data_2L9E # _entry.id 2L9E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2L9E pdb_00002l9e 10.2210/pdb2l9e/pdb RCSB RCSB102121 ? ? BMRB 17449 ? 10.13018/BMR17449 WWPDB D_1000102121 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_nmr_software 5 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2L9E _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-02-08 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_id 17449 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vendeix, F.A.P.' 1 'Murphy IV, F.V.' 2 'Cantara, W.' 3 'Leszczynska, G.' 4 'Gustilo, E.M.' 5 'Sproat, B.' 6 'Malkiewicz, A.A.P.' 7 'Agris, P.F.' 8 # _citation.id primary _citation.title 'Solution Structure of the human Anti-codon Stem and loop(hASL) of transfer RNA Lysine 3 (tRNALys3)' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vendeix, F.A.P.' 1 ? primary 'Murphy IV, F.V.' 2 ? primary 'Cantara, W.' 3 ? primary 'Leszczynska, G.' 4 ? primary 'Gustilo, E.M.' 5 ? primary 'Sproat, B.' 6 ? primary 'Malkiewicz, A.A.P.' 7 ? primary 'Agris, P.F.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3') ; _entity.formula_weight 5644.539 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GCAGACU(70U)UU(12A)AUCUGC' _entity_poly.pdbx_seq_one_letter_code_can GCAGACUUUUAAUCUGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 A n 1 4 G n 1 5 A n 1 6 C n 1 7 U n 1 8 70U n 1 9 U n 1 10 U n 1 11 12A n 1 12 A n 1 13 U n 1 14 C n 1 15 U n 1 16 G n 1 17 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 12A 'RNA linking' n "2-METHYLTHIO-N6-(AMINOCARBONYL-L-THREONYL)-ADENOSINE-5'-MONOPHOSPHATE" ? 'C16 H23 N6 O11 P S' 538.426 70U 'RNA linking' n "5-(O-METHYLACETO)-2-THIO-2-DEOXY-URIDINE-5'-MONOPHOSPHATE" ? 'C12 H17 N2 O10 P S' 412.310 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 27 27 G G A . n A 1 2 C 2 28 28 C C A . n A 1 3 A 3 29 29 A A A . n A 1 4 G 4 30 30 G G A . n A 1 5 A 5 31 31 A A A . n A 1 6 C 6 32 32 C C A . n A 1 7 U 7 33 33 U U A . n A 1 8 70U 8 34 34 70U 70U A . n A 1 9 U 9 35 35 U U A . n A 1 10 U 10 36 36 U U A . n A 1 11 12A 11 37 37 12A 12A A . n A 1 12 A 12 38 38 A A A . n A 1 13 U 13 39 39 U U A . n A 1 14 C 14 40 40 C C A . n A 1 15 U 15 41 41 U U A . n A 1 16 G 16 42 42 G G A . n A 1 17 C 17 43 43 C C A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2L9E _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2L9E _struct.title 'Solution Structure of the human Anti-codon Stem and loop(hASL) of transfer RNA Lysine 3 (tRNALys3)' _struct.pdbx_model_details 'minimized average, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 2L9E _struct_keywords.pdbx_keywords RNA _struct_keywords.text RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2L9E _struct_ref.pdbx_db_accession 2L9E _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2L9E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 17 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2L9E _struct_ref_seq.db_align_beg 27 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 43 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 27 _struct_ref_seq.pdbx_auth_seq_align_end 43 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A U 7 "O3'" ? ? ? 