HEADER LIGASE 15-APR-11 2LC3 TITLE SOLUTION NMR STRUCTURE OF A HELICAL BUNDLE DOMAIN FROM HUMAN E3 LIGASE TITLE 2 HECTD1. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET TITLE 3 HT6305A COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE HECTD1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 1879-1966; COMPND 5 SYNONYM: E3 LIGASE FOR INHIBIN RECEPTOR, EULIR, HECT DOMAIN- COMPND 6 CONTAINING PROTEIN 1; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HECTD1, KIAA1131; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28-MHL KEYWDS HELICAL BUNDLE, STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, NESG, STRUCTURAL GENOMICS CONSORTIUM, SGC, LIGASE, PSI- KEYWDS 3 BIOLOGY EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.LEMAK,A.YEE,S.HOULISTON,M.GARCIA,C.ARROWSMITH,S.DHE-PAGANON, AUTHOR 2 G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 14-JUN-23 2LC3 1 REMARK REVDAT 2 29-JUN-11 2LC3 1 AUTHOR KEYWDS REVDAT 1 22-JUN-11 2LC3 0 JRNL AUTH A.LEMAK,A.YEE,S.HOULISTON,M.GARCIA,C.ARROWSMITH, JRNL AUTH 2 S.DHE-PAGANON JRNL TITL NMR SOLUTION STRUCTURE OF A HELICAL BUNDLE FROM THE E3 JRNL TITL 2 LIGASE HECTD1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LC3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000102213. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.7 REMARK 210 IONIC STRENGTH : 500 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] PROTEIN, REMARK 210 10 MM TRIS, 500 MM SODIUM REMARK 210 CHLORIDE, 10 UM ZNSO4, 10 MM DTT, REMARK 210 0.01 % NAN3, 10 MM BENZAMIDINE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D CBCA(CO)NH; REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, FMC, TALOS, PSVS, CYANA REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 LYS A 8 43.37 -102.09 REMARK 500 2 LYS A 12 86.12 -65.13 REMARK 500 2 ASN A 86 68.98 -112.87 REMARK 500 3 LYS A 12 86.99 -67.50 REMARK 500 3 LEU A 85 89.33 -64.71 REMARK 500 4 LYS A 12 87.31 -65.49 REMARK 500 4 ASN A 65 -146.13 -125.17 REMARK 500 4 LEU A 85 44.06 -94.86 REMARK 500 4 ASN A 86 46.02 -88.14 REMARK 500 6 THR A 81 121.95 -39.55 REMARK 500 7 LEU A 85 -70.17 -67.54 REMARK 500 9 GLU A 7 -46.61 -132.05 REMARK 500 9 THR A 81 150.83 -43.83 REMARK 500 11 LYS A 8 45.17 -96.68 REMARK 500 11 LEU A 30 85.76 -150.36 REMARK 500 12 THR A 81 150.75 -44.26 REMARK 500 13 ASP A 5 0.95 -66.91 REMARK 500 13 SER A 83 13.96 52.12 REMARK 500 14 LYS A 12 95.07 -64.54 REMARK 500 15 SER A 83 -19.14 -44.65 REMARK 500 15 LEU A 85 -62.13 -126.74 REMARK 500 16 LEU A 30 83.71 -151.41 REMARK 500 17 LYS A 8 73.18 -118.24 REMARK 500 17 LEU A 30 85.99 -151.32 REMARK 500 17 THR A 81 155.57 -42.83 REMARK 500 17 ASN A 86 13.13 -144.60 REMARK 500 18 THR A 81 123.76 -37.97 REMARK 500 19 THR A 81 153.15 -44.67 REMARK 500 20 LYS A 8 9.68 -150.22 REMARK 500 20 SER A 83 30.96 -83.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17594 RELATED DB: BMRB REMARK 900 RELATED ID: HT6305A RELATED DB: TARGETDB DBREF 2LC3 A 1 88 UNP Q9ULT8 HECD1_HUMAN 1879 1966 SEQRES 1 A 88 MET LYS ASP SER ASP LYS GLU LYS GLU ASN GLY LYS MET SEQRES 2 A 88 GLY CYS TRP SER ILE GLU HIS VAL GLU GLN TYR LEU GLY SEQRES 3 A 88 THR ASP GLU LEU PRO LYS ASN ASP LEU ILE THR TYR LEU SEQRES 4 A 88 GLN LYS ASN ALA ASP ALA ALA PHE LEU ARG HIS TRP LYS SEQRES 5 A 88 LEU THR GLY THR ASN LYS SER ILE ARG LYS ASN ARG ASN SEQRES 6 A 88 CYS SER GLN LEU ILE ALA ALA TYR LYS ASP PHE CYS GLU SEQRES 7 A 88 HIS GLY THR LYS SER GLY LEU ASN GLN GLY HELIX 1 1 SER A 4 GLU A 9 1 6 HELIX 2 2 SER A 17 LEU A 25 1 9 HELIX 3 3 PRO A 31 ALA A 43 1 13 HELIX 4 4 ASP A 44 TRP A 51 1 8 HELIX 5 5 THR A 56 ARG A 64 1 9 HELIX 6 6 ASN A 65 GLY A 80 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1