG 7 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 8 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 8 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 18 N2 ? ? A DG 8 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 18 N1 ? ? A DG 8 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 9 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 9 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 6 N7 ? ? ? 1_555 A DG 19 N2 ? ? A DG 9 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DG 19 N1 ? ? A DG 9 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 13 O6 ? ? A DG 11 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 13 N7 ? ? A DG 11 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 12 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 12 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 13 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 13 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 13 N1 ? ? ? 1_555 A DG 17 O6 ? ? A DG 16 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 13 N2 ? ? ? 1_555 A DG 17 N7 ? ? A DG 16 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DG 18 O6 ? ? A DG 17 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 18 N7 ? ? A DG 17 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 18 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 18 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 4 ? A DG 7 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 5 ? A DG 8 ? 1_555 90.6 ? 2 O6 ? A DG 4 ? A DG 7 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 8 ? A DG 11 ? 1_555 77.9 ? 3 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 8 ? A DG 11 ? 1_555 93.9 ? 4 O6 ? A DG 4 ? A DG 7 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 9 ? A DG 12 ? 1_555 142.5 ? 5 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 9 ? A DG 12 ? 1_555 64.9 ? 6 O6 ? A DG 8 ? A DG 11 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 9 ? A DG 12 ? 1_555 76.1 ? 7 O6 ? A DG 4 ? A DG 7 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 13 ? A DG 16 ? 1_555 105.6 ? 8 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 13 ? A DG 16 ? 1_555 152.3 ? 9 O6 ? A DG 8 ? A DG 11 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 13 ? A DG 16 ? 1_555 68.5 ? 10 O6 ? A DG 9 ? A DG 12 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 13 ? A DG 16 ? 1_555 89.4 ? 11 O6 ? A DG 4 ? A DG 7 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 14 ? A DG 17 ? 1_555 146.5 ? 12 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 14 ? A DG 17 ? 1_555 101.3 ? 13 O6 ? A DG 8 ? A DG 11 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 14 ? A DG 17 ? 1_555 131.4 ? 14 O6 ? A DG 9 ? A DG 12 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 14 ? A DG 17 ? 1_555 69.7 ? 15 O6 ? A DG 13 ? A DG 16 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 14 ? A DG 17 ? 