1_555 A 70U 8 P ? ? A U 33 A 70U 34 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale2 covale both ? A 70U 8 "O3'" ? ? ? 1_555 A U 9 P ? ? A 70U 34 A U 35 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale3 covale both ? A U 10 "O3'" ? ? ? 1_555 A 12A 11 P ? ? A U 36 A 12A 37 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale4 covale both ? A 12A 11 "O3'" ? ? ? 1_555 A A 12 P ? ? A 12A 37 A A 38 1_555 ? ? ? ? ? ? ? 1.605 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 16 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 16 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 16 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 15 N3 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 15 O4 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 14 N3 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 14 O2 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 14 N4 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 13 N3 ? ? A A 31 A U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 13 O4 ? ? A A 31 A U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 O2 ? ? ? 1_555 A A 12 N6 ? ? A C 32 A A 38 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 H61 A A 31 ? ? O4 A U 39 ? ? 1.43 2 2 O2 A C 28 ? ? H22 A G 42 ? ? 1.46 3 2 H22 A G 27 ? ? O2 A C 43 ? ? 1.48 4 2 N1 A A 29 ? ? H3 A U 41 ? ? 1.53 5 2 H61 A A 29 ? ? O4 A U 41 ? ? 1.56 6 3 O2 A C 28 ? ? H22 A G 42 ? ? 1.40 7 3 H22 A G 30 ? ? O2 A C 40 ? ? 1.46 8 3 H22 A G 27 ? ? O2 A C 43 ? ? 1.47 9 3 H61 A A 31 ? ? O4 A U 39 ? ? 1.52 10 3 N1 A A 29 ? ? H3 A U 41 ? ? 1.59 11 4 H61 A A 31 ? ? O4 A U 39 ? ? 1.46 12 4 H22 A G 30 ? ? O2 A C 40 ? ? 1.55 13 5 H61 A A 31 ? ? O4 A U 39 ? ? 1.41 14 5 N1 A A 31 ? ? H3 A U 39 ? ? 1.55 15 5 H22 A G 30 ? ? O2 A C 40 ? ? 1.55 16 6 H61 A A 31 ? ? O4 A U 39 ? ? 1.42 17 6 N1 A A 31 ? ? H3 A U 39 ? ? 1.54 18 7 H22 A G 30 ? ? O2 A C 40 ? ? 1.41 19 7 O2 A C 28 ? ? H22 A G 42 ? ? 1.48 20 7 H61 A A 31 ? ? O4 A U 39 ? ? 1.54 21 7 N1 A A 31 ? ? H3 A U 39 ? ? 1.56 22 8 O2 A C 28 ? ? H22 A G 42 ? ? 1.39 23 8 H22 A G 27 ? ? O2 A C 43 ? ? 1.47 24 8 H22 A G 30 ? ? O2 A C 40 ? ? 1.48 25 8 H61 A A 31 ? ? O4 A U 39 ? ? 1.52 26 8 N1 A A 29 ? ? H3 A U 41 ? ? 1.58 27 9 H22 A G 27 ? ? O2 A C 43 ? ? 1.50 28 9 O2 A C 28 ? ? H22 A G 42 ? ? 1.52 29 9 H61 A A 29 ? ? O4 A U 41 ? ? 1.54 30 9 H61 A A 31 ? ? O4 A U 39 ? ? 1.58 31 10 O2 A C 28 ? ? H22 A G 42 ? ? 1.40 32 10 H22 A G 27 ? ? O2 A C 43 ? ? 1.42 33 10 H22 A G 30 ? ? O2 A C 40 ? ? 1.45 34 10 N1 A A 29 ? ? H3 A U 41 ? ? 1.60 35 11 O2 A C 28 ? ? H22 A G 42 ? ? 1.43 36 11 H22 A G 27 ? ? O2 A C 43 ? ? 1.48 37 11 H22 A G 30 ? ? O2 A C 40 ? ? 1.49 38 11 N1 A A 29 ? ? H3 A U 41 ? ? 1.53 39 11 H61 A A 31 ? ? O4 A U 39 ? ? 1.55 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 70U 8 A 70U 34 ? U ? 2 A 12A 11 A 12A 37 ? A ? # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 80 _pdbx_nmr_ensemble.conformers_submitted_total_number 11 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2L9E _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2L9E _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;1.50 mM RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3'), 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;1.50 mM RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3'), 100% D2O ; 2 '100% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id ;RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3')-1 ; 1.50 ? mM ? 1 ;RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3')-2 ; 1.50 ? mM ? 2 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 unknown 6.2 ambient ? 275 K 2 unknown 6.2 ambient ? 295 K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 2 2 1 '2D 1H-1H TOCSY' 2 3 2 '2D 1H-1H COSY' 2 4 2 '2D DQF-COSY' 2 5 2 '2D 1H-1H NOESY' 2 6 2 '2D 1H-1H TOCSY' 2 7 2 '2D 1H-13C HSQC' 2 8 2 '2D 1H-31P HETCOR' 2 9 1 '2D 1H-1H NOESY' # _pdbx_nmr_refine.entry_id 2L9E _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection XwinNMR ? 1 'Bruker Biospin' processing XwinNMR ? 2 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 3 Goddard 'data analysis' Sparky ? 4 Goddard 'chemical shift assignment' Sparky ? 5 Goddard 'peak picking' Sparky ? 6 'Brunger, Adams, Clore, Gros, Nilges and Read' 'geometry optimization' CNS ? 7 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS ? 8 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS ? 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 12A OP3 O N N 1 12A P P N N 2 12A OP1 O N N 3 12A OP2 O N N 4 12A "O5'" O N N 5 12A "C5'" C N N 6 12A "C4'" C N R 7 12A "O4'" O N N 8 12A "C3'" C N S 9 12A "O3'" O N N 10 12A "C2'" C N R 11 12A "O2'" O N N 12 12A "C1'" C N R 13 12A N9 N Y N 14 12A C8 C Y N 15 12A N7 N Y N 16 12A C5 C Y N 17 12A C6 C Y N 18 12A N6 N N N 19 12A N1 N Y N 20 12A C2 C Y N 21 12A N3 N Y N 22 12A C4 C Y N 23 12A S2 S N N 24 12A C2M C N N 25 12A CC C N N 26 12A OO O N N 27 12A N N N N 28 12A CA C N S 29 12A C C N N 30 12A O O N N 31 12A OXT O N N 32 12A CB C N R 33 12A OG1 O N N 34 12A CG2 C N N 35 12A HOP3 H N N 36 12A HOP2 H N N 37 12A "H5'" H N N 38 12A "H5''" H N N 39 12A "H4'" H N N 40 12A "H3'" H N N 41 12A "HO3'" H N N 42 12A "H2'" H N N 43 12A "HO2'" H N N 44 12A "H1'" H N N 45 12A H8 H N N 46 12A HN6 H N N 47 12A H2M1 H N N 48 12A H2M2 H N N 49 12A H2M3 H N N 50 12A H H N N 51 12A HA H N N 52 12A HXT H N