HEADER TRANSCRIPTION 21-MAR-11 2LAU TITLE SOLUTION STRUCTURE OF THE THAP-ZINC FINGER DOMAIN 1-81 FROM THE CELL TITLE 2 GROWTH SUPPRESSOR HUMAN THAP11 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: THAP DOMAIN-CONTAINING PROTEIN 11; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THAP-TYPE ZINC FINGER REGION; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: THAP11, HRIHFB2206; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-4T2 KEYWDS ZINC FINGER, PROTEIN-DNA COMPLEX, DNA BINDING DOMAIN, TRANSCRIPTION KEYWDS 2 FACTOR, CCCH, TRANSCRIPTION-DNA COMPLEX, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR J.DURAND,S.CAMPAGNE,A.MILON,V.GERVAIS REVDAT 2 14-JUN-23 2LAU 1 REMARK SEQADV LINK REVDAT 1 26-SEP-12 2LAU 0 JRNL AUTH J.DURAND,S.CAMPAGNE,A.MILON,V.GERVAIS JRNL TITL SOLUTION STRUCTURE OF THE THAP DOMAIN FROM THE CELL GROWTH JRNL TITL 2 SUPPRESSOR HUMAN THAP11 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CNS 1.21 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, A.T. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LAU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000102170. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 30 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 THAP DOMAIN, 50 MM TRIS-HCL, 30 REMARK 210 MM SODIUM CHLORIDE, 5 MM DTT, 90% REMARK 210 H2O/10% D2O; 0.7 MM THAP DOMAIN, REMARK 210 50 MM TRIS-HCL, 30 MM SODIUM REMARK 210 CHLORIDE, 5 MM DTT, 90% H2O/10% REMARK 210 D2O; 0.7 MM [U-99% 15N] THAP REMARK 210 DOMAIN, 50 MM TRIS-HCL, 30 MM REMARK 210 SODIUM CHLORIDE, 5 MM DTT, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-1H TOCSY; 2D DQF- REMARK 210 COSY; 2D 1H-1H NOESY; 3D CBCA(CO) REMARK 210 NH; 3D HNCO; 3D HNCA; 3D HNCACB; REMARK 210 3D HBHA(CO)NH; 3D HN(CO)CA; 3D REMARK 210 HNHA; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-15N TOCSY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 3D H(CCO)NH; 3D REMARK 210 C(CO)NH; 3D HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 950 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 112 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS A 7 H VAL A 9 1.57 REMARK 500 N THR A 6 HA SER A 16 1.58 REMARK 500 O CYS A 62 NE2 HIS A 65 2.13 REMARK 500 O CYS A 7 N VAL A 9 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 CYS A 62 CB - CA - C ANGL. DEV. = 7.9 DEGREES REMARK 500 5 CYS A 62 CB - CA - C ANGL. DEV. = 8.1 DEGREES REMARK 500 9 CYS A 62 CB - CA - C ANGL. DEV. = 8.5 DEGREES REMARK 500 10 CYS A 62 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 10 CYS A 62 CA - CB - SG ANGL. DEV. = 10.2 DEGREES REMARK 500 11 CYS A 62 CB - CA - C ANGL. DEV. = 9.6 DEGREES REMARK 500 12 CYS A 62 CB - CA - C ANGL. DEV. = 7.3 DEGREES REMARK 500 13 CYS A 62 CB - CA - C ANGL. DEV. = 9.2 DEGREES REMARK 500 14 CYS A 62 CB - CA - C ANGL. DEV. = 7.8 DEGREES REMARK 500 15 CYS A 62 CB - CA - C ANGL. DEV. = 8.9 DEGREES REMARK 500 16 CYS A 62 CB - CA - C ANGL. DEV. = 8.1 DEGREES REMARK 500 17 CYS A 62 CB - CA - C ANGL. DEV. = 8.2 DEGREES REMARK 500 18 CYS A 62 CB - CA - C ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 172.24 -59.38 REMARK 500 1 PHE A 5 29.78 123.01 REMARK 500 1 CYS