1_555 77.6 ? 16 O6 ? A DG 4 ? A DG 7 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 17 ? A DG 20 ? 1_555 65.6 ? 17 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 17 ? A DG 20 ? 1_555 130.0 ? 18 O6 ? A DG 8 ? A DG 11 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 17 ? A DG 20 ? 1_555 120.4 ? 19 O6 ? A DG 9 ? A DG 12 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 17 ? A DG 20 ? 1_555 151.9 ? 20 O6 ? A DG 13 ? A DG 16 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 17 ? A DG 20 ? 1_555 77.7 ? 21 O6 ? A DG 14 ? A DG 17 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 17 ? A DG 20 ? 1_555 83.1 ? 22 O6 ? A DG 4 ? A DG 7 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 91.2 ? 23 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 70.4 ? 24 O6 ? A DG 8 ? A DG 11 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 161.0 ? 25 O6 ? A DG 9 ? A DG 12 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 105.2 ? 26 O6 ? A DG 13 ? A DG 16 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 130.0 ? 27 O6 ? A DG 14 ? A DG 17 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 64.4 ? 28 O6 ? A DG 17 ? A DG 20 ? 1_555 K ? B K . ? A K 26 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 67.1 ? 29 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 6 ? A DG 9 ? 1_555 72.2 ? 30 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 9 ? A DG 12 ? 1_555 54.8 ? 31 O6 ? A DG 6 ? A DG 9 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 9 ? A DG 12 ? 1_555 91.1 ? 32 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 10 ? A DG 13 ? 1_555 119.6 ? 33 O6 ? A DG 6 ? A DG 9 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 10 ? A DG 13 ? 1_555 83.4 ? 34 O6 ? A DG 9 ? A DG 12 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 10 ? A DG 13 ? 1_555 72.0 ? 35 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 14 ? A DG 17 ? 1_555 93.7 ? 36 O6 ? A DG 6 ? A DG 9 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 14 ? A DG 17 ? 1_555 153.9 ? 37 O6 ? A DG 9 ? A DG 12 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 14 ? A DG 17 ? 1_555 63.1 ? 38 O6 ? A DG 10 ? A DG 13 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 14 ? A DG 17 ? 1_555 85.0 ? 39 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 15 ? A DG 18 ? 1_555 161.8 ? 40 O6 ? A DG 6 ? A DG 9 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 15 ? A DG 18 ? 1_555 119.6 ? 41 O6 ? A DG 9 ? A DG 12 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 15 ? A DG 18 ? 1_555 133.1 ? 42 O6 ? A DG 10 ? A DG 13 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 15 ? A DG 18 ? 1_555 77.1 ? 43 O6 ? A DG 14 ? A DG 17 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 15 ? A DG 18 ? 1_555 80.1 ? 44 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 66.3 ? 45 O6 ? A DG 6 ? A DG 9 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 122.8 ? 