N 53 12A HB H N N 54 12A HG1 H N N 55 12A HG21 H N N 56 12A HG22 H N N 57 12A HG23 H N N 58 70U N1 N N N 59 70U C2 C N N 60 70U S2 S N N 61 70U N3 N N N 62 70U C4 C N N 63 70U O4 O N N 64 70U C5 C N N 65 70U C6 C N N 66 70U C5M C N N 67 70U C8 C N N 68 70U O8 O N N 69 70U O9 O N N 70 70U C9 C N N 71 70U "C1'" C N R 72 70U "O2'" O N N 73 70U "C2'" C N R 74 70U "O3'" O N N 75 70U "C3'" C N S 76 70U "C4'" C N R 77 70U "O4'" O N N 78 70U "C5'" C N N 79 70U "O5'" O N N 80 70U P P N N 81 70U OP1 O N N 82 70U OP2 O N N 83 70U OP3 O N N 84 70U HN3 H N N 85 70U H6 H N N 86 70U H71 H N N 87 70U H72 H N N 88 70U H91 H N N 89 70U H92 H N N 90 70U H93 H N N 91 70U "H1'" H N N 92 70U "HO2'" H N N 93 70U "H2'" H N N 94 70U "HO3'" H N N 95 70U "H3'" H N N 96 70U "H4'" H N N 97 70U "H5'" H N N 98 70U "H5''" H N N 99 70U HOP2 H N N 100 70U HOP3 H N N 101 A OP3 O N N 102 A P P N N 103 A OP1 O N N 104 A OP2 O N N 105 A "O5'" O N N 106 A "C5'" C N N 107 A "C4'" C N R 108 A "O4'" O N N 109 A "C3'" C N S 110 A "O3'" O N N 111 A "C2'" C N R 112 A "O2'" O N N 113 A "C1'" C N R 114 A N9 N Y N 115 A C8 C Y N 116 A N7 N Y N 117 A C5 C Y N 118 A C6 C Y N 119 A N6 N N N 120 A N1 N Y N 121 A C2 C Y N 122 A N3 N Y N 123 A C4 C Y N 124 A HOP3 H N N 125 A HOP2 H N N 126 A "H5'" H N N 127 A "H5''" H N N 128 A "H4'" H N N 129 A "H3'" H N N 130 A "HO3'" H N N 131 A "H2'" H N N 132 A "HO2'" H N N 133 A "H1'" H N N 134 A H8 H N N 135 A H61 H N N 136 A H62 H N N 137 A H2 H N N 138 C OP3 O N N 139 C P P N N 140 C OP1 O N N 141 C OP2 O N N 142 C "O5'" O N N 143 C "C5'" C N N 144 C "C4'" C N R 145 C "O4'" O N N 146 C "C3'" C N S 147 C "O3'" O N N 148 C "C2'" C N R 149 C "O2'" O N N 150 C "C1'" C N R 151 C N1 N N N 152 C C2 C N N 153 C O2 O N N 154 C N3 N N N 155 C C4 C N N 156 C N4 N N N 157 C C5 C N N 158 C C6 C N N 159 C HOP3 H N N 160 C HOP2 H N N 161 C "H5'" H N N 162 C "H5''" H N N 163 C "H4'" H N N 164 C "H3'" H N N 165 C "HO3'" H N N 166 C "H2'" H N N 167 C "HO2'" H N N 168 C "H1'" H N N 169 C H41 H N N 170 C H42 H N N 171 C H5 H N N 172 C H6 H N N 173 G OP3 O N N 174 G P P N N 175 G OP1 O N N 176 G OP2 O N N 177 G "O5'" O N N 178 G "C5'" C N N 179 G "C4'" C N R 180 G "O4'" O N N 181 G "C3'" C N S 182 G "O3'" O N N 183 G "C2'" C N R 184 G "O2'" O N N 185 G "C1'" C N R 186 G N9 N Y N 187 G C8 C Y N 188 G N7 N Y N 189 G C5 C Y N 190 G C6 C N N 191 G O6 O N N 192 G N1 N N N 193 G C2 C N N 194 G N2 N N N 195 G N3 N N N 196 G C4 C Y N 197 G HOP3 H N N 198 G HOP2 H N N 199 G "H5'" H N N 200 G "H5''" H N N 201 G "H4'" H N N 202 G "H3'" H N N 203 G "HO3'" H N N 204 G "H2'" H N N 205 G "HO2'" H N N 206 G "H1'" H N N 207 G H8 H N N 208 G H1 H N N 209 G H21 H N N 210 G H22 H N N 211 U OP3 O N N 212 U P P N N 213 U OP1 O N N 214 U OP2 O N N 215 U "O5'" O N N 216 U "C5'" C N N 217 U "C4'" C N R 218 U "O4'" O N N 219 U "C3'" C N S 220 