A 7 106.43 66.54 REMARK 500 1 CYS A 8 74.72 -52.77 REMARK 500 1 CYS A 12 -133.14 -69.57 REMARK 500 1 TYR A 13 -89.84 -69.60 REMARK 500 1 SER A 16 23.93 -59.35 REMARK 500 1 HIS A 17 52.39 172.04 REMARK 500 1 ARG A 18 18.87 -171.64 REMARK 500 1 ASP A 19 -79.59 -160.21 REMARK 500 1 LEU A 22 -156.51 -114.63 REMARK 500 1 PRO A 28 173.37 -42.87 REMARK 500 1 LEU A 33 -38.19 -37.58 REMARK 500 1 SER A 42 -97.69 156.10 REMARK 500 1 ARG A 43 -157.74 137.89 REMARK 500 1 ALA A 44 67.83 -62.18 REMARK 500 1 SER A 47 -59.65 179.79 REMARK 500 1 PHE A 50 -71.98 -66.76 REMARK 500 1 SER A 51 -10.36 145.87 REMARK 500 1 THR A 52 168.39 -46.98 REMARK 500 1 PHE A 53 33.55 36.22 REMARK 500 1 SER A 63 -86.61 -30.47 REMARK 500 1 VAL A 64 31.87 -53.04 REMARK 500 1 ARG A 70 15.90 82.22 REMARK 500 1 LYS A 71 116.73 61.79 REMARK 500 1 THR A 72 -172.47 -177.27 REMARK 500 1 TYR A 73 -56.26 71.67 REMARK 500 1 THR A 74 -29.37 -175.11 REMARK 500 1 PRO A 78 41.06 -55.88 REMARK 500 2 PHE A 5 12.31 160.33 REMARK 500 2 THR A 6 63.57 -28.56 REMARK 500 2 CYS A 7 16.74 53.22 REMARK 500 2 CYS A 8 65.46 25.48 REMARK 500 2 CYS A 12 -171.84 -60.25 REMARK 500 2 SER A 16 -113.17 -17.17 REMARK 500 2 ARG A 18 -1.99 -146.72 REMARK 500 2 ASP A 19 -67.87 -164.40 REMARK 500 2 LEU A 22 -159.36 -55.40 REMARK 500 2 PRO A 28 174.24 -43.02 REMARK 500 2 LEU A 33 -38.29 -37.86 REMARK 500 2 SER A 42 -94.08 159.95 REMARK 500 2 ALA A 44 70.30 -67.58 REMARK 500 2 VAL A 46 56.70 -90.55 REMARK 500 2 SER A 47 -57.46 -150.45 REMARK 500 2 CYS A 49 37.27 -98.01 REMARK 500 2 PHE A 50 -68.63 -94.91 REMARK 500 2 SER A 51 -173.42 -178.39 REMARK 500 2 THR A 52 58.81 -169.86 REMARK 500 2 GLN A 54 119.22 -30.88 REMARK 500 2 PRO A 55 59.95 -64.55 REMARK 500 REMARK 500 THIS ENTRY HAS 458 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 82 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 7 SG REMARK 620 2 CYS A 12 SG 111.5 REMARK 620 3 CYS A 62 SG 109.3 109.0 REMARK 620 4 HIS A 65 NE2 110.4 112.1 104.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 82 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17456 RELATED DB: BMRB DBREF 2LAU A 3 81 UNP Q96EK4 THA11_HUMAN 2 80 SEQADV 2LAU GLY A 1 UNP Q96EK4 EXPRESSION TAG SEQADV 2LAU SER A 2 UNP Q96EK4 EXPRESSION TAG SEQRES 1 A 81 GLY SER PRO GLY PHE THR CYS CYS VAL PRO GLY CYS TYR SEQRES 2 A 81 ASN ASN SER HIS ARG ASP LYS ALA LEU HIS PHE TYR THR SEQRES 3 A 81 PHE PRO LYS ASP ALA GLU LEU ARG ARG LEU TRP LEU LYS SEQRES 4 A 81 ASN VAL SER ARG ALA GLY VAL SER GLY CYS PHE SER THR SEQRES 5 A 81 PHE GLN PRO THR THR GLY HIS ARG LEU CYS SER VAL HIS SEQRES 6 A 81 PHE GLN GLY GLY ARG LYS THR TYR THR VAL ARG VAL PRO SEQRES 7 A 81 THR ILE PHE HET ZN A 82 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 ASP A 30 SER A 42 1 13 HELIX 2 2 VAL A 64 PHE A 66 5 3 SHEET 1 A 2 PHE A 24 TYR A 25 0 SHEET 2 A 2 LEU A 61 CYS A 62 -1 O LEU A 61 N TYR A 25 LINK SG CYS A 7 ZN ZN A 82 1555 1555 2.31 LINK SG CYS A 12 ZN ZN A 82 1555 1555 2.32 LINK SG CYS A 62 ZN ZN A 82 1555 1555 2.29 LINK NE2 HIS A 65 ZN ZN A 82 1555 1555 1.99 SITE 1 AC1 5 CYS A 7 VAL A 9 CYS A 12 CYS A 62 SITE 2 AC1 5 HIS A 65 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1