HEADER TRANSFERASE 23-MAR-11 2LB5 TITLE REFINED STRUCTURAL BASIS FOR THE PHOTOCONVERSION OF A PHYTOCHROME TO TITLE 2 THE ACTIVATED FAR-RED LIGHT-ABSORBING FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR HISTIDINE KINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS SP. JA-2-3B'A(2-13); SOURCE 3 ORGANISM_TAXID: 321332; SOURCE 4 STRAIN: JA-2-3B'A(2-13); SOURCE 5 GENE: CYB_2465; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-4T KEYWDS PCB, KINASE, TRANSFERASE, GAF DOMAIN, PHOSPHOPROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.C.CORNILESCU,G.CORNILESCU,A.T.ULIJASZ,R.D.VIERSTRA,J.L.MARKLEY REVDAT 3 14-JUN-23 2LB5 1 REMARK SEQADV LINK REVDAT 2 01-JAN-14 2LB5 1 JRNL VERSN REVDAT 1 29-JUN-11 2LB5 0 JRNL AUTH A.T.ULIJASZ,G.CORNILESCU,C.C.CORNILESCU,J.ZHANG,M.RIVERA, JRNL AUTH 2 J.L.MARKLEY,R.D.VIERSTRA JRNL TITL STRUCTURAL BASIS FOR THE PHOTOCONVERSION OF A PHYTOCHROME TO JRNL TITL 2 THE ACTIVATED PFR FORM. JRNL REF NATURE V. 463 250 2010 JRNL REFN ISSN 0028-0836 JRNL PMID 20075921 JRNL DOI 10.1038/NATURE08671 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000102181. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 8.5 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-2 MM [U-13C; U-15N] PROTEIN, REMARK 210 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, PIPP REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 THR A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 TRP A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 ARG A 11 REMARK 465 PRO A 12 REMARK 465 SER A 13 REMARK 465 ARG A 14 REMARK 465 ASP A 15 REMARK 465 ALA A 16 REMARK 465 LEU A 17 REMARK 465 ILE A 18 REMARK 465 ASN A 19 REMARK 465 ARG A 20 REMARK 465 ILE A 21 REMARK 465 THR A 22 REMARK 465 HIS A 23 REMARK 465 GLN A 24 REMARK 465 ILE A 25 REMARK 465 ARG A 26 REMARK 465 GLN A 27 REMARK 465 SER A 28 REMARK 465 LEU A 29 REMARK 465 GLU A 30 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 465 HIS A 206 REMARK 465 HIS A 207 REMARK 465 HIS A 208 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 141 H SER A 145 1.49 REMARK 500 O LEU A 94 H ALA A 98 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 88 -93.03 -70.07 REMARK 500 1 GLU A 89 -48.03 -166.69 REMARK 500 1 GLN A 99 57.27 31.73 REMARK 500 1 VAL A 100 -49.01 -146.24 REMARK 500 1 ARG A 101 98.78 45.82 REMARK 500 1 VAL A 106 -8.83 -56.50 REMARK 500 1 ILE A 113 -167.53 -117.83 REMARK 500 1 GLU A 117 81.59 39.00 REMARK 500 1 SER A 118 53.90 -143.95 REMARK 500 1 ARG A 124 85.00 179.95 REMARK 500 1 LEU A 127 -116.22 55.28 REMARK 500 1 PRO A 130 157.69 -46.29 REMARK 500 1 ASP A 136 158.70 -45.01 REMARK 500 1 HIS A 159 -109.61 67.51 REMARK 500 1 GLU A 172 97.84 -46.99 REMARK 500 1 PRO A 173 32.89 -97.27 REMARK 500 1 ARG A 174 155.78 57.44 REMARK 500 2 PRO A 88 -116.57 -44.69 REMARK 500 2 GLU A 89 -59.46 -151.87 REMARK 500 2 GLN A 99 61.43 36.63 REMARK 500 2 VAL A 100 -42.86 -143.15 REMARK 500 2 ARG A 101 92.43 49.00 REMARK 500 2 GLU A 117 -82.96 52.14 REMARK 500 2 SER A 118 169.48 55.48 REMARK 500 2 TRP A 119 -141.93 43.88 REMARK 500 2 LEU A 127 -110.34 38.51 REMARK 500 2 PRO A 130 166.90 -46.31 REMARK 500 2 ASP A 136 152.33 -44.58 REMARK 500 2 PRO A 137 -9.43 -46.99 REMARK 500 2 HIS A 159 -110.18 73.51 REMARK 500 2 ALA A 171 -163.45 -55.32 REMARK 500 2 PRO A 175 