U "O3'" O N N 221 U "C2'" C N R 222 U "O2'" O N N 223 U "C1'" C N R 224 U N1 N N N 225 U C2 C N N 226 U O2 O N N 227 U N3 N N N 228 U C4 C N N 229 U O4 O N N 230 U C5 C N N 231 U C6 C N N 232 U HOP3 H N N 233 U HOP2 H N N 234 U "H5'" H N N 235 U "H5''" H N N 236 U "H4'" H N N 237 U "H3'" H N N 238 U "HO3'" H N N 239 U "H2'" H N N 240 U "HO2'" H N N 241 U "H1'" H N N 242 U H3 H N N 243 U H5 H N N 244 U H6 H N N 245 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 12A OP3 P sing N N 1 12A OP3 HOP3 sing N N 2 12A P OP1 doub N N 3 12A P OP2 sing N N 4 12A P "O5'" sing N N 5 12A OP2 HOP2 sing N N 6 12A "O5'" "C5'" sing N N 7 12A "C5'" "C4'" sing N N 8 12A "C5'" "H5'" sing N N 9 12A "C5'" "H5''" sing N N 10 12A "C4'" "O4'" sing N N 11 12A "C4'" "C3'" sing N N 12 12A "C4'" "H4'" sing N N 13 12A "O4'" "C1'" sing N N 14 12A "C3'" "O3'" sing N N 15 12A "C3'" "C2'" sing N N 16 12A "C3'" "H3'" sing N N 17 12A "O3'" "HO3'" sing N N 18 12A "C2'" "O2'" sing N N 19 12A "C2'" "C1'" sing N N 20 12A "C2'" "H2'" sing N N 21 12A "O2'" "HO2'" sing N N 22 12A "C1'" N9 sing N N 23 12A "C1'" "H1'" sing N N 24 12A N9 C8 sing Y N 25 12A N9 C4 sing Y N 26 12A C8 N7 doub Y N 27 12A C8 H8 sing N N 28 12A N7 C5 sing Y N 29 12A C5 C6 sing Y N 30 12A C5 C4 doub Y N 31 12A C6 N6 sing N N 32 12A C6 N1 doub Y N 33 12A N6 CC sing N N 34 12A N6 HN6 sing N N 35 12A N1 C2 sing Y N 36 12A C2 N3 doub Y N 37 12A C2 S2 sing N N 38 12A N3 C4 sing Y N 39 12A S2 C2M sing N N 40 12A C2M H2M1 sing N N 41 12A C2M H2M2 sing N N 42 12A C2M H2M3 sing N N 43 12A CC OO doub N N 44 12A CC N sing N N 45 12A N CA sing N N 46 12A N H sing N N 47 12A CA C sing N N 48 12A CA CB sing N N 49 12A CA HA sing N N 50 12A C O doub N N 51 12A C OXT sing N N 52 12A OXT HXT sing N N 53 12A CB OG1 sing N N 54 12A CB CG2 sing N N 55 12A CB HB sing N N 56 12A OG1 HG1 sing N N 57 12A CG2 HG21 sing N N 58 12A CG2 HG22 sing N N 59 12A CG2 HG23 sing N N 60 70U N1 C2 sing N N 61 70U N1 C6 sing N N 62 70U N1 "C1'" sing N N 63 70U C2 S2 doub N N 64 70U C2 N3 sing N N 65 70U N3 C4 sing N N 66 70U N3 HN3 sing N N 67 70U C4 O4 doub N N 68 70U C4 C5 sing N N 69 70U C5 C6 doub N N 70 70U C5 C5M sing N N 71 70U C6 H6 sing N N 72 70U C5M C8 sing N N 73 70U C5M H71 sing N N 74 70U C5M H72 sing N N 75 70U C8 O8 doub N N 76 70U C8 O9 sing N N 77 70U O9 C9 sing N N 78 70U C9 H91 sing N N 79 70U C9 H92 sing N N 80 70U C9 H93 sing N N 81 70U "C1'" "C2'" sing N N 82 70U "C1'" "O4'" sing N N 83 70U "C1'" "H1'" sing N N 84 70U "O2'" "C2'" sing N N 85 70U "O2'" "HO2'" sing N N 86 70U "C2'" "C3'" sing N N 87 70U "C2'" "H2'" sing N N 88 70U "O3'" "C3'" sing N N 89 70U "O3'" "HO3'" sing N N 90 70U "C3'" "C4'" sing N N 91 70U "C3'" "H3'" sing N N 92 70U "C4'" "O4'" sing N N 93 70U "C4'" "C5'" sing N N 94 70U "C4'" "H4'" sing N N 95 70U "C5'" "O5'" sing N N 96 70U "C5'" "H5'" sing