HEADER HYDROLASE 29-APR-11 2LCJ TITLE SOLUTION NMR STRUCTURE OF PAB POLII INTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAB POLC INTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PAB POL II INTEIN; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI; SOURCE 3 ORGANISM_TAXID: 272844; SOURCE 4 STRAIN: GE5 / ORSAY; SOURCE 5 GENE: POLC, PYRAB01200, PAB2404; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PETM44 KEYWDS HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.JIAJING,K.V.MILLS,C.D.ALBRACHT REVDAT 3 14-JUN-23 2LCJ 1 REMARK REVDAT 2 16-NOV-11 2LCJ 1 JRNL REVDAT 1 21-SEP-11 2LCJ 0 JRNL AUTH Z.DU,J.LIU,C.D.ALBRACHT,A.HSU,W.CHEN,M.D.MARIENI, JRNL AUTH 2 K.M.COLELLI,J.E.WILLIAMS,J.N.REITTER,K.V.MILLS,C.WANG JRNL TITL STRUCTURAL AND MUTATIONAL STUDIES OF A HYPERTHERMOPHILIC JRNL TITL 2 INTEIN FROM DNA POLYMERASE II OF PYROCOCCUS ABYSSI. JRNL REF J.BIOL.CHEM. