HEADER PEPTIDE BINDING PROTEIN 08-MAR-11 2LA8 TITLE SOLUTION STRUCTURE OF INAD PDZ5 COMPLEXED WITH KON-TIKI PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INACTIVATION-NO-AFTER-POTENTIAL D PROTEIN,KON-TIKI PEPTIDE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: CHIMERA OF UNP RESIDUES 580-665 OF INAD, LINKER, KON- COMPND 6 TIKI PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: INAD, CG3504; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET32A KEYWDS PEPTIDE BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.ZHANG,W.WEN REVDAT 4 29-MAY-24 2LA8 1 REMARK REVDAT 3 14-JUN-23 2LA8 1 REMARK REVDAT 2 12-FEB-20 2LA8 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQADV REVDAT 1 30-NOV-11 2LA8 0 JRNL AUTH W.LIU,W.WEN,Z.WEI,J.YU,F.YE,C.-H.LIU,R.C.HARDIE,M.ZHANG JRNL TITL THE INAD SCAFFOLD IS A DYNAMIC, REDOX-REGULATED MODULATOR OF JRNL TITL 2 SIGNALING IN THE DROSOPHILA EYE JRNL REF CELL(CAMBRIDGE,MASS.) V. 145 1088 2011 JRNL REFN ISSN 0092-8674 JRNL PMID 21703451 JRNL DOI 10.1016/J.CELL.2011.05.015 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LA8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000102151. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N] PROTEIN-1, 10 REMARK 210 MM DTT-2, 50 MM TRIS-3, 50 MM REMARK 210 SODIUM CHLORIDE-4, 1 MM EDTA-5, REMARK 210 90% H2O/10% D2O; 1 MM [U-100% REMARK 210 13C; U-100% 15N] PROTEIN-6, 10 REMARK 210 MM DTT-7, 50 MM TRIS-8, 50 MM REMARK 210 SODIUM CHLORIDE-9, 1 MM EDTA-10, REMARK 210 90% H2O/10% D2O; 1 MM [U-100% REMARK 210 13C; U-100% 15N] PROTEIN-11, 10 REMARK 210 MM [U-100% 2H] DTT-12, 50 MM [U- REMARK 210 100% 2H] TRIS-13, 50 MM SODIUM REMARK 210 CHLORIDE-14, 1 MM EDTA-15, 100% REMARK 210 D2O; 1 MM PROTEIN-16, 10 MM [U- REMARK 210 100% 2H] DTT-17, 50 MM [U-100% REMARK 210 2H] TRIS-18, 50 MM SODIUM REMARK 210 CHLORIDE-19, 1 MM EDTA-20, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H NOESY; REMARK 210 2D 1H-1H TOCSY; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, PIPP, SPARKY, VNMRJ REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 11 68.61 -119.61 REMARK 500 1 ALA A 12 77.33 46.90 REMARK 500 1 LYS A 14 -101.58 -159.40 REMARK 500 1 ASP A 31 -178.02 -172.54 REMARK 500 1 LYS A 43 -71.02 -125.32 REMARK 500 1 PRO A 62 -172.57 -65.01 REMARK 500 1 ASN A 74 100.07 -169.52 REMARK 500 1 LYS A 76 114.19 61.36 REMARK 500 1 SER A 93 155.78 61.17 REMARK 500 1 PRO A 96 -167.94 -72.83 REMARK 500 1 LEU A 98 -71.73 -89.28 REMARK 500 1 ARG A 101 26.22 -142.13 REMARK 500 1 ASN A 102 88.44 -52.36 REMARK 500 2 ALA A 12 27.16 46.09 REMARK 500 2 LYS A 14 -99.09 -169.75 REMARK 500 2 LYS A 43 -73.46 -131.62 REMARK 500 2 ARG A 46 105.00 -59.22 REMARK 500 2 PRO A 62 -167.38 -68.64 REMARK 500 2 ASN A 74 99.60 -167.11 