HEADER SIGNALING PROTEIN/TRANSCRIPTION 22-MAR-11 2LAW TITLE STRUCTURE OF THE SECOND WW DOMAIN FROM HUMAN YAP IN COMPLEX WITH A TITLE 2 HUMAN SMAD1 DERIVED PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: YORKIE HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SECOND WW DOMAIN, RESIDUES 230-263; COMPND 5 SYNONYM: 65 KDA YES-ASSOCIATED PROTEIN, YAP65; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 222-233; COMPND 11 SYNONYM: MAD HOMOLOG 1, MOTHERS AGAINST DPP HOMOLOG 1, JV4-1, MAD- COMPND 12 RELATED PROTEIN 1, SMAD FAMILY MEMBER 1, SMAD 1, SMAD1, HSMAD1, COMPND 13 TRANSFORMING GROWTH FACTOR-BETA-SIGNALING PROTEIN 1, BSP-1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YAP1, YAP65; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PETM11; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS YAP, SMAD1, CDK, SIGNAL TRANSDUCTION, SIGNALING PROTEIN-TRANSCRIPTION KEYWDS 2 COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.J.MACIAS,E.ARAGON,N.GOERNER,A.ZAROMYTIDOU,Q.XI,A.ESCOBEDO, AUTHOR 2 J.MASSAGUE REVDAT 1 06-JUL-11 2LAW 0 JRNL AUTH E.ARAGON,N.GOERNER,A.I.ZAROMYTIDOU,Q.XI,A.ESCOBEDO, JRNL AUTH 2 J.MASSAGUE,M.J.MACIAS JRNL TITL A SMAD ACTION TURNOVER SWITCH OPERATED BY WW DOMAIN READERS JRNL TITL 2 OF A PHOSPHOSERINE CODE. JRNL REF GENES DEV. V. 25 1275 2011 JRNL REFN ISSN 0890-9369 JRNL PMID 21685363 JRNL DOI 10.1101/GAD.2060811 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LAW COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-11. REMARK 100 THE RCSB ID CODE IS RCSB102172. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 285 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.420 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM NEDD4LWW3, 3 MM SMAD3, 20 REMARK 210 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 2 MM SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O; 1 MM [U- REMARK 210 100% 15N] NEDD4LWW3, 3 MM SMAD3, REMARK 210 20 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 2 MM SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O; 1 MM [U- REMARK 210 100% 13C; U-100% 15N] NEDD4LWW3, REMARK 210 3 MM SMAD3, 20 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 2 MM SODIUM AZIDE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 2D 1H- REMARK 210 15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.3, XEASY, TOPSPIN, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 226 REMARK 465 ALA A 227 REMARK 465 MET A 228 REMARK 465 GLU A 229 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 ASN A 250 HB2 ASN A 253 1.25 REMARK 500 HE1 TYR A 247 HG12 ILE A 249 1.50 REMARK 500 HG21 ILE A 249 HA THR A 256 1.51 REMARK 500 HD13 LEU A 232 HE2 TYR A 248 1.58 REMARK 500 HE1 HIS A 251 HA PRO B 229 1.59 REMARK 500 OD2 ASP A 234 HZ3 LYS A 252 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 258 -70.22 -71.72 REMARK 500 1 ALA B 226 178.28 -59.21 REMARK 500 1 ASP B 232 -54.56 -120.17 REMARK 500 2 ALA B 226 178.15 -56.90 REMARK 500 4 PRO B 225 150.26 -48.64 REMARK 500 5 PRO B 225 155.53 -48.93 REMARK 500 6 ALA B 226 -179.91 -56.85 REMARK 500 7 ALA B 226 -179.69 -60.82 REMARK 500 8 TRP A 258 -70.18 -60.14 REMARK 500 8 ALA B 226 -179.64 -59.89 REMARK 500 9 TRP A 258 -70.10 -59.89 REMARK 500 9 ALA B 226 -179.74 -59.16 REMARK 500 10 TRP A 258 -70.01 -60.35 REMARK 500 11 TRP A 258 -70.18 -62.33 REMARK 500 11 ALA B 226 -179.56 -58.24 REMARK 