HEADER APOPTOSIS 21-FEB-11 2L9L TITLE NMR STRUCTURE OF THE MOUSE MFG-E8 C2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTADHERIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2 DOMAIN; COMPND 5 SYNONYM: MFGM, MILK FAT GLOBULE-EGF FACTOR 8, MFG-E8, SED1, SPERM COMPND 6 SURFACE PROTEIN SP47, MP47; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MFGE8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET29B KEYWDS APOPTOSIS, PHOSPHATIDYLSERINE-BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.YE,H.S.YOON REVDAT 3 14-JUN-23 2L9L 1 REMARK SEQADV REVDAT 2 20-FEB-13 2L9L 1 ATOM JRNL REVDAT 1 29-AUG-12 2L9L 0 JRNL AUTH H.YE,B.LI,V.SUBRAMANIAN,B.H.CHOI,Y.LIANG,A.HARIKISHORE, JRNL AUTH 2 G.CHAKRABORTY,K.BAEK,H.S.YOON JRNL TITL NMR SOLUTION STRUCTURE OF C2 DOMAIN OF MFG-E8 AND INSIGHTS JRNL TITL 2 INTO ITS MOLECULAR RECOGNITION WITH PHOSPHATIDYLSERINE JRNL REF BIOCHIM.BIOPHYS.ACTA V.1828 1083 2013 JRNL REFN ISSN 0006-3002 JRNL PMID 23262193 JRNL DOI 10.1016/J.BBAMEM.2012.12.009 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L9L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000102128. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.02 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM SODIUM PHOSPHATE-1, 20 MM REMARK 210 SODIUM CHLORIDE-2, 0.01 % SODIUM REMARK 210 AZIDE-3, 0.8 MM [U-13C; U-15N] REMARK 210 MFG-E8 C2 DOMAIN-4, 90% H2O/10% REMARK 210 D2O; 20 MM SODIUM PHOSPHATE-5, REMARK 210 20 MM SODIUM CHLORIDE-6, 0.01 % REMARK 210 SODIUM AZIDE-7, 0.8 MM [U-13C; U- REMARK 210 15N] MFG-E8 C2 DOMAIN-8, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D H(CC)(CO) REMARK 210 NH; 3D (H)CC(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, NMRVIEW, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 159 REMARK 465 HIS A 160 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 4 -167.52 -69.73 REMARK 500 1 LYS A 8 -75.20 -140.88 REMARK 500 1 PRO A 13 -165.06 -69.70 REMARK 500 1 SER A 18 128.92 179.79 REMARK 500 1 THR A 25 -47.31 178.27 REMARK 500 1 TRP A 26 -166.39 178.87 REMARK 500 1 ASN A 27 -74.36 -100.23 REMARK 500 1 LEU A 28 -168.70 50.80 REMARK 500 1 ALA A 30 -169.17 64.10 REMARK 500 1 PHE A 31 -75.08 -58.41 REMARK 500 1 PRO A 35 -165.62 -69.75 REMARK 500 1 LYS A 45 -31.70 -178.22 REMARK 500 1 ALA A 48 142.38 -178.53 REMARK 500 1 SER A 55 -169.85 -125.90 REMARK 500 1 GLN A 67 81.56 51.38 REMARK 500 1 ASP A 80 70.32 -111.08 REMARK 500 1 TYR A 86 145.16 179.91 REMARK 500 1 ALA A 88 -76.45 -106.05 REMARK 500 1 TYR A 104 74.56 60.40 REMARK 500 1 GLU A 106 -57.39 -163.98 REMARK 500 1 SER A 110 66.32 179.99 REMARK 500 1 ASP A 118 -169.04 51.41 REMARK 500 1 ILE A 126 -179.90 -66.95 REMARK 500 1 LYS A 129 77.85 -170.31 REMARK 500 1 PHE A 131 161.16 176.39 REMARK 500 1 VAL A 141 -50.11 -120.52 REMARK 500 1 ASN A 145 -62.71 74.06 REMARK 500 2 SER A -3 115.57 -170.53 REMARK 500 2 SER A 2 63.68 64.01 REMARK 500 2 PRO A 4 -172.36 -69.85 REMARK 500 2 LYS A 8 -75.73 -110.93 REMARK 500 2 THR A 11 44.30 37.12 REMARK 500 2 PRO A 13 -168.34 -69.80 