HEADER    PROTEIN BINDING                         07-JAN-11   2L89              
TITLE     SOLUTION STRUCTURE OF PDP1 PWWP DOMAIN REVEALS ITS UNIQUE BINDING     
TITLE    2 SITES FOR METHYLATED H4K20 AND DNA                                   
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PWWP DOMAIN-CONTAINING PROTEIN 1;                          
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: PWWP DOMAIN, RESIDUES 45-152;                              
COMPND   5 SYNONYM: SET9-ASSOCIATED FACTOR PDP1;                                
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE;                      
SOURCE   3 ORGANISM_COMMON: FISSION YEAST;                                      
SOURCE   4 ORGANISM_TAXID: 4896;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR;                               
SOURCE   8 EXPRESSION_SYSTEM_VECTOR: PET22B                                     
KEYWDS    HISTONE BINDING, PROTEIN BINDING                                      
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    Y.QIU,J.ZHANG,W.ZHANG                                                 
REVDAT   3   15-MAY-24 2L89    1       REMARK                                   
REVDAT   2   14-JUN-23 2L89    1       SEQADV                                   
REVDAT   1   21-DEC-11 2L89    0                                                
JRNL        AUTH   Y.QIU,W.ZHANG,C.ZHAO,Y.WANG,W.WANG,J.ZHANG,Z.ZHANG,G.LI,     
JRNL        AUTH 2 Y.SHI,X.TU,J.WU                                              
JRNL        TITL   SOLUTION STRUCTURE OF PDP1 PWWP DOMAIN REVEALS ITS UNIQUE    
JRNL        TITL 2 BINDING SITES FOR METHYLATED H4K20 AND DNA                   
JRNL        REF    BIOCHEM.J.                                 2011              
JRNL        REFN                   ESSN 1470-8728                               
JRNL        PMID   22150589                                                     
JRNL        DOI    10.1042/BJ20111885                                           
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS                                                  
REMARK   3   AUTHORS     : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ         
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2L89 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JAN-11.                  
REMARK 100 THE DEPOSITION ID IS D_1000102080.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 4.8                                
REMARK 210  IONIC STRENGTH                 : 0.140                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 20MM SODIUM PHOSPHATE-1; 100MM     
REMARK 210                                   SODIUM CHLORIDE-2; 2MM EDTA-3;     
REMARK 210                                   90% H2O/10% D2O; 20MM SODIUM       
REMARK 210                                   PHOSPHATE-4; 100MM SODIUM          
REMARK 210                                   CHLORIDE-5; 2MM EDTA-6; 100% D2O   
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-15N HSQC; 3D CBCA(CO)NH;     
REMARK 210                                   3D C(CO)NH; 3D HNCO; 3D HNCA; 3D   
REMARK 210                                   HNCACB; 3D HBHA(CO)NH; 3D HN(CO)   
REMARK 210                                   CA; 3D H(CCO)NH; 3D 1H-15N NOESY;  
REMARK 210                                   3D HCCH-TOCSY; 3D HCCH-COSY; 3D    
REMARK 210                                   1H-13C NOESY; 2D 1H-1H TOCSY; 2D   
REMARK 210                                   1H-1H NOESY                        
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ                            
REMARK 210  SPECTROMETER MODEL             : DMX                                
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NULL                               
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 200                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 PRO A  61      103.84    -58.21                                   
REMARK 500  1 PRO A  64     -168.75    -65.14                                   
REMARK 500  1 SER A  79      -79.34   -165.73                                   
REMARK 500  1 LEU A  80       27.77   -153.57                                   
REMARK 500  1 ASN A  83       27.41   -145.55                                   
REMARK 500  1 SER A  84      -73.37   -123.72                                   
REMARK 500  1 PHE A  98       82.06    -57.88                                   
REMARK 500  1 ASN A  99     -169.46   -129.80                                   
REMARK 500  1 SER A 123       38.95    -93.27                                   
REMARK 500  1 LYS A 124      -53.21   -130.11                                   
REMARK 500  1 SER A 148      -75.35   -156.86                                   
REMARK 500  1 THR A 149       96.59     57.37                                   
REMARK 500  1 ASP A 150      171.17     69.17                                   
REMARK 500  2 ALA A  46      153.62     68.94                                   
REMARK 500  2 ARG A  49     -176.17   -173.75                                   
REMARK 500  2 LEU A  50       75.27     60.81                                   
REMARK 500  2 PRO A  61       98.12    -63.45                                   
REMARK 500  2 ASP A  78      -76.13    -95.09                                   
REMARK 500  2 SER A  79      -74.64   -142.52                                   
REMARK 500  2 LEU A  80      -74.78   -152.04                                   
REMARK 500  2 ASN A  81       39.14   -157.42                                   
REMARK 500  2 THR A  82       40.54   -145.21                                   