46 O6 ? A DG 9 ? A DG 12 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 95.3 ? 47 O6 ? A DG 10 ? A DG 13 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 151.8 ? 48 O6 ? A DG 14 ? A DG 17 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 66.9 ? 49 O6 ? A DG 15 ? A DG 18 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 95.7 ? 50 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 19 ? A DG 22 ? 1_555 93.1 ? 51 O6 ? A DG 6 ? A DG 9 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 19 ? A DG 22 ? 1_555 73.3 ? 52 O6 ? A DG 9 ? A DG 12 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 19 ? A DG 22 ? 1_555 147.6 ? 53 O6 ? A DG 10 ? A DG 13 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 19 ? A DG 22 ? 1_555 131.6 ? 54 O6 ? A DG 14 ? A DG 17 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 19 ? A DG 22 ? 1_555 130.6 ? 55 O6 ? A DG 15 ? A DG 18 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 19 ? A DG 22 ? 1_555 78.6 ? 56 O6 ? A DG 18 ? A DG 21 ? 1_555 K ? C K . ? A K 27 ? 1_555 O6 ? A DG 19 ? A DG 22 ? 1_555 71.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 26 ? 8 'BINDING SITE FOR RESIDUE K A 26' AC2 Software A K 27 ? 8 'BINDING SITE FOR RESIDUE K A 27' AC3 Software A QUL 1 ? 3 'BINDING SITE FOR RESIDUE QUL A 1' AC4 Software A QUL 2 ? 6 'BINDING SITE FOR RESIDUE QUL A 2' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DG A 4 ? DG A 7 . ? 1_555 ? 2 AC1 8 DG A 5 ? DG A 8 . ? 1_555 ? 3 AC1 8 DG A 8 ? DG A 11 . ? 1_555 ? 4 AC1 8 DG A 9 ? DG A 12 . ? 1_555 ? 5 AC1 8 DG A 13 ? DG A 16 . ? 1_555 ? 6 AC1 8 DG A 14 ? DG A 17 . ? 1_555 ? 7 AC1 8 DG A 17 ? DG A 20 . ? 1_555 ? 8 AC1 8 DG A 18 ? DG A 21 . ? 1_555 ? 9 AC2 8 DG A 5 ? DG A 8 . ? 1_555 ? 10 AC2 8 DG A 6 ? DG A 9 . ? 1_555 ? 11 AC2 8 DG A 9 ? DG A 12 . ? 1_555 ? 12 AC2 8 DG A 10 ? DG A 13 . ? 1_555 ? 13 AC2 8 DG A 14 ? DG A 17 . ? 1_555 ? 14 AC2 8 DG A 15 ? DG A 18 . ? 1_555 ? 15 AC2 8 DG A 18 ? DG A 21 . ? 1_555 ? 16 AC2 8 DG A 19 ? DG A 22 . ? 1_555 ? 17 AC3 3 DG A 2 ? DG A 5 . ? 1_555 ? 18 AC3 3 DG A 8 ? DG A 11 . ? 1_555 ? 19 AC3 3 DG A 13 ? DG A 16 . ? 1_555 ? 20 AC4 6 DG A 6 ? DG A 9 . ? 1_555 ? 21 AC4 6 DG A 10 ? DG A 13 . ? 1_555 ? 22 AC4 6 DG A 15 ? DG A 18 . ? 1_555 ? 23 AC4 6 DT A 20 ? DT A 23 . ? 1_555 ? 24 AC4 6 DA A 21 ? DA A 24 . ? 1_555 ? 25 AC4 6 DA A 22 ? DA A 25 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DA 15 ? ? "C4'" A DA 15 ? ? 1.570 1.512 0.058 0.007 N 2 2 "C5'" A DA 15 ? ? "C4'" A DA 15 ? ? 1.563 1.512 0.051 0.007 N 3 3 "C5'" A DA 15 ? ? "C4'" A DA 15 ? ? 1.563 1.512 0.051 0.007 N 4 4 "C5'" A DA 15 ? ? "C4'" A DA 15 ? ? 1.567 1.512 0.055 0.007 N 5 4 "C5'" A DG 18 ? ? "C4'" A DG 18 ? ? 1.554 1.512 0.042 0.007 N 6 6 "C5'" A DA 15 ? ? "C4'" A DA 15 ? ? 1.568 1.512 0.056 0.007 N 7 7 "C5'" A DA 15 ? ? "C4'" A DA 15 ? ? 1.560 1.512 0.048 0.007 N 8 8 "C5'" A DA 15 ? ? "C4'" A DA 15 ? ? 