REMARK 500 2 LYS A 76 112.55 60.19 REMARK 500 2 PRO A 84 -175.88 -56.03 REMARK 500 2 SER A 93 154.36 61.33 REMARK 500 2 ARG A 97 79.69 66.64 REMARK 500 2 LEU A 98 -64.97 -93.23 REMARK 500 2 LEU A 99 -163.24 -125.28 REMARK 500 2 ARG A 100 72.73 -66.88 REMARK 500 2 ARG A 101 -49.32 62.70 REMARK 500 2 ASN A 102 86.89 20.16 REMARK 500 3 LYS A 14 -94.23 -162.28 REMARK 500 3 LYS A 43 -73.58 -128.56 REMARK 500 3 PRO A 62 -160.81 -57.45 REMARK 500 3 LYS A 76 115.71 60.36 REMARK 500 3 ARG A 100 -79.12 -52.88 REMARK 500 3 ARG A 101 80.22 -162.08 REMARK 500 3 GLN A 103 -177.51 -68.59 REMARK 500 4 LYS A 14 -96.78 -157.64 REMARK 500 4 LYS A 43 -72.62 -128.34 REMARK 500 4 LYS A 52 144.36 -172.71 REMARK 500 4 PRO A 62 -169.22 -68.38 REMARK 500 4 LYS A 76 115.88 59.29 REMARK 500 4 PRO A 84 -175.71 -66.55 REMARK 500 4 PRO A 86 -174.02 -69.85 REMARK 500 4 PRO A 96 -168.37 -71.63 REMARK 500 4 LEU A 98 -71.70 -93.11 REMARK 500 4 ARG A 101 -79.26 -140.38 REMARK 500 4 ASN A 102 28.04 46.82 REMARK 500 5 LYS A 11 68.52 -118.36 REMARK 500 5 ALA A 12 78.47 45.76 REMARK 500 5 LYS A 14 -99.87 -157.06 REMARK 500 5 LYS A 43 -72.99 -128.79 REMARK 500 REMARK 500 THIS ENTRY HAS 220 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17515 RELATED DB: BMRB REMARK 900 RELATED ID: 3R0H RELATED DB: PDB DBREF 2LA8 A 1 86 UNP Q24008 INAD_DROME 580 665 DBREF 2LA8 A 98 106 UNP Q9VJ82 Q9VJ82_DROME 2373 2381 SEQADV 2LA8 GLY A 87 UNP Q24008 LINKER SEQADV 2LA8 SER A 88 UNP Q24008 LINKER SEQADV 2LA8 GLY A 89 UNP Q24008 LINKER SEQADV 2LA8 GLY A 90 UNP Q24008 LINKER SEQADV 2LA8 SER A 91 UNP Q24008 LINKER SEQADV 2LA8 GLY A 92 UNP Q24008 LINKER SEQADV 2LA8 SER A 93 UNP Q24008 LINKER SEQADV 2LA8 LEU A 94 UNP Q24008 LINKER SEQADV 2LA8 VAL A 95 UNP Q24008 LINKER SEQADV 2LA8 PRO A 96 UNP Q24008 LINKER SEQADV 2LA8 ARG A 97 UNP Q24008 LINKER SEQRES 1 A 106 LEU GLU LYS PHE ASN VAL ASP LEU MET LYS LYS ALA GLY SEQRES 2 A 106 LYS GLU LEU GLY LEU SER LEU SER PRO ASN GLU ILE GLY SEQRES 3 A 106 CYS THR ILE ALA ASP LEU ILE GLN GLY GLN TYR PRO GLU SEQRES 4 A 106 ILE ASP SER LYS LEU GLN ARG GLY ASP ILE ILE THR LYS SEQRES 5 A 106 PHE ASN GLY ASP ALA LEU GLU GLY LEU PRO PHE GLN VAL SEQRES 6 A 106 CYS TYR ALA LEU PHE LYS GLY ALA ASN GLY LYS VAL SER SEQRES 7 A 106 MET GLU VAL THR ARG PRO LYS PRO GLY SER GLY GLY SER SEQRES 8 A 106 GLY SER LEU VAL PRO ARG LEU LEU ARG ARG ASN GLN TYR SEQRES 9 A 106 TRP VAL HELIX 1 1 TYR A 37 SER A 42 1 6 HELIX 2 2 PRO A 62 GLY A 72 1 11 SHEET 1 A 5 GLU A 2 LEU A 8 0 SHEET 2 A 5 VAL A 77 ARG A 83 -1 O VAL A 77 N LEU A 8 SHEET 3 A 5 ILE A 49 PHE A 53 -1 N ILE A 49 O THR A 82 SHEET 4 A 5 CYS A 27 ASP A 31 -1 N CYS A 27 O ILE A 50 SHEET 5 A 5 SER A 19 PRO A 22 -1 N SER A 19 O ASP A 31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1