N N 97 70U "C5'" "H5''" sing N N 98 70U "O5'" P sing N N 99 70U P OP1 doub N N 100 70U P OP2 sing N N 101 70U P OP3 sing N N 102 70U OP2 HOP2 sing N N 103 70U OP3 HOP3 sing N N 104 A OP3 P sing N N 105 A OP3 HOP3 sing N N 106 A P OP1 doub N N 107 A P OP2 sing N N 108 A P "O5'" sing N N 109 A OP2 HOP2 sing N N 110 A "O5'" "C5'" sing N N 111 A "C5'" "C4'" sing N N 112 A "C5'" "H5'" sing N N 113 A "C5'" "H5''" sing N N 114 A "C4'" "O4'" sing N N 115 A "C4'" "C3'" sing N N 116 A "C4'" "H4'" sing N N 117 A "O4'" "C1'" sing N N 118 A "C3'" "O3'" sing N N 119 A "C3'" "C2'" sing N N 120 A "C3'" "H3'" sing N N 121 A "O3'" "HO3'" sing N N 122 A "C2'" "O2'" sing N N 123 A "C2'" "C1'" sing N N 124 A "C2'" "H2'" sing N N 125 A "O2'" "HO2'" sing N N 126 A "C1'" N9 sing N N 127 A "C1'" "H1'" sing N N 128 A N9 C8 sing Y N 129 A N9 C4 sing Y N 130 A C8 N7 doub Y N 131 A C8 H8 sing N N 132 A N7 C5 sing Y N 133 A C5 C6 sing Y N 134 A C5 C4 doub Y N 135 A C6 N6 sing N N 136 A C6 N1 doub Y N 137 A N6 H61 sing N N 138 A N6 H62 sing N N 139 A N1 C2 sing Y N 140 A C2 N3 doub Y N 141 A C2 H2 sing N N 142 A N3 C4 sing Y N 143 C OP3 P sing N N 144 C OP3 HOP3 sing N N 145 C P OP1 doub N N 146 C P OP2 sing N N 147 C P "O5'" sing N N 148 C OP2 HOP2 sing N N 149 C "O5'" "C5'" sing N N 150 C "C5'" "C4'" sing N N 151 C "C5'" "H5'" sing N N 152 C "C5'" "H5''" sing N N 153 C "C4'" "O4'" sing N N 154 C "C4'" "C3'" sing N N 155 C "C4'" "H4'" sing N N 156 C "O4'" "C1'" sing N N 157 C "C3'" "O3'" sing N N 158 C "C3'" "C2'" sing N N 159 C "C3'" "H3'" sing N N 160 C "O3'" "HO3'" sing N N 161 C "C2'" "O2'" sing N N 162 C "C2'" "C1'" sing N N 163 C "C2'" "H2'" sing N N 164 C "O2'" "HO2'" sing N N 165 C "C1'" N1 sing N N 166 C "C1'" "H1'" sing N N 167 C N1 C2 sing N N 168 C N1 C6 sing N N 169 C C2 O2 doub N N 170 C C2 N3 sing N N 171 C N3 C4 doub N N 172 C C4 N4 sing N N 173 C C4 C5 sing N N 174 C N4 H41 sing N N 175 C N4 H42 sing N N 176 C C5 C6 doub N N 177 C C5 H5 sing N N 178 C C6 H6 sing N N 179 G OP3 P sing N N 180 G OP3 HOP3 sing N N 181 G P OP1 doub N N 182 G P OP2 sing N N 183 G P "O5'" sing N N 184 G OP2 HOP2 sing N N 185 G "O5'" "C5'" sing N N 186 G "C5'" "C4'" sing N N 187 G "C5'" "H5'" sing N N 188 G "C5'" "H5''" sing N N 189 G "C4'" "O4'" sing N N 190 G "C4'" "C3'" sing N N 191 G "C4'" "H4'" sing N N 192 G "O4'" "C1'" sing N N 193 G "C3'" "O3'" sing N N 194 G "C3'" "C2'" sing N N 195 G "C3'" "H3'" sing N N 196 G "O3'" "HO3'" sing N N 197 G "C2'" "O2'" sing N N 198 G "C2'" "C1'" sing N N 199 G "C2'" "H2'" sing N N 200 G "O2'" "HO2'" sing N N 201 G "C1'" N9 sing N N 202 G "C1'" "H1'" sing N N 203 G N9 C8 sing Y N 204 G N9 C4 sing Y N 205 G C8 N7 doub Y N 206 G C8 H8 sing N N 207 G N7 C5 sing Y N 208 G C5 C6 sing N N 209 G C5 C4 doub Y N 210 G C6 O6 doub N N 211 G C6 N1 sing N N 212 G N1 C2 sing N N 213 G N1 H1 sing N