1.558 1.512 0.046 0.007 N 9 9 "C5'" A DA 15 ? ? "C4'" A DA 15 ? ? 1.566 1.512 0.054 0.007 N 10 9 "C5'" A DG 18 ? ? "C4'" A DG 18 ? ? 1.555 1.512 0.043 0.007 N 11 10 "C5'" A DA 15 ? ? "C4'" A DA 15 ? ? 1.568 1.512 0.056 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DG 9 ? ? "O3'" A DG 9 ? ? P A DT 10 ? ? 127.64 119.70 7.94 1.20 Y 2 1 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 111.76 108.30 3.46 0.30 N 3 1 "C3'" A DA 15 ? ? "O3'" A DA 15 ? ? P A DG 16 ? ? 128.60 119.70 8.90 1.20 Y 4 2 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.99 108.30 2.69 0.30 N 5 2 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.20 108.30 1.90 0.30 N 6 2 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 111.92 108.30 3.62 0.30 N 7 2 "C3'" A DA 15 ? ? "O3'" A DA 15 ? ? P A DG 16 ? ? 130.82 119.70 11.12 1.20 Y 8 2 "C3'" A DG 21 ? ? "O3'" A DG 21 ? ? P A DG 22 ? ? 127.34 119.70 7.64 1.20 Y 9 3 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.19 108.30 1.89 0.30 N 10 3 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 111.35 108.30 3.05 0.30 N 11 3 "C3'" A DA 15 ? ? "O3'" A DA 15 ? ? P A DG 16 ? ? 130.60 119.70 10.90 1.20 Y 12 4 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.06 108.30 2.76 0.30 N 13 4 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.22 108.30 1.92 0.30 N 14 4 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 111.19 108.30 2.89 0.30 N 15 4 "C3'" A DA 15 ? ? "O3'" A DA 15 ? ? P A DG 16 ? ? 130.11 119.70 10.41 1.20 Y 16 5 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.54 108.30 2.24 0.30 N 17 5 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 111.26 108.30 2.96 0.30 N 18 5 "C3'" A DA 15 ? ? "O3'" A DA 15 ? ? P A DG 16 ? ? 131.99 119.70 12.29 1.20 Y 19 6 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.34 108.30 2.04 0.30 N 20 6 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.71 108.30 2.41 0.30 N 21 6 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 112.06 108.30 3.76 0.30 N 22 6 "C3'" A DA 15 ? ? "O3'" A DA 15 ? ? P A DG 16 ? ? 130.54 119.70 10.84 1.20 Y 23 7 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.28 108.30 1.98 0.30 N 24 7 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 111.29 108.30 2.99 0.30 N 25 7 "C3'" A DA 15 ? ? "O3'" A DA 15 ? ? P A DG 16 ? ? 130.49 119.70 10.79 1.20 Y 26 7 N3 A DG 17 ? ? C4 A DG 17 ? ? N9 A DG 17 ? ? 122.33 126.00 -3.67 0.60 N 27 7 C6 A DG 17 ? ? C5 A DG 17 ? ? N7 A DG 17 ? ? 134.03 130.40 3.63 0.60 N 28 8 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 112.32 108.30 4.02 0.30 N 29 8 "C3'" A DA 15 ? ? "O3'" A DA 15 ? ? P A DG 16 ? ? 129.73 119.70 10.03 1.20 Y 30 9 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.39 108.30 2.09 0.30 N 31 9 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 111.41 108.30 3.11 0.30 N 32 9 "C3'" A DA 15 ? ? "O3'" A DA 15 ? ? P A DG 16 ? ? 