HEADER PEPTIDOGLYCAN-BINDING PROTEIN 26-APR-11 2LCA TITLE SOLUTION STRUCTURE OF THE C DOMAIN OF RV0899 FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN RV0899/MT0922; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: OMPA-LIKE RESIDUES 196-326; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: RV0899, MT0922, MTCY31.27; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET21B KEYWDS PEPTIDOGLYCAN-BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.MARASSI,Y.YAO REVDAT 5 06-DEC-23 2LCA 1 LINK REVDAT 4 14-JUN-23 2LCA 1 REMARK SEQADV LINK REVDAT 3 15-FEB-12 2LCA 1 JRNL REVDAT 2 18-JAN-12 2LCA 1 HEADER REVDAT 1 04-JAN-12 2LCA 0 JRNL AUTH Y.YAO,N.BARGHAVA,J.KIM,M.NIEDERWEIS,F.M.MARASSI JRNL TITL MOLECULAR STRUCTURE AND PEPTIDOGLYCAN RECOGNITION OF JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS ARFA (RV0899). JRNL REF J.MOL.BIOL. V. 416 208 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22206986 JRNL DOI 10.1016/J.JMB.2011.12.030 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LCA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000102220. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 C(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 TYR A 237 OH REMARK 470 TYR A 260 OH REMARK 470 TYR A 284 OH REMARK 470 ASN A 326 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 209 153.44 -47.43 REMARK 500 1 PRO A 234 157.97 -49.14 REMARK 500 1 ASP A 236 -100.09 -67.99 REMARK 500 1 VAL A 303 -67.72 -134.98 REMARK 500 1 ARG A 320 170.86 -58.18 REMARK 500 2 ALA A 198 88.89 62.24 REMARK 500 2 SER A 205 -179.32 63.16 REMARK 500 2 ALA A 230 -74.69 -119.31 REMARK 500 2 SER A 231 -66.82 -94.61 REMARK 500 2 LEU A 232 98.01 67.57 REMARK 500 2 ALA A 235 -85.01 -142.28 REMARK 500 2 VAL A 303 148.45 -174.90 REMARK 500 2 ASN A 304 75.03 64.08 REMARK 500 3 ALA A 198 83.85 71.29 REMARK 500 3 PRO A 207 32.91 -81.03 REMARK 500 3 SER A 231 113.56 -162.06 REMARK 500 3 VAL A 303 -61.27 -142.94 REMARK 500 3 ARG A 320 177.60 -57.50 REMARK 500 4 SER A 205 -154.27 54.45 REMARK 500 4 ALA A 230 171.65 65.82 REMARK 500 4 SER A 231 -155.62 58.23 REMARK 500 4 ASN A 304 77.59 52.22 REMARK 500 4 ILE A 306 -55.72 -127.70 REMARK 500 4 ARG A 320 170.69 -57.42 REMARK 500 5 ALA A 198 128.19 70.39 REMARK 500 5 SER A 205 88.33 58.60 REMARK 500 5 ALA A 230 -56.57 70.86 REMARK 500 5 SER A 231 36.46 -81.68 REMARK 500 5 LEU A 232 104.94 63.60 REMARK 500 5 ALA A 235 -71.18 -152.30 REMARK 500 5 ASP A 236 -75.96 -118.06 REMARK 500 5 TYR A 237 -51.94 71.47 REMARK 500 5 GLU A 267 -46.02 -160.98 REMARK 500 5 VAL A 303 -60.91 -150.21 REMARK 500 5 ILE A 306 -48.62 -134.13 REMARK 500 5 ARG A 320 179.00 -58.34 REMARK 500 6 PRO A 200 39.86 -83.31 REMARK 500 6 ALA A 204 27.34 -74.27 REMARK 500 6 ALA A 230 -164.33 -117.55 REMARK 500 6 ALA A 235 2.31 -69.66 REMARK 500 6 SER A 266 -83.99 -69.05 REMARK 500 6 GLU A 267 168.60 176.01 REMARK 500 6 VAL A 303 152.65 179.81 REMARK 500 6 ASN A 304 79.03 66.44 REMARK 500 6 ARG A 320 -173.69 -63.18 REMARK 500 7 ALA A 198 91.88 61.52 REMARK 500 7 SER A 205 -55.32 73.79 REMARK 500 7 ASN A 227 -78.26 -109.05 REMARK 500 7 ASP A 228 115.15 -178.94 REMARK 500 7 VAL A 303 -56.52 -149.25 REMARK 500 REMARK 500 THIS ENTRY HAS 138 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17575 RELATED DB: BMRB DBREF 2LCA A 196 326 UNP P65593 Y899_MYCTU 196 326 SEQADV 2LCA HIS A 327 UNP P65593 EXPRESSION TAG SEQADV 2LCA HIS A 328 UNP P65593 EXPRESSION TAG SEQADV 2LCA HIS A 329 UNP P65593 EXPRESSION TAG SEQADV 2LCA HIS A 330 UNP P65593 EXPRESSION TAG SEQADV 2LCA HIS A 331 UNP P65593 EXPRESSION TAG SEQADV 2LCA HIS A 332 UNP P65593 EXPRESSION TAG SEQRES 1 A 137 GLY GLN ALA PRO PRO GLY PRO PRO ALA SER GLY PRO CYS SEQRES 2 A 137 ALA ASP LEU GLN SER ALA ILE ASN ALA VAL THR GLY GLY SEQRES 3 A 137 PRO ILE ALA PHE GLY ASN ASP GLY ALA SER LEU ILE PRO SEQRES 4 A 137 ALA ASP TYR GLU ILE LEU ASN ARG VAL ALA ASP LYS LEU SEQRES 5 A 137 LYS ALA CYS PRO ASP ALA ARG VAL THR ILE ASN GLY TYR SEQRES 6 A 137 THR ASP ASN THR GLY SER GLU GLY ILE ASN ILE PRO LEU SEQRES 7 A 137 SER ALA GLN ARG ALA LYS ILE VAL ALA ASP TYR LEU VAL SEQRES 8 A 137 ALA ARG GLY VAL ALA GLY ASP HIS ILE ALA THR VAL GLY SEQRES 9 A 137 LEU GLY SER VAL ASN PRO ILE ALA SER ASN ALA THR PRO SEQRES 10 A 137 GLU GLY ARG ALA LYS ASN ARG ARG VAL GLU ILE VAL VAL SEQRES 11 A 137 ASN HIS HIS HIS HIS HIS HIS HELIX 1 1 ASP A 210 GLY A 220 1 11 HELIX 2 2 TYR A 237 CYS A 250 1 14 HELIX 3 3 ILE A 269 ARG A 288 1 20 HELIX 4 4 ALA A 291 ASP A 293 5 3 HELIX 5 5 THR A 311 ARG A 319 1 9 SHEET 1 A 3 ILE A 295 GLY A 301 0 SHEET 2 A 3 VAL A 255 TYR A 260 1 N ILE A 257 O ALA A 296 SHEET 3 A 3 VAL A 321 VAL A 325 -1 O VAL A 324 N THR A 256 SSBOND 1 CYS A 208 CYS A 250 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1