HEADER PROTEIN BINDING 02-FEB-11 2L97 TITLE SOLUTION STRUCTURE OF HTRA PDZ DOMAIN FROM STREPTOCOCCUS PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SERINE PROTEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN, UNP RESIDUES 266-390; COMPND 5 SYNONYM: HTRA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET22B KEYWDS HTRA-PDZ, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.FAN,J.ZHANG,X.ZHANG,X.TU REVDAT 3 15-MAY-24 2L97 1 REMARK REVDAT 2 14-JUN-23 2L97 1 SEQADV REVDAT 1 18-JAN-12 2L97 0 JRNL AUTH K.FAN,J.ZHANG,X.ZHANG,X.TU JRNL TITL SOLUTION STRUCTURE OF HTRA PDZ DOMAIN FROM STREPTOCOCCUS JRNL TITL 2 PNEUMONIAE AND ITS INTERACTION WITH YYF-COOH CONTAINING JRNL TITL 3 PEPTIDES. JRNL REF J.STRUCT.BIOL. V. 176 16 2011 JRNL REFN ISSN 1047-8477 JRNL PMID 21757011 JRNL DOI 10.1016/J.JSB.2011.06.009 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.FAN,J.ZHANG,Q.SHANG,X.TU REMARK 1 TITL 1H, 13C AND 15N RESONANCE ASSIGNMENT OF THE PDZ DOMAIN OF REMARK 1 TITL 2 HTRA FROM STREPTOCOCCUS PNEUMONIAE REMARK 1 REF BIOMOL.NMR ASSIGN. V. 4 79 2010 REMARK 1 REFN ISSN 1874-2718 REMARK 1 PMID 20437142 REMARK 1 DOI 10.1007/S12104-010-9211-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CYANA REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L97 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000102114. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM [U-99% 13C; U-99% 15N] REMARK 210 HTRA-PDZ; 100MM SODIUM CHLORIDE; REMARK 210 25MM SODIUM PHOSPHATE; 2MM DTT; REMARK 210 1.5MM EDTA; 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 C(CO)NH; 3D HBHA(CO)NH; 3D H(CCO) REMARK 210 NH; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D HCCH- REMARK 210 COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLU A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 HIS A 134 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 173.55 60.51 REMARK 500 1 PHE A 6 -54.54 -143.53 REMARK 500 1 PRO A 9 -179.38 -69.74 REMARK 500 1 ILE A 14 84.79 56.72 REMARK 500 1 LEU A 20 -170.14 54.75 REMARK 500 1 GLU A 21 34.21 -175.33 REMARK 500 1 VAL A 26 -72.57 -67.26 REMARK 500 1 LEU A 31 26.94 -164.07 REMARK 500 1 SER A 39 46.24 -179.45 REMARK 500 1 VAL A 41 80.94 54.60 REMARK 500 1 LEU A 49 -75.56 -78.01 REMARK 500 1 ASN A 50 -77.49 177.97 REMARK 500 1 ILE A 51 64.25 -162.57 REMARK 500 1 PRO A 52 -169.23 -69.80 REMARK 500 1 SER A 53 -44.69 179.11 REMARK 500 1 VAL A 55 -68.34 -97.21 REMARK 500 1 THR A 56 99.61 64.71 REMARK 500 1 SER A 57 -179.21 63.89 REMARK 500 1 ARG A 62 18.48 -142.63 REMARK 500 1 SER A 63 89.59 -172.64 REMARK 500 1 SER A 66 19.39 55.62 REMARK 500 1 ASN A 67 40.30 39.74 REMARK 500 1 ASP A 78 82.95 44.58 REMARK 500 1 ALA A 89 -40.65 -156.63 REMARK 500 1 SER A 102 85.78 63.61 REMARK 500 2 PRO A 9 -171.54 -69.75 REMARK 500 2 ILE A 14 84.62 58.33 REMARK 500 2 LEU A 20 103.55 63.17 REMARK 500 2 GLU A 21 -57.07 -162.39 REMARK 500 2 LYS A 22 171.69 60.55 REMARK 500 2 VAL A 26 -72.60 -62.83 REMARK 500 2 LEU A 31 24.40 -147.44 REMARK 500 2 SER A 39 48.94 -177.97 REMARK 500 2 ASN A 50 -80.27 178.50 REMARK 500 2 ILE A 51 66.40 -170.52 REMARK 500 2 PRO A 52 -168.30 -69.69 REMARK 500 2 SER A 53 -45.86 -179.58 REMARK 500 2 THR A 56 83.09 64.70 REMARK 500 2 SER A 57 -175.86 63.57 REMARK 500 2 ASN A 67 59.99 38.77 REMARK 500 2 HIS A 73 91.54 -179.40 REMARK 500 2 ASP A 78 86.26 48.76 REMARK 500 2 ALA A 89 -39.89 -161.26 REMARK 500 2 SER A 102 90.19 63.58 REMARK 500 3 PRO A 9 -171.72 -69.74 REMARK 500 3 ASN A 11 55.95 -110.56 REMARK 500 3 ILE A 14 -40.99 -153.47 REMARK 500 3 GLU A 18 53.60 -172.78 REMARK 500 3 LEU A 20 -175.20 55.59 REMARK 500 3 GLU A 21 78.84 -166.20 REMARK 500 REMARK 500 THIS ENTRY HAS 493 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16653 RELATED DB: BMRB DBREF 2L97 A 2 126 UNP O06670 O06670_STRPN 266 390 SEQADV 2L97 MET A 1 UNP O06670 INITIATING METHIONINE SEQADV 2L97 LEU A 127 UNP O06670 EXPRESSION TAG SEQADV 2L97 GLU A 128 UNP O06670 EXPRESSION TAG SEQADV 2L97 HIS A 129 UNP O06670 EXPRESSION TAG SEQADV 2L97 HIS A 130 UNP O06670 EXPRESSION TAG SEQADV 2L97 HIS A 131 UNP O06670 EXPRESSION TAG SEQADV 2L97 HIS A 132 UNP O06670 EXPRESSION TAG SEQADV 2L97 HIS A 133 UNP O06670 EXPRESSION TAG SEQADV 2L97 HIS A 134 UNP O06670 EXPRESSION TAG SEQRES 1 A 134 MET GLU GLY LEU GLY PHE ALA ILE PRO ALA ASN ASP ALA SEQRES 2 A 134 ILE ASN ILE ILE GLU GLN LEU GLU LYS ASN GLY LYS VAL SEQRES 3 A 134 THR ARG PRO ALA LEU GLY ILE GLN MET VAL ASN LEU SER SEQRES 4 A 134 ASN VAL SER THR SER ASP ILE ARG ARG LEU ASN ILE PRO SEQRES 5 A 134 SER ASN VAL THR SER GLY VAL ILE VAL ARG SER VAL GLN SEQRES 6 A 134 SER ASN MET PRO ALA ASN GLY HIS LEU GLU LYS TYR ASP SEQRES 7 A 134 VAL ILE THR LYS VAL ASP ASP LYS GLU ILE ALA SER SER SEQRES 8 A 134 THR ASP LEU GLN SER ALA LEU TYR ASN HIS SER ILE GLY SEQRES 9 A 134 ASP THR ILE LYS ILE THR TYR TYR ARG ASN GLY LYS GLU SEQRES 10 A 134 GLU THR THR SER ILE LYS LEU ASN LYS LEU GLU HIS HIS SEQRES 11 A 134 HIS HIS HIS HIS HELIX 1 1 SER A 42 ASN A 50 1 9 HELIX 2 2 MET A 68 GLY A 72 5 5 HELIX 3 3 SER A 90 HIS A 101 1 12 SHEET 1 A 4 GLN A 34 ASN A 37 0 SHEET 2 A 4 VAL A 59 SER A 63 -1 O ARG A 62 N GLN A 34 SHEET 3 A 4 VAL A 79 VAL A 83 -1 O ILE A 80 N VAL A 59 SHEET 4 A 4 LYS A 86 GLU A 87 -1 O LYS A 86 N VAL A 83 SHEET 1 B 5 GLN A 34 ASN A 37 0 SHEET 2 B 5 VAL A 59 SER A 63 -1 O ARG A 62 N GLN A 34 SHEET 3 B 5 VAL A 79 VAL A 83 -1 O ILE A 80 N VAL A 59 SHEET 4 B 5 THR A 106 ARG A 113 -1 O THR A 110 N THR A 81 SHEET 5 B 5 LYS A 116 LYS A 123 -1 O ILE A 122 N ILE A 107 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1