132.90 119.70 13.20 1.20 Y 33 10 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 111.26 108.30 2.96 0.30 N 34 10 "C3'" A DA 15 ? ? "O3'" A DA 15 ? ? P A DG 16 ? ? 131.04 119.70 11.34 1.20 Y 35 10 N3 A DG 17 ? ? C4 A DG 17 ? ? N9 A DG 17 ? ? 122.30 126.00 -3.70 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 5 ? ? 0.142 'SIDE CHAIN' 2 1 DG A 7 ? ? 0.064 'SIDE CHAIN' 3 1 DG A 9 ? ? 0.072 'SIDE CHAIN' 4 1 DT A 10 ? ? 0.082 'SIDE CHAIN' 5 1 DG A 13 ? ? 0.089 'SIDE CHAIN' 6 1 DG A 17 ? ? 0.057 'SIDE CHAIN' 7 1 DG A 18 ? ? 0.099 'SIDE CHAIN' 8 1 DG A 20 ? ? 0.066 'SIDE CHAIN' 9 1 DG A 21 ? ? 0.060 'SIDE CHAIN' 10 1 DT A 23 ? ? 0.129 'SIDE CHAIN' 11 2 DT A 4 ? ? 0.075 'SIDE CHAIN' 12 2 DG A 5 ? ? 0.142 'SIDE CHAIN' 13 2 DG A 9 ? ? 0.120 'SIDE CHAIN' 14 2 DG A 13 ? ? 0.077 'SIDE CHAIN' 15 2 DT A 14 ? ? 0.085 'SIDE CHAIN' 16 2 DG A 18 ? ? 0.068 'SIDE CHAIN' 17 2 DG A 20 ? ? 0.086 'SIDE CHAIN' 18 2 DG A 21 ? ? 0.078 'SIDE CHAIN' 19 3 DG A 5 ? ? 0.124 'SIDE CHAIN' 20 3 DG A 9 ? ? 0.123 'SIDE CHAIN' 21 3 DG A 13 ? ? 0.083 'SIDE CHAIN' 22 3 DG A 17 ? ? 0.056 'SIDE CHAIN' 23 3 DG A 18 ? ? 0.108 'SIDE CHAIN' 24 3 DG A 20 ? ? 0.110 'SIDE CHAIN' 25 3 DT A 23 ? ? 0.090 'SIDE CHAIN' 26 4 DG A 5 ? ? 0.065 'SIDE CHAIN' 27 4 DG A 9 ? ? 0.104 'SIDE CHAIN' 28 4 DG A 12 ? ? 0.075 'SIDE CHAIN' 29 4 DG A 13 ? ? 0.097 'SIDE CHAIN' 30 4 DT A 14 ? ? 0.080 'SIDE CHAIN' 31 4 DG A 18 ? ? 0.117 'SIDE CHAIN' 32 4 DG A 20 ? ? 0.076 'SIDE CHAIN' 33 4 DG A 21 ? ? 0.054 'SIDE CHAIN' 34 4 DT A 23 ? ? 0.098 'SIDE CHAIN' 35 5 DG A 5 ? ? 0.162 'SIDE CHAIN' 36 5 DG A 9 ? ? 0.113 'SIDE CHAIN' 37 5 DG A 12 ? ? 0.093 'SIDE CHAIN' 38 5 DG A 13 ? ? 0.075 'SIDE CHAIN' 39 5 DG A 18 ? ? 0.088 'SIDE CHAIN' 40 5 DG A 20 ? ? 0.100 'SIDE CHAIN' 41 5 DT A 23 ? ? 0.161 'SIDE CHAIN' 42 5 DA A 24 ? ? 0.057 'SIDE CHAIN' 43 6 DT A 4 ? ? 0.065 'SIDE CHAIN' 44 6 DG A 5 ? ? 0.156 'SIDE CHAIN' 45 6 DG A 7 ? ? 0.070 'SIDE CHAIN' 46 6 DG A 9 ? ? 0.084 'SIDE CHAIN' 47 6 DG A 13 ? ? 0.075 'SIDE CHAIN' 48 6 DT A 14 ? ? 0.058 'SIDE CHAIN' 49 6 DG A 18 ? ? 0.105 'SIDE CHAIN' 50 6 DT A 19 ? ? 0.082 'SIDE CHAIN' 51 6 DG A 20 ? ? 0.073 'SIDE CHAIN' 52 6 DG A 21 ? ? 0.058 'SIDE CHAIN' 53 6 DT A 23 ? ? 0.102 'SIDE CHAIN' 54 7 DG A 5 ? ? 0.116 'SIDE CHAIN' 55 7 DG A 9 ? ? 0.119 'SIDE CHAIN' 56 7 DT A 10 ? ? 0.078 'SIDE CHAIN' 57 7 DG A 13 ? ? 0.073 'SIDE CHAIN' 58 7 DA A 15 ? ? 0.061 'SIDE CHAIN' 59 7 DG A 17 ? ? 0.056 'SIDE CHAIN' 60 7 DG A 18 ? ? 0.068 'SIDE CHAIN' 61 7 DG A 20 ? ? 0.100 'SIDE CHAIN' 62 8 DG A 5 ? ? 0.153 'SIDE CHAIN' 63 8 DA A 6 ? ? 0.065 'SIDE CHAIN' 64 8 DG A 7 ? ? 0.059 'SIDE CHAIN' 65 8 DG A 12 ? ? 0.074 'SIDE CHAIN' 66 8 DG A 13 ? ? 0.061 'SIDE CHAIN' 67 8 DG A 18 ? ? 0.101 'SIDE CHAIN' 68 8 DG A 20 ? ? 0.107 'SIDE CHAIN' 69 8 DG A 21 ? ? 0.072 'SIDE CHAIN' 70 8 DT A 23 ? ? 0.102 'SIDE CHAIN' 71 9 DG A 5 ? ? 0.088 'SIDE CHAIN' 72 9 DG A 9 ? ? 0.104 'SIDE CHAIN' 73 9 DT A 10 ? ? 