N 214 G C2 N2 sing N N 215 G C2 N3 doub N N 216 G N2 H21 sing N N 217 G N2 H22 sing N N 218 G N3 C4 sing N N 219 U OP3 P sing N N 220 U OP3 HOP3 sing N N 221 U P OP1 doub N N 222 U P OP2 sing N N 223 U P "O5'" sing N N 224 U OP2 HOP2 sing N N 225 U "O5'" "C5'" sing N N 226 U "C5'" "C4'" sing N N 227 U "C5'" "H5'" sing N N 228 U "C5'" "H5''" sing N N 229 U "C4'" "O4'" sing N N 230 U "C4'" "C3'" sing N N 231 U "C4'" "H4'" sing N N 232 U "O4'" "C1'" sing N N 233 U "C3'" "O3'" sing N N 234 U "C3'" "C2'" sing N N 235 U "C3'" "H3'" sing N N 236 U "O3'" "HO3'" sing N N 237 U "C2'" "O2'" sing N N 238 U "C2'" "C1'" sing N N 239 U "C2'" "H2'" sing N N 240 U "O2'" "HO2'" sing N N 241 U "C1'" N1 sing N N 242 U "C1'" "H1'" sing N N 243 U N1 C2 sing N N 244 U N1 C6 sing N N 245 U C2 O2 doub N N 246 U C2 N3 sing N N 247 U N3 C4 sing N N 248 U N3 H3 sing N N 249 U C4 O4 doub N N 250 U C4 C5 sing N N 251 U C5 C6 doub N N 252 U C5 H5 sing N N 253 U C6 H6 sing N N 254 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2L9E 'a-form double helix' 2L9E 'hairpin loop' 2L9E 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 17 1_555 -0.435 -0.030 -0.032 2.207 2.901 -0.023 1 A_G27:C43_A A 27 ? A 43 ? 19 1 1 A C 2 1_555 A G 16 1_555 -0.251 -0.085 0.020 1.416 2.099 2.078 2 A_C28:G42_A A 28 ? A 42 ? 19 1 1 A A 3 1_555 A U 15 1_555 0.211 -0.095 -0.066 -0.165 2.273 -0.636 3 A_A29:U41_A A 29 ? A 41 ? 20 1 1 A G 4 1_555 A C 14 1_555 -0.313 -0.133 0.000 -2.457 -0.354 -0.919 4 A_G30:C40_A A 30 ? A 40 ? 19 1 1 A A 5 1_555 A U 13 1_555 0.202 0.354 0.028 -2.405 -0.984 -2.421 5 A_A31:U39_A A 31 ? A 39 ? 20 1 1 A C 6 1_555 A A 12 1_555 3.512 -0.379 -0.627 -9.688 8.377 -17.358 6 A_C32:A38_A A 32 ? A 38 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 17 1_555 A C 2 1_555 A G 16 1_555 0.011 -1.730 3.178 -1.488 10.293 33.975 -4.192 -0.214 2.559 17.124 2.476 35.487 1 AA_G27C28:G42C43_AA A 27 ? A 43 ? A 28 ? A 42 ? 1 A C 2 1_555 A G 16 1_555 A A 3 1_555 A U 15 1_555 -0.201 -1.662 3.392 0.162 5.430 32.691 -3.826 0.379 3.082 9.565 -0.286 33.127 2 AA_C28A29:U41G42_AA A 28 ? A 42 ? A 29 ? A 41 ? 1 A A 3 1_555 A U 15 1_555 A G 4 1_555 A C 14 1_555 0.044 -1.788 3.324 0.379 7.483 30.007 -4.735 -0.012 2.807 14.177 -0.717 30.907 3 AA_A29G30:C40U41_AA A 29 ? A 41 ? A 30 ? A 40 ? 1 A G 4 1_555 A C 14 1_555 A A 5 1_555 A U 13 1_555 -0.114 -1.590 3.306 0.979 4.783 34.959 -3.316 0.329 3.064 7.915 -1.619 35.288 4 AA_G30A31:U39C40_AA A 30 ? A 40 ? A 31 ? A 39 ? 1 A A 5 1_555 A U 13 1_555 A C 6 1_555 A A 12 1_555 -0.720 -2.227 3.591 3.893 7.593 42.576 -3.774 1.364 3.094 10.332 -5.298 43.384 5 AA_A31C32:A38U39_AA A 31 ? A 39 ? A 32 ? A 38 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 500 Bruker DRX 1 'Bruker DRX' 600 Varian UNITY 2 'Varian Unity' # _atom_sites.entry_id 2L9E _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_