REMARK 500 2 TYR A 23 -74.53 -50.98 REMARK 500 2 THR A 25 72.15 64.06 REMARK 500 2 ARG A 29 -36.61 -179.13 REMARK 500 2 TYR A 34 67.58 -152.16 REMARK 500 2 PRO A 35 -170.24 -69.70 REMARK 500 2 LYS A 45 -29.61 -178.70 REMARK 500 2 ASN A 47 41.51 39.90 REMARK 500 2 ALA A 48 140.96 -178.17 REMARK 500 2 GLN A 67 76.85 51.90 REMARK 500 2 ASP A 80 61.58 -111.05 REMARK 500 2 PHE A 81 88.38 51.48 REMARK 500 2 TYR A 86 141.82 -177.67 REMARK 500 2 ALA A 88 -76.74 -111.61 REMARK 500 2 GLU A 105 -151.55 36.36 REMARK 500 2 GLU A 106 -42.70 -153.36 REMARK 500 2 GLN A 107 50.97 -169.91 REMARK 500 2 SER A 110 63.09 63.60 REMARK 500 REMARK 500 THIS ENTRY HAS 634 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17477 RELATED DB: BMRB DBREF 2L9L A -1 156 UNP P21956 MFGM_MOUSE 306 463 SEQADV 2L9L MET A -5 UNP P21956 EXPRESSION TAG SEQADV 2L9L LYS A -4 UNP P21956 EXPRESSION TAG SEQADV 2L9L SER A -3 UNP P21956 EXPRESSION TAG SEQADV 2L9L GLY A -2 UNP P21956 EXPRESSION TAG SEQADV 2L9L LEU A 157 UNP P21956 EXPRESSION TAG SEQADV 2L9L GLU A 158 UNP P21956 EXPRESSION TAG SEQADV 2L9L HIS A 159 UNP P21956 EXPRESSION TAG SEQADV 2L9L HIS A 160 UNP P21956 EXPRESSION TAG SEQADV 2L9L HIS A 161 UNP P21956 EXPRESSION TAG SEQADV 2L9L HIS A 162 UNP P21956 EXPRESSION TAG SEQADV 2L9L HIS A 163 UNP P21956 EXPRESSION TAG SEQADV 2L9L HIS A 164 UNP P21956 EXPRESSION TAG SEQRES 1 A 170 MET LYS SER GLY HIS GLY CYS SER GLU PRO LEU GLY LEU SEQRES 2 A 170 LYS ASN ASN THR ILE PRO ASP SER GLN MET SER ALA SER SEQRES 3 A 170 SER SER TYR LYS THR TRP ASN LEU ARG ALA PHE GLY TRP SEQRES 4 A 170 TYR PRO HIS LEU GLY ARG LEU ASP ASN GLN GLY LYS ILE SEQRES 5 A 170 ASN ALA TRP THR ALA GLN SER ASN SER ALA LYS GLU TRP SEQRES 6 A 170 LEU GLN VAL ASP LEU GLY THR GLN ARG GLN VAL THR GLY SEQRES 7 A 170 ILE ILE THR GLN GLY ALA ARG ASP PHE GLY HIS ILE GLN SEQRES 8 A 170 TYR VAL ALA SER TYR LYS VAL ALA HIS SER ASP ASP GLY SEQRES 9 A 170 VAL GLN TRP THR VAL TYR GLU GLU GLN GLY SER SER LYS SEQRES 10 A 170 VAL PHE GLN GLY ASN LEU ASP ASN ASN SER HIS LYS LYS SEQRES 11 A 170 ASN ILE PHE GLU LYS PRO PHE MET ALA ARG TYR VAL ARG SEQRES 12 A 170 VAL LEU PRO VAL SER TRP HIS ASN ARG ILE THR LEU ARG SEQRES 13 A 170 LEU GLU LEU LEU GLY CYS LEU GLU HIS HIS HIS HIS HIS SEQRES 14 A 170 HIS SHEET 1 A 4 MET A 17 ALA A 19 0 SHEET 2 A 4 LEU A 60 GLY A 77 -1 O GLN A 61 N SER A 18 SHEET 3 A 4 THR A 148 GLY A 155 -1 O LEU A 154 N GLY A 72 SHEET 4 A 4 TRP A 49 THR A 50 -1 N TRP A 49 O LEU A 149 SHEET 1 B 5 LYS A 123 ASN A 125 0 SHEET 2 B 5 LEU A 60 GLY A 77 -1 N THR A 75 O LYS A 123 SHEET 3 B 5 PHE A 131 HIS A 144 -1 O VAL A 136 N VAL A 62 SHEET 4 B 5 TYR A 86 SER A 95 -1 N ALA A 93 O ARG A 137 SHEET 5 B 5 TRP A 101 THR A 102 -1 O THR A 102 N HIS A 94 SHEET 1 C 3 TRP A 101 THR A 102 0 SHEET 2 C 3 TYR A 86 SER A 95 -1 N HIS A 94 O THR A 102 SHEET 3 C 3 PHE A 113 GLN A 114 -1 O PHE A 113 N TYR A 90 SHEET 1 D 2 ARG A 79 ASP A 80 0 SHEET 2 D 2 HIS A 83 ILE A 84 -1 O HIS A 83 N ASP A 80 SSBOND 1 CYS A 1 CYS A 156 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1