HEADER HYDROLASE 22-JAN-11 2L8R TITLE SOLUTION STRUCTURE OF HUMAN PROTEIN C6ORF130 IN COMPLEX WITH ADP- TITLE 2 RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN C6ORF130; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C6ORF130; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SG13009[PREP4]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PQE30 KEYWDS MACRO DOMAIN, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 2 2, CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, DEACYLASE, KEYWDS 3 HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.L.LYTLE,F.C.PETERSON,B.F.VOLKMAN,CENTER FOR EUKARYOTIC STRUCTURAL AUTHOR 2 GENOMICS (CESG) REVDAT 4 01-MAY-24 2L8R 1 REMARK SEQADV REVDAT 3 26-OCT-11 2L8R 1 JRNL REVDAT 2 17-AUG-11 2L8R 1 HEADER KEYWDS REMARK VERSN REVDAT 1 23-FEB-11 2L8R 0 JRNL AUTH F.C.PETERSON,D.CHEN,B.L.LYTLE,M.N.ROSSI,I.AHEL,J.M.DENU, JRNL AUTH 2 B.F.VOLKMAN JRNL TITL ORPHAN MACRODOMAIN PROTEIN (HUMAN C6ORF130) IS AN JRNL TITL 2 O-ACYL-ADP-RIBOSE DEACYLASE: SOLUTION STRUCTURE AND JRNL TITL 3 CATALYTIC PROPERTIES. JRNL REF J.BIOL.CHEM. V. 286 35955 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21849506 JRNL DOI 10.1074/JBC.M111.276238 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.9.3, CYANA REMARK 3 AUTHORS : REMARK 3 SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M. (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON A TOTAL OF 2020 REMARK 3 NOE CONSTRAINTS (632 INTRA, 416 SEQUENTIAL, 303 MEDIUM, 630 LONG REMARK 3 RANGE, AND 39 INTERMOLECULAR CONSTRAINTS) AND 211 PHI AND PSI REMARK 3 DIHEDRAL ANGLE CONSTRAINTS., STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 2020 NOE CONSTRAINTS (632 INTRA, 416 SEQUENTIAL, 303 MEDIUM, 630 REMARK 3 LONG RANGE, AND 39 INTERMOLECULAR CONSTRAINTS) AND 211 PHI AND REMARK 3 PSI DIHEDRAL ANGLE CONSTRAINTS. REMARK 4 REMARK 4 2L8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000102098. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.75 MM [U-100% 13C; U-100% 15N] REMARK 210 C6ORF130, 93% H2O, 7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY (AROMATIC); 3D REMARK 210 F1-13C-FLITERED/F3-13C-EDITED 1H- REMARK 210 13C NOESY ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, NMRPIPE 2007, XEASY REMARK 210 1.3, GARANT 2.1, CYANA 2.1 REMARK 210 METHOD USED : AUTOMATED METHODS WERE USED FOR REMARK 210 BACKBONE CHEMICAL SHIFT REMARK 210 ASSIGNMENT AND ITERATIVE NOE REMARK 210 REFINEMENT. FINAL STRUCTURES REMARK 210 WERE OBTAINED BY MOLECULAR REMARK 210 DYNAMICS IN EXPLICIT SOLVENT., REMARK 210 TORSION ANGLE DYNAMICS, REMARK 210 AUTOMATED METHODS WERE USED FOR REMARK 210 BACKBONE CHEMICAL SHIFT REMARK 210 ASSIGNMENT AND ITERATIVE NOE REMARK 210 REFINEMENT. FINAL STRUCTURES REMARK 210 WERE OBTAINED BY MOLECULAR REMARK 210 DYNAMICS IN EXPLICIT SOLVENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 38 82.75 56.85 REMARK 500 1 GLN A 62 82.74 65.14 REMARK 500 1 THR A 83 -87.33 -83.30 REMARK 500 1 CYS A 122 4.50 -152.21 REMARK 500 1 ALA A 142 71.13 -117.58 REMARK 500 2 GLU A 7 93.98 80.22 REMARK 500 2 SER A 12 159.72 72.56 REMARK 500 2 CYS A 24 115.71 -33.46 REMARK 500 2 PRO A 25 -177.08 -62.40 REMARK 500 2 GLN A 62 77.64 54.33 REMARK 500 2 THR A 83 -81.58 -71.66 REMARK 500 3 GLN A 62 91.29 61.68 REMARK 500 3 THR A 83 -88.80 -82.06 REMARK 500 3 ARG A 126 15.77 85.92 REMARK 500 4 GLN A 62 74.82 54.85 REMARK 500 4 THR A 83 -79.60 -88.57 REMARK 500 4 CYS A 122 10.39 -169.87 