0.106 'SIDE CHAIN' 74 9 DG A 12 ? ? 0.072 'SIDE CHAIN' 75 9 DG A 13 ? ? 0.079 'SIDE CHAIN' 76 9 DG A 18 ? ? 0.143 'SIDE CHAIN' 77 9 DG A 21 ? ? 0.062 'SIDE CHAIN' 78 9 DA A 25 ? ? 0.063 'SIDE CHAIN' 79 10 DG A 5 ? ? 0.125 'SIDE CHAIN' 80 10 DG A 9 ? ? 0.124 'SIDE CHAIN' 81 10 DG A 13 ? ? 0.074 'SIDE CHAIN' 82 10 DG A 18 ? ? 0.112 'SIDE CHAIN' 83 10 DG A 20 ? ? 0.062 'SIDE CHAIN' 84 10 DG A 21 ? ? 0.058 'SIDE CHAIN' 85 10 DT A 23 ? ? 0.077 'SIDE CHAIN' 86 10 DA A 24 ? ? 0.052 'SIDE CHAIN' # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'OUTSIDE BINDER' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2L7V _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2L7V _pdbx_nmr_representative.selection_criteria 'fewest violations' # _pdbx_nmr_sample_details.contents ;1 mM DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3'), 2 mM quindoline, 10 mM potassium phosphate, 0.1 mM DSS, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id ;DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3')-1 ; 1 ? mM ? 1 quindoline-2 2 ? mM ? 1 'potassium phosphate-3' 10 ? mM ? 1 DSS-4 0.1 ? mM ? 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.01 _pdbx_nmr_exptl_sample_conditions.pH 6 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 35 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 1 '2D 1H-1H COSY' 1 3 1 '2D 1H-1H TOCSY' # _pdbx_nmr_refine.entry_id 2L7V _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_software.authors 'Accelrys Software Inc.' _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name 'Insight II' _pdbx_nmr_software.version 2003 _pdbx_nmr_software.ordinal 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DG OP3 O N N 37 DG P P N N 38 DG OP1 O N N 39 DG OP2 O N N 40 DG "O5'" O N N 41 DG "C5'" C N N 42 DG "C4'" C N R 43 DG "O4'" O N N 44 DG "C3'" C N S 45 DG "O3'" O N N 46 DG "C2'" C N N 47 DG "C1'" C N R 48 DG N9 N Y N 49 DG C8 C Y N 50 DG N7 N Y N 51 DG C5 C Y N 52 DG C6 C N N 53 DG O6 O N N 54 DG N1 N N N 55 DG C2 C N N 56 DG N2 N N N 57 DG N3 N N N 58 DG C4 C Y N 59 DG HOP3 H N N 60 DG HOP2 H N N 61 DG "H5'" H N N 62 DG "H5''" H N N 63 DG "H4'" H N N 64 DG "H3'" H N N 65 DG "HO3'" H N N 66 DG "H2'" H N N 67 DG "H2''" H N N 68 DG "H1'" H N N 69 DG H8 H N N 70 DG H1 H N N 71 DG H21 H N N 72 DG H22 H N N 73 DT OP3 O N N 74 DT P P N N 75 DT OP1 O N N 76 DT OP2 O N N 77 DT "O5'" O N N 78 DT "C5'" C N N 79 DT "C4'" C N R 80 DT "O4'" O N N 81 DT "C3'" C N S 82 DT "O3'" O N N 83 DT "C2'" C N N 84 DT "C1'" C N R 85 DT N1 N N N 86 DT C2 C N N 87 DT O2 O N N 88 DT N3 N N N 89 DT C4 C N N 90 DT O4 O N N 91 DT C5 C N N 92 DT C7 C N N 93 DT C6 C N N 94 DT HOP3 H N N 95 DT HOP2 H N N 96 DT "H5'" H N N 97 DT "H5''" H N N 98 DT "H4'" H N N 99 DT "H3'" H N N 100 DT "HO3'" H N N 101 DT "H2'" H N N 102 DT "H2''" H N N 103 DT "H1'" H N N 104 DT H3 H N N 105 DT H71 H N N 106 DT H72 H N N 107 DT H73 H N N 