500 12 ALA B 226 -179.69 -58.87 REMARK 500 13 ALA B 226 -179.70 -57.60 REMARK 500 14 ALA B 226 178.78 -55.62 REMARK 500 15 TRP A 258 -70.06 -60.00 REMARK 500 15 ALA B 226 -179.80 -58.17 REMARK 500 16 TRP A 258 -70.20 -69.00 REMARK 500 16 ALA B 226 179.02 -57.94 REMARK 500 17 ALA B 226 -179.77 -60.73 REMARK 500 18 TRP A 258 -70.07 -73.85 REMARK 500 18 ALA B 226 -179.92 -59.00 REMARK 500 18 TYR B 227 99.53 -69.67 REMARK 500 19 TRP A 258 -70.10 -61.14 REMARK 500 19 ALA B 226 -179.87 -55.97 REMARK 500 20 ALA B 226 -179.81 -61.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 236 GLU A 237 1 -146.95 REMARK 500 PRO B 229 PRO B 230 1 -143.99 REMARK 500 TRP A 236 GLU A 237 2 -144.98 REMARK 500 PRO B 229 PRO B 230 2 -137.44 REMARK 500 TRP A 236 GLU A 237 3 -146.65 REMARK 500 PRO B 229 PRO B 230 3 -144.61 REMARK 500 TRP A 236 GLU A 237 4 -146.31 REMARK 500 PRO B 229 PRO B 230 4 -145.24 REMARK 500 TRP A 236 GLU A 237 5 -145.50 REMARK 500 PRO B 229 PRO B 230 5 -145.07 REMARK 500 TRP A 236 GLU A 237 6 -144.64 REMARK 500 PRO B 229 PRO B 230 6 -146.71 REMARK 500 TRP A 236 GLU A 237 7 -143.96 REMARK 500 PRO B 229 PRO B 230 7 -146.74 REMARK 500 TRP A 236 GLU A 237 8 -146.24 REMARK 500 PRO B 229 PRO B 230 8 -146.83 REMARK 500 TRP A 236 GLU A 237 9 -144.49 REMARK 500 PRO B 229 PRO B 230 9 -142.10 REMARK 500 TRP A 236 GLU A 237 10 -144.21 REMARK 500 PRO B 229 PRO B 230 10 -145.03 REMARK 500 TRP A 236 GLU A 237 11 -144.82 REMARK 500 PRO B 229 PRO B 230 11 -144.90 REMARK 500 TRP A 236 GLU A 237 12 -144.96 REMARK 500 PRO B 229 PRO B 230 12 -144.48 REMARK 500 TRP A 236 GLU A 237 13 -145.21 REMARK 500 PRO B 229 PRO B 230 13 -145.38 REMARK 500 TRP A 236 GLU A 237 14 -144.17 REMARK 500 PRO B 229 PRO B 230 14 -144.65 REMARK 500 TRP A 236 GLU A 237 15 -145.20 REMARK 500 PRO B 229 PRO B 230 15 -143.30 REMARK 500 TRP A 236 GLU A 237 16 -147.27 REMARK 500 PRO B 229 PRO B 230 16 -145.18 REMARK 500 TRP A 236 GLU A 237 17 -146.85 REMARK 500 PRO B 229 PRO B 230 17 -142.69 REMARK 500 TRP A 236 GLU A 237 18 -146.60 REMARK 500 PRO B 229 PRO B 230 18 -139.70 REMARK 500 TRP A 236 GLU A 237 19 -145.49 REMARK 500 PRO B 229 PRO B 230 19 -143.74 REMARK 500 TRP A 236 GLU A 237 20 -146.15 REMARK 500 PRO B 229 PRO B 230 20 -143.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17538 RELATED DB: BMRB REMARK 900 RELATED ID: 2LAX RELATED DB: PDB REMARK 900 RELATED ID: 2LAY RELATED DB: PDB REMARK 900 RELATED ID: 2LAZ RELATED DB: PDB REMARK 900 RELATED ID: 2LB0 RELATED DB: PDB REMARK 900 RELATED ID: 2LB1 RELATED DB: PDB REMARK 900 RELATED ID: 2LB2 RELATED DB: PDB REMARK 900 RELATED ID: 2LB3 RELATED DB: PDB DBREF 2LAW A 230 263 UNP P46937 YAP1_HUMAN 230 263 DBREF 2LAW B 222 233 UNP Q15797 SMAD1_HUMAN 222 233 SEQADV 2LAW GLY A 226 UNP P46937 EXPRESSION TAG SEQADV 2LAW ALA A 227 UNP P46937 EXPRESSION TAG SEQADV 2LAW MET A 228 UNP P46937 EXPRESSION TAG SEQADV 2LAW GLU A 229 UNP P46937 EXPRESSION TAG SEQRES 1 A 38 GLY ALA MET GLU GLY PRO LEU PRO ASP GLY TRP GLU GLN SEQRES 2 A 38 ALA MET THR GLN ASP GLY GLU ILE TYR TYR ILE ASN HIS SEQRES 3 A 38 LYS ASN LYS THR THR SER TRP LEU ASP PRO ARG LEU SEQRES 1 B 12 THR PRO PRO PRO ALA TYR LEU PRO PRO GLU ASP PRO SHEET 1 A 3 GLN A 238 THR A 241 0 SHEET 2 A 3 GLU A 245 ASN A 250 -1 O GLU A 245 N THR A 241 SHEET 3 A 3 THR A 255 SER A 257 -1 O SER A 257 N TYR A 248 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1