REMARK 500 5 ASP A 8 83.10 -161.94 REMARK 500 5 ARG A 13 -73.99 -65.07 REMARK 500 5 CYS A 24 94.29 41.67 REMARK 500 5 CYS A 38 83.03 64.23 REMARK 500 5 GLN A 62 66.84 63.31 REMARK 500 5 THR A 83 -83.89 -83.35 REMARK 500 5 CYS A 122 -30.72 -157.88 REMARK 500 6 ALA A 42 12.29 -155.76 REMARK 500 6 GLN A 62 74.04 56.31 REMARK 500 6 THR A 83 -83.27 -76.59 REMARK 500 6 CYS A 122 6.06 -173.35 REMARK 500 7 GLU A 7 -65.62 -96.72 REMARK 500 7 ASP A 8 113.87 56.18 REMARK 500 7 CYS A 24 96.96 70.91 REMARK 500 7 GLN A 62 86.35 63.69 REMARK 500 7 THR A 83 -76.54 -77.03 REMARK 500 7 CYS A 122 -43.39 -152.25 REMARK 500 8 SER A 12 -161.54 -177.93 REMARK 500 8 PRO A 25 132.72 -15.19 REMARK 500 8 CYS A 38 76.19 66.29 REMARK 500 8 GLN A 62 -81.07 71.36 REMARK 500 8 LYS A 63 139.60 60.16 REMARK 500 8 THR A 83 -79.37 -85.19 REMARK 500 8 CYS A 122 -0.10 -145.67 REMARK 500 9 GLU A 10 -74.34 -86.63 REMARK 500 9 SER A 12 170.69 65.95 REMARK 500 9 PRO A 25 153.38 -47.36 REMARK 500 9 CYS A 38 82.98 66.24 REMARK 500 9 ALA A 42 -90.53 -138.01 REMARK 500 9 GLN A 62 88.34 61.06 REMARK 500 9 THR A 83 -76.70 -88.61 REMARK 500 9 CYS A 122 -13.34 -163.96 REMARK 500 10 SER A 4 14.33 -157.90 REMARK 500 REMARK 500 THIS ENTRY HAS 107 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 13 0.07 SIDE CHAIN REMARK 500 4 ARG A 39 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APR A 186 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JYC RELATED DB: PDB REMARK 900 UNBOUND C6ORF130 REMARK 900 RELATED ID: 15593 RELATED DB: BMRB REMARK 900 UNBOUND C6ORF130 REMARK 900 RELATED ID: 17421 RELATED DB: BMRB REMARK 900 RELATED ID: GO.36728 RELATED DB: TARGETDB REMARK 900 RELATED ID: 2LGR RELATED DB: PDB DBREF 2L8R A 3 152 UNP Q9Y530 CF130_HUMAN 3 152 SEQADV 2L8R GLY A 2 UNP Q9Y530 EXPRESSION TAG SEQRES 1 A 151 GLY SER SER LEU ASN GLU ASP PRO GLU GLY SER ARG ILE SEQRES 2 A 151 THR TYR VAL LYS GLY ASP LEU PHE ALA CYS PRO LYS THR SEQRES 3 A 151 ASP SER LEU ALA HIS CYS ILE SER GLU ASP CYS ARG MET SEQRES 4 A 151 GLY ALA GLY ILE ALA VAL LEU PHE LYS LYS LYS PHE GLY SEQRES 5 A 151 GLY VAL GLN GLU LEU LEU ASN GLN GLN LYS LYS SER GLY SEQRES 6 A 151 GLU VAL ALA VAL LEU LYS ARG ASP GLY ARG TYR ILE TYR SEQRES 7 A 151 TYR LEU ILE THR LYS LYS ARG ALA SER HIS LYS PRO THR SEQRES 8 A 151 TYR GLU ASN LEU GLN LYS SER LEU GLU ALA MET LYS SER SEQRES 9 A 151 HIS CYS LEU LYS ASN GLY VAL THR ASP LEU SER MET PRO SEQRES 10 A 151 ARG ILE GLY CYS GLY LEU ASP ARG LEU GLN TRP GLU ASN SEQRES 11 A 151 VAL SER ALA MET ILE GLU GLU VAL PHE GLU ALA THR ASP SEQRES 12 A 151 ILE LYS ILE THR VAL TYR THR LEU HET APR A 186 59 HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 2 APR C15 H23 N5 O14 P2 HELIX 1 1 ASP A 20 CYS A 24 5 5 HELIX 2 2 ILE A 44 GLY A 53 1 10 HELIX 3 3 GLY A 53 GLN A 62 1 10 HELIX 4 4 THR A 92 GLY A 111 1 20 HELIX 5 5 GLN A 128 PHE A 140 1 13 SHEET 1 A 6 ILE A 14 LYS A 18 0 SHEET 2 A 6 LYS A 146 THR A 151 1 O VAL A 149 N THR A 15 SHEET 3 A 6 ASP A 114 MET A 117 1 N LEU A 115 O LYS A 146 SHEET 4 A 6 SER A 29 ILE A 34 1 N SER A 29 O SER A 116 SHEET 5 A 6 ARG A 76 ILE A 82 1 O TYR A 79 N LEU A 30 SHEET 6 A 6 VAL A 68 ARG A 73 -1 N ALA A 69 O TYR A 80 SITE 1 AC1 18 ASP A 20 LEU A 21 PHE A 22 CYS A 33 SITE 2 AC1 18 ILE A 34 SER A 35 ARG A 39 ILE A 44 SITE 3 AC1 18 LEU A 47 THR A 83 PRO A 91 PRO A 118 SITE 4 AC1 18 ARG A 119 ILE A 120 GLY A 123 LEU A 124 SITE 5 AC1 18 ASP A 125 LEU A 152 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1