REMARK 500  2 ASN A  83      -51.01   -165.66                                   
REMARK 500  2 SER A  84      -47.12   -169.25                                   
REMARK 500  2 SER A  85      108.65     66.84                                   
REMARK 500  2 PHE A  86      104.59     66.57                                   
REMARK 500  2 PHE A  98       28.14     80.66                                   
REMARK 500  2 ASN A  99     -161.98    -78.78                                   
REMARK 500  2 ALA A 101      125.73   -172.91                                   
REMARK 500  2 SER A 122       68.14   -116.11                                   
REMARK 500  2 SER A 123       43.41    -92.27                                   
REMARK 500  2 THR A 139      106.54    -51.67                                   
REMARK 500  2 LEU A 143      -88.88     65.81                                   
REMARK 500  2 LYS A 144      -75.76     58.14                                   
REMARK 500  2 LEU A 151      -65.65   -143.38                                   
REMARK 500  3 ASP A  47       31.38   -151.10                                   
REMARK 500  3 ASP A  48       66.91   -102.35                                   
REMARK 500  3 LEU A  50       94.25     67.56                                   
REMARK 500  3 PRO A  64     -179.86    -67.82                                   
REMARK 500  3 ASP A  78       68.74     61.95                                   
REMARK 500  3 LEU A  80      -86.48   -106.49                                   
REMARK 500  3 ASN A  81       37.06   -166.17                                   
REMARK 500  3 SER A  85      131.35   -171.67                                   
REMARK 500  3 LYS A  91       98.86    -68.11                                   
REMARK 500  3 PHE A  98       76.51     75.89                                   
REMARK 500  3 ASN A  99     -157.88   -135.02                                   
REMARK 500  3 SER A 123      -33.86     80.91                                   
REMARK 500  3 THR A 139      106.76    -42.76                                   
REMARK 500  3 ASP A 142      -75.92    -64.94                                   
REMARK 500  3 GLU A 146      -69.58   -157.58                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     310 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 17398   RELATED DB: BMRB                                 
DBREF  2L89 A   45   152  UNP    O59676   PDP1_SCHPO      45    152             
SEQADV 2L89 LEU A  151  UNP  O59676    GLU   151 CLONING ARTIFACT               
SEQRES   1 A  108  SER ALA ASP ASP ARG LEU ASN PHE GLY ASP ARG ILE LEU          
SEQRES   2 A  108  VAL LYS ALA PRO GLY TYR PRO TRP TRP PRO ALA LEU LEU          
SEQRES   3 A  108  LEU ARG ARG LYS GLU THR LYS ASP SER LEU ASN THR ASN          
SEQRES   4 A  108  SER SER PHE ASN VAL LEU TYR LYS VAL LEU PHE PHE PRO          
SEQRES   5 A  108  ASP PHE ASN PHE ALA TRP VAL LYS ARG ASN SER VAL LYS          
SEQRES   6 A  108  PRO LEU LEU ASP SER GLU ILE ALA LYS PHE LEU GLY SER          
SEQRES   7 A  108  SER LYS ARG LYS SER LYS GLU LEU ILE GLU ALA TYR GLU          
SEQRES   8 A  108  ALA SER LYS THR PRO PRO ASP LEU LYS GLU GLU SER SER          
SEQRES   9 A  108  THR ASP LEU GLU                                              
HELIX    1   1 LYS A  104  ASN A  106  5                                   3    
HELIX    2   2 LEU A  112  SER A  122  1                                  11    
HELIX    3   3 SER A  127  LYS A  138  1                                  12    
HELIX    4   4 THR A  139  LEU A  143  5                                   5    
SHEET    1   A 5 ASN A  99  VAL A 103  0                                        
SHEET    2   A 5 PHE A  86  PHE A  94 -1  N  TYR A  90   O  VAL A 103           
SHEET    3   A 5 TRP A  65  LYS A  77 -1  N  LEU A  71   O  LYS A  91           
SHEET    4   A 5 ASP A  54  LYS A  59 -1  N  VAL A  58   O  TRP A  66           
SHEET    5   A 5 VAL A 108  PRO A 110 -1  O  LYS A 109   N  LEU A  57           
CISPEP   1 PHE A   95    PRO A   96          1        -0.23                     
CISPEP   2 PHE A   95    PRO A   96          2         0.28                     
CISPEP   3 PHE A   95    PRO A   96          3         0.10                     
CISPEP   4 PHE A   95    PRO A   96          4        -0.01                     
CISPEP   5 PHE A   95    PRO A   96          5         0.15                     
CISPEP   6 PHE A   95    PRO A   96          6         0.19                     
CISPEP   7 PHE A   95    PRO A   96          7        -0.28                     
CISPEP   8 PHE A   95    PRO A   96          8         0.05                     
CISPEP   9 PHE A   95    PRO A   96          9        -0.15                     
CISPEP  10 PHE A   95    PRO A   96         10         0.01                     
CISPEP  11 PHE A   95    PRO A   96         11        -0.27                     
CISPEP  12 PHE A   95    PRO A   96         12        -0.04                     
CISPEP  13 PHE A   95    PRO A   96         13        -0.03                     
CISPEP  14 PHE A   95    PRO A   96         14         0.22                     
CISPEP  15 PHE A   95    PRO A   96         15        -0.16                     
CISPEP  16 PHE A   95    PRO A   96         16        -0.12                     
CISPEP  17 PHE A   95    PRO A   96         17         0.03                     
CISPEP  18 PHE A   95    PRO A   96         18         0.06                     
CISPEP  19 PHE A   95    PRO A   96         19        -0.18                     
CISPEP  20 PHE A   95    PRO A   96         20        -0.30                     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1