172.60 -48.75 REMARK 500 3 GLU A 72 49.96 -173.80 REMARK 500 3 PRO A 88 -101.10 -33.83 REMARK 500 3 GLU A 89 -32.44 -169.06 REMARK 500 3 GLN A 99 63.24 34.99 REMARK 500 3 VAL A 106 -8.28 -57.07 REMARK 500 3 ILE A 113 -166.83 -119.45 REMARK 500 3 GLN A 115 130.65 -173.90 REMARK 500 3 PRO A 116 109.24 -38.65 REMARK 500 3 ARG A 124 88.71 60.60 REMARK 500 3 LEU A 127 -114.05 40.73 REMARK 500 3 PRO A 130 166.16 -45.26 REMARK 500 3 ASP A 136 155.77 -40.15 REMARK 500 3 CYS A 138 -18.89 -47.21 REMARK 500 3 VAL A 154 79.34 -156.28 REMARK 500 3 HIS A 159 -103.31 63.77 REMARK 500 3 ALA A 171 -171.36 -54.58 REMARK 500 4 GLU A 72 62.08 -174.04 REMARK 500 4 PRO A 88 -94.59 -37.72 REMARK 500 REMARK 500 THIS ENTRY HAS 297 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYC A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17546 RELATED DB: BMRB REMARK 900 RELATED ID: 2LB9 RELATED DB: PDB DBREF 2LB5 A 1 200 UNP Q2JIZ5 Q2JIZ5_SYNJB 1 200 SEQADV 2LB5 SER A 201 UNP Q2JIZ5 EXPRESSION TAG SEQADV 2LB5 LEU A 202 UNP Q2JIZ5 EXPRESSION TAG SEQADV 2LB5 HIS A 203 UNP Q2JIZ5 EXPRESSION TAG SEQADV 2LB5 HIS A 204 UNP Q2JIZ5 EXPRESSION TAG SEQADV 2LB5 HIS A 205 UNP Q2JIZ5 EXPRESSION TAG SEQADV 2LB5 HIS A 206 UNP Q2JIZ5 EXPRESSION TAG SEQADV 2LB5 HIS A 207 UNP Q2JIZ5 EXPRESSION TAG SEQADV 2LB5 HIS A 208 UNP Q2JIZ5 EXPRESSION TAG SEQRES 1 A 208 MET ASP THR GLU THR TRP ALA ALA ALA ALA ARG PRO SER SEQRES 2 A 208 ARG ASP ALA LEU ILE ASN ARG ILE THR HIS GLN ILE ARG SEQRES 3 A 208 GLN SER LEU GLU LEU ASP GLN ILE LEU ARG ALA THR VAL SEQRES 4 A 208 GLU GLU VAL ARG ALA PHE LEU GLY THR ASP ARG VAL LYS SEQRES 5 A 208 VAL TYR ARG PHE ASP PRO GLU GLY HIS GLY THR VAL VAL SEQRES 6 A 208 ALA GLU ALA ARG GLY GLY GLU ARG LEU PRO SER LEU LEU SEQRES 7 A 208 GLY LEU THR PHE PRO ALA GLY ASP ILE PRO GLU GLU ALA SEQRES 8 A 208 ARG ARG LEU PHE ARG LEU ALA GLN VAL ARG VAL ILE VAL SEQRES 9 A 208 ASP VAL GLU ALA GLN SER ARG SER ILE SER GLN PRO GLU SEQRES 10 A 208 SER TRP GLY LEU SER ALA ARG VAL PRO LEU GLY GLU PRO SEQRES 11 A 208 LEU GLN ARG PRO VAL ASP PRO CYS HIS VAL HIS TYR LEU SEQRES 12 A 208 LYS SER MET GLY VAL ALA SER SER LEU VAL VAL PRO LEU SEQRES 13 A 208 MET HIS HIS GLN GLU LEU TRP GLY LEU LEU VAL SER HIS SEQRES 14 A 208 HIS ALA GLU PRO ARG PRO TYR SER GLN GLU GLU LEU GLN SEQRES 15 A 208 VAL VAL GLN LEU LEU ALA ASP GLN VAL SER ILE ALA ILE SEQRES 16 A 208 ALA GLN ALA GLU LEU SER LEU HIS HIS HIS HIS HIS HIS HET CYC A 301 81 HETNAM CYC PHYCOCYANOBILIN FORMUL 2 CYC C33 H40 N4 O6 HELIX 1 1 LEU A 31 GLY A 47 1 17 HELIX 2 2 GLY A 85 ILE A 87 5 3 HELIX 3 3 GLU A 89 ALA A 98 1 10 HELIX 4 4 ASP A 105 GLN A 109 5 5 HELIX 5 5 ASP A 136 MET A 146 1 11 HELIX 6 6 SER A 177 LEU A 202 1 26 SHEET 1 A 6 THR A 81 PRO A 83 0 SHEET 2 A 6 HIS A 61 ARG A 69 -1 N GLY A 62 O PHE A 82 SHEET 3 A 6 ARG A 50 ARG A 55 -1 N ARG A 55 O THR A 63 SHEET 4 A 6 GLU A 161 HIS A 170 -1 O LEU A 165 N TYR A 54 SHEET 5 A 6 SER A 150 HIS A 158 -1 N VAL A 154 O LEU A 166 SHEET 6 A 6 VAL A 102 ILE A 103 -1 N ILE A 103 O SER A 151 LINK SG CYS A 138 CAC CYC A 301 1555 1555 1.84 SITE 1 AC1 15 LYS A 52 TYR A 54 ASP A 86 ILE A 87 SITE 2 AC1 15 PRO A 88 GLU A 90 ALA A 91 ARG A 101 SITE 3 AC1 15 ILE A 103 VAL A 135 ASP A 136 CYS A 138 SITE 4 AC1 15 TYR A 142 VAL A 167 HIS A 169 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1