HEADER SIGNALING PROTEIN INHIBITOR 24-DEC-10 2L7W TITLE SOLUTION STRUCTURE OF THE HUMAN RAF-1 KINASE INHIBITOR PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RAF-1 KINASE INHIBITOR PROTEIN, PEBP-1, HCNPPP, COMPND 5 NEUROPOLYPEPTIDE H3, PROSTATIC-BINDING PROTEIN, RAF KINASE INHIBITOR COMPND 6 PROTEIN, RKIP, HIPPOCAMPAL CHOLINERGIC NEUROSTIMULATING PEPTIDE, COMPND 7 HCNP; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RKIP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PRECEIVER-B01A KEYWDS RAF-1 KINASE INHIBITOR PROTEIN, SIGNALING PROTEIN INHIBITOR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.Y.YI REVDAT 2 14-JUN-23 2L7W 1 REMARK REVDAT 1 25-JAN-12 2L7W 0 JRNL AUTH C.Y.YI,D.LIN JRNL TITL SOLUTION STRUCTURE OF THE HUMAN RAF-1 KINASE INHIBITOR JRNL TITL 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L7W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000102067. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 3MM [U-100% 13C; U-100% 15N] RAF REMARK 210 -1 KINASE INHIBITOR PROTEIN; 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG LEU A 58 HH TYR A 64 1.26 REMARK 500 HB2 ARG A 119 HG CYS A 168 1.28 REMARK 500 OD2 ASP A 78 HZ1 LYS A 80 1.57 REMARK 500 OD1 ASP A 4 HG SER A 6 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 19 TYR A 158 CE1 TYR A 158 CZ -0.088 REMARK 500 19 TYR A 158 CZ TYR A 158 CE2 0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 9 14.59 -144.96 REMARK 500 1 VAL A 17 -61.33 -124.88 REMARK 500 1 GLN A 20 120.48 67.05 REMARK 500 1 SER A 54 122.26 176.17 REMARK 500 1 ASP A 56 83.06 -65.64 REMARK 500 1 SER A 60 -6.12 76.76 REMARK 500 1 ASP A 72 38.87 -90.56 REMARK 500 1 ASP A 78 86.88 -165.22 REMARK 500 1 THR A 101 107.00 -58.54 REMARK 500 1 PRO A 130 24.71 -71.85 REMARK 500 1 LEU A 131 -178.76 71.99 REMARK 500 1 LYS A 132 79.16 -165.72 REMARK 500 1 SER A 139 -157.66 52.04 REMARK 500 1 SER A 142 125.29 72.66 REMARK 500 1 ARG A 161 -85.78 -60.32 REMARK 500 1 TRP A 173 85.05 -64.89 REMARK 500 1 ASP A 175 -36.21 173.43 REMARK 500 1 LEU A 184 0.24 -63.29 REMARK 500 2 PRO A 2 98.39 -63.67 REMARK 500 2 VAL A 3 113.05 65.40 REMARK 500 2 SER A 9 26.50 -150.21 REMARK 500 2 VAL A 34 63.03 -101.56 REMARK 500 2 SER A 54 128.66 175.91 REMARK 500 2 ASP A 56 84.18 -66.29 REMARK 500 2 ASP A 72 43.83 -89.32 REMARK 500 2 ASP A 78 88.90 -159.63 REMARK 500 2 THR A 101 106.88 -59.07 REMARK 500 2 PRO A 130 41.87 -64.95 REMARK 500 2 LEU A 131 167.42 74.42 REMARK 500 2 LYS A 132 71.06 -157.15 REMARK 500 2 CYS A 133 -75.83 -93.39 REMARK 500 2 ASN A 140 30.36 -81.59 REMARK 500 2 SER A 142 178.15 66.18 REMARK 500 2 HIS A 145 67.49 -113.78 REMARK 500 2 ARG A 146 -79.72 -79.71 REMARK 500 2 ARG A 161 -158.65 -147.64 REMARK 500 2 GLU A 172 -161.73 -126.74 REMARK 500 2 ASP A 175 -35.04 172.79 REMARK 500 2 LEU A 184 2.78 -68.42 REMARK 500 3 ASP A 4 31.02 -143.46 REMARK 500 3 SER A 9 20.86 -153.42 REMARK 500 3 VAL A 17 -70.23 -92.39 REMARK 500 3 GLN A 20 112.45 64.26 REMARK 500 3 VAL A 34 66.50 -116.52 REMARK 500 3 ASN A 48 -151.88 -135.50 REMARK 500 3 SER A 54 116.48 174.23 REMARK 500 3 ASP A 56 85.36 -68.63 REMARK 500 3 ASP A 72 48.82 -82.85 REMARK 500 3 ASP A 134 31.28 -90.22 REMARK 500 3 PRO A 136 106.64 -48.36 REMARK 500 REMARK 500 THIS ENTRY HAS 318 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17382 