108 DT H6 H N N 109 K K K N N 110 QUL N1 N Y N 111 QUL C2 C Y N 112 QUL C3 C Y N 113 QUL C4 C Y N 114 QUL C5 C Y N 115 QUL C6 C Y N 116 QUL N6 N N N 117 QUL N7 N Y N 118 QUL C8 C Y N 119 QUL C9 C Y N 120 QUL "C1'" C N N 121 QUL C10 C Y N 122 QUL C11 C Y N 123 QUL C1A C Y N 124 QUL C11A C Y N 125 QUL "C2'" C N N 126 QUL C2A C Y N 127 QUL "N3'" N N N 128 QUL "C4'" C N N 129 QUL C4X C N N 130 QUL "C5'" C N N 131 QUL C5A C Y N 132 QUL C5X C N N 133 QUL C6A C Y N 134 QUL C8A C Y N 135 QUL H2 H N N 136 QUL H3 H N N 137 QUL H4 H N N 138 QUL H5 H N N 139 QUL HN6 H N N 140 QUL HN7 H N N 141 QUL H8 H N N 142 QUL H9 H N N 143 QUL "H1'" H N N 144 QUL "H2'" H N N 145 QUL "H4'" H N N 146 QUL "H5'" H N N 147 QUL "H1'A" H N N 148 QUL "H2'A" H N N 149 QUL "H4'A" H N N 150 QUL "H5'A" H N N 151 QUL "H5'B" H N N 152 QUL H10 H N N 153 QUL H11 H N N 154 QUL H4X H N N 155 QUL H5X H N N 156 QUL H4XA H N N 157 QUL H5XA H N N 158 QUL H5XB H N N 159 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DG OP3 P sing N N 39 DG OP3 HOP3 sing N N 40 DG P OP1 doub N N 41 DG P OP2 sing N N 42 DG P "O5'" sing N N 43 DG OP2 HOP2 sing N N 44 DG "O5'" "C5'" sing N N 45 DG "C5'" "C4'" sing N N 46 DG "C5'" "H5'" sing N N 47 DG "C5'" "H5''" sing N N 48 DG "C4'" "O4'" sing N N 49 DG "C4'" "C3'" sing N N 50 DG "C4'" "H4'" sing N N 51 DG "O4'" "C1'" sing N N 52 DG "C3'" "O3'" sing N N 53 DG "C3'" "C2'" sing N N 54 DG "C3'" "H3'" sing N N 55 DG "O3'" "HO3'" sing N N 56 DG "C2'" "C1'" sing N N 57 DG "C2'" "H2'" sing N N 58 DG "C2'" "H2''" sing N N 59 DG "C1'" N9 sing N N 60 DG "C1'" "H1'" sing N N 61 DG N9 C8 sing Y N 62 DG N9 C4 sing Y N 63 DG C8 N7 doub Y N 64 DG C8 H8 sing N N 65 DG N7 C5 sing Y N 66 DG C5 C6 sing N N 67 DG C5 C4 doub Y N 68 DG C6 O6 doub N N 69 DG C6 N1 sing N N 70 DG N1 C2 sing N N 71 DG N1 H1 sing N N 72 DG C2 N2 sing N N 73 DG C2 N3 doub N N 74 DG N2 H21 sing N N 75 DG N2 H22 sing N N 76 DG N3 C4 sing N N 77 DT OP3 P sing N N 78 DT OP3 HOP3 sing N N 79 DT P OP1 doub N N 80 DT P OP2 sing N N 81 DT P "O5'" sing N N 82 DT OP2 HOP2 sing N N 83 DT "O5'" "C5'" sing N N 84 DT "C5'" "C4'" sing N N 85 DT "C5'" "H5'" sing N N 86 DT "C5'" "H5''" sing N N 87 DT "C4'" "O4'" sing N N 88 DT "C4'" "C3'" sing N N 89 DT "C4'" "H4'" sing N N 90 DT "O4'" "C1'" sing N N 91 DT "C3'" "O3'" sing N N 92 DT "C3'" "C2'" sing N N 93 DT "C3'" "H3'" sing N N 94 DT "O3'" "HO3'" sing N N 95 DT "C2'" "C1'" sing N N 96 DT "C2'" "H2'" sing N N 97 DT "C2'" "H2''" sing N N 98 DT "C1'" N1 sing N N 99 DT "C1'" "H1'" sing N N 100 DT N1 C2 sing N N 101 DT N1 C6 sing N N 102 DT C2 O2 doub N N 103 DT C2 N3 sing N N 104 DT N3 C4 sing N N 105 DT N3 H3 sing N N 106 DT C4 O4 doub N N 107 DT C4 C5 sing N N 108 DT C5 C7 sing N N 109 DT C5 C6 doub N N 110 DT C7 H71 sing N N 111 DT C7 H72 sing N N 112 DT C7 H73 sing N N 113 DT C6 H6 sing N N 114 QUL N1 C1A doub Y N 115 QUL N1 C2A sing Y N 116 QUL C2 C3 doub Y N 117 QUL C2 C2A sing Y N 118 QUL C2 H2 sing N N 119 QUL C3 C4 sing Y N 120 QUL C3 H3 sing N N 121 QUL C4 C5 doub Y N 122 QUL C4 H4 sing N N 123 QUL C5 C5A sing Y N 124 QUL C5 H5 sing N N 125 QUL C6 N6 sing N N 126 QUL C6 C5A sing Y N 127 QUL C6 C6A doub Y N 128 QUL N6 "C1'" sing N N 129 QUL N6 HN6 sing N N 130 QUL N7 C6A sing Y N 131 QUL N7 C8A sing Y N 132 QUL N7 HN7 sing N N 133 QUL C8 C9 doub Y N 134 QUL C8 C8A sing Y N 135 QUL C8 H8 sing N N 136 QUL C9 C10 sing Y N 137 QUL C9 H9 sing N N 138 QUL "C1'" "C2'" sing N N 139 QUL "C1'" "H1'" sing N N 140 QUL "C1'" "H1'A" sing N N 141 QUL C10 C11 doub Y N 142 QUL C10 H10 sing N N 143 QUL C11 C11A sing Y N 144 QUL C11 H11 sing N N 145 QUL C1A C11A sing Y N 146 QUL C1A C6A sing Y N 147 QUL C11A C8A doub Y N 148 QUL "C2'" "N3'" sing N N 149 QUL "C2'" "H2'" sing N N 150 QUL "C2'" "H2'A" sing N N 151 QUL C2A C5A doub Y N 152 QUL "N3'" "C4'" sing N N 153 QUL "N3'" C4X sing N N 154 QUL "C4'" "C5'" sing N N 155 QUL "C4'" "H4'" sing N N 156 QUL "C4'" "H4'A" sing N N 157 QUL C4X C5X sing N N 158 QUL C4X H4X sing N N 159 QUL C4X H4XA sing N N 160 QUL "C5'" "H5'" sing N N 161 QUL "C5'" "H5'A" sing N N 162 QUL "C5'" "H5'B" sing N N 163 QUL C5X H5X sing N N 164 QUL C5X H5XA sing N N 165 QUL C5X H5XB sing N N 166 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2L7V 'double helix' 2L7V 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 13 1_555 A DG 17 1_555 1.872 3.203 -0.080 1.008 7.458 -87.734 1 A_DG16:DG20_A A 16 ? A 20 ? 6 3 1 A DG 14 1_555 A DG 18 1_555 1.617 3.262 -0.257 -2.986 -6.006 -93.458 2 A_DG17:DG21_A A 17 ? A 21 ? 6 3 1 A DG 15 1_555 A DG 10 1_555 -1.619 -3.492 0.043 -2.666 -4.804 88.771 3 A_DG18:DG13_A A 18 ? A 13 ? 6 3 1 A DG 19 1_555 A DG 6 1_555 1.548 3.301 -0.483 -1.764 -1.312 -93.532 4 A_DG22:DG9_A A 22 ? A 9 ? 6 3 1 A DG 9 1_555 A DG 5 1_555 -1.434 -3.497 0.043 6.712 9.777 89.894 5 A_DG12:DG8_A A 12 ? A 8 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 13 1_555 A DG 17 1_555 A DG 14 1_555 A DG 18 1_555 -0.240 -0.812 3.012 7.158 0.204 31.567 -1.491 1.585 2.884 0.369 -12.950 32.349 1 AA_DG16DG17:DG21DG20_AA A 16 ? A 20 ? A 17 ? A 21 ? 1 A DG 14 1_555 A DG 18 1_555 A DG 15 1_555 A DG 10 1_555 0.461 2.422 3.140 2.738 1.098 -65.120 -2.292 0.536 3.084 -1.020 2.542 -65.179 2 AA_DG17DG18:DG13DG21_AA A 17 ? A 21 ? A 18 ? A 13 ? 1 A DG 15 1_555 A DG 10 1_555 A DG 19 1_555 A DG 6 1_555 1.868 3.317 0.138 3.064 -9.023 -178.064 -1.659 0.934 0.141 4.512 1.532 -178.071 3 AA_DG18DG22:DG9DG13_AA A 18 ? A 13 ? A 22 ? A 9 ? 1 A DG 19 1_555 A DG 6 1_555 A DG 9 1_555 A DG 5 1_555 -1.549 -1.722 -3.294 0.297 4.411 59.713 -1.500 1.538 -3.409 4.424 -0.298 59.861 4 AA_DG22DG12:DG8DG9_AA A 22 ? A 9 ? A 12 ? A 8 ? # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker DRX' # _atom_sites.entry_id 2L7V _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H K N O P # loop_