RELATED DB: BMRB DBREF 2L7W A 1 187 UNP P30086 PEBP1_HUMAN 1 187 SEQRES 1 A 187 MET PRO VAL ASP LEU SER LYS TRP SER GLY PRO LEU SER SEQRES 2 A 187 LEU GLN GLU VAL ASP GLU GLN PRO GLN HIS PRO LEU HIS SEQRES 3 A 187 VAL THR TYR ALA GLY ALA ALA VAL ASP GLU LEU GLY LYS SEQRES 4 A 187 VAL LEU THR PRO THR GLN VAL LYS ASN ARG PRO THR SER SEQRES 5 A 187 ILE SER TRP ASP GLY LEU ASP SER GLY LYS LEU TYR THR SEQRES 6 A 187 LEU VAL LEU THR ASP PRO ASP ALA PRO SER ARG LYS ASP SEQRES 7 A 187 PRO LYS TYR ARG GLU TRP HIS HIS PHE LEU VAL VAL ASN SEQRES 8 A 187 MET LYS GLY ASN ASP ILE SER SER GLY THR VAL LEU SER SEQRES 9 A 187 ASP TYR VAL GLY SER GLY PRO PRO LYS GLY THR GLY LEU SEQRES 10 A 187 HIS ARG TYR VAL TRP LEU VAL TYR GLU GLN ASP ARG PRO SEQRES 11 A 187 LEU LYS CYS ASP GLU PRO ILE LEU SER ASN ARG SER GLY SEQRES 12 A 187 ASP HIS ARG GLY LYS PHE LYS VAL ALA SER PHE ARG LYS SEQRES 13 A 187 LYS TYR GLU LEU ARG ALA PRO VAL ALA GLY THR CYS TYR SEQRES 14 A 187 GLN ALA GLU TRP ASP ASP TYR VAL PRO LYS LEU TYR GLU SEQRES 15 A 187 GLN LEU SER GLY LYS HELIX 1 1 ASP A 4 TRP A 8 5 5 HELIX 2 2 SER A 13 VAL A 17 5 5 HELIX 3 3 GLY A 143 GLY A 147 5 5 HELIX 4 4 LYS A 150 GLU A 159 1 10 HELIX 5 5 TYR A 176 LEU A 184 1 9 SHEET 1 A 3 HIS A 23 PRO A 24 0 SHEET 2 A 3 PRO A 163 ALA A 171 1 O GLY A 166 N HIS A 23 SHEET 3 A 3 LYS A 39 VAL A 40 1 N LYS A 39 O GLN A 170 SHEET 1 B 6 HIS A 23 PRO A 24 0 SHEET 2 B 6 PRO A 163 ALA A 171 1 O GLY A 166 N HIS A 23 SHEET 3 B 6 HIS A 118 GLU A 126 -1 N TRP A 122 O THR A 167 SHEET 4 B 6 LEU A 63 THR A 69 -1 N VAL A 67 O LEU A 123 SHEET 5 B 6 PHE A 87 LYS A 93 -1 O VAL A 89 N LEU A 66 SHEET 6 B 6 THR A 101 SER A 104 -1 O SER A 104 N LEU A 88 SHEET 1 C 3 ALA A 33 VAL A 34 0 SHEET 2 C 3 HIS A 26 THR A 28 -1 N VAL A 27 O VAL A 34 SHEET 3 C 3 SER A 52 SER A 54 -1 O SER A 52 N THR A 28 CISPEP 1 ALA A 73 PRO A 74 1 -0.17 CISPEP 2 ARG A 82 GLU A 83 1 2.71 CISPEP 3 ALA A 73 PRO A 74 2 2.33 CISPEP 4 ARG A 82 GLU A 83 2 -0.31 CISPEP 5 ALA A 73 PRO A 74 3 -1.46 CISPEP 6 ARG A 82 GLU A 83 3 0.17 CISPEP 7 ALA A 73 PRO A 74 4 0.77 CISPEP 8 ARG A 82 GLU A 83 4 -0.90 CISPEP 9 ALA A 73 PRO A 74 5 -0.19 CISPEP 10 ARG A 82 GLU A 83 5 -4.42 CISPEP 11 ALA A 73 PRO A 74 6 -0.02 CISPEP 12 ARG A 82 GLU A 83 6 -2.33 CISPEP 13 ALA A 73 PRO A 74 7 -0.92 CISPEP 14 ARG A 82 GLU A 83 7 2.15 CISPEP 15 ALA A 73 PRO A 74 8 -0.08 CISPEP 16 ARG A 82 GLU A 83 8 -1.42 CISPEP 17 ALA A 73 PRO A 74 9 -0.41 CISPEP 18 ARG A 82 GLU A 83 9 -3.98 CISPEP 19 ALA A 73 PRO A 74 10 2.29 CISPEP 20 ARG A 82 GLU A 83 10 -3.26 CISPEP 21 ALA A 73 PRO A 74 11 2.40 CISPEP 22 ARG A 82 GLU A 83 11 -4.73 CISPEP 23 ALA A 73 PRO A 74 12 0.99 CISPEP 24 ARG A 82 GLU A 83 12 7.38 CISPEP 25 ALA A 73 PRO A 74 13 1.52 CISPEP 26 ARG A 82 GLU A 83 13 -5.66 CISPEP 27 ALA A 73 PRO A 74 14 0.24 CISPEP 28 ARG A 82 GLU A 83 14 0.66 CISPEP 29 ALA A 73 PRO A 74 15 1.26 CISPEP 30 ARG A 82 GLU A 83 15 -3.40 CISPEP 31 ALA A 73 PRO A 74 16 1.43 CISPEP 32 ARG A 82 GLU A 83 16 -3.46 CISPEP 33 ALA A 73 PRO A 74 17 0.55 CISPEP 34 ARG A 82 GLU A 83 17 -6.13 CISPEP 35 ALA A 73 PRO A 74 18 1.48 CISPEP 36 ARG A 82 GLU A 83 18 -2.37 CISPEP 37 ALA A 73 PRO A 74 19 1.23 CISPEP 38 ARG A 82 GLU A 83 19 -0.25 CISPEP 39 ALA A 73 PRO A 74 20 1.71 CISPEP 40 ARG A 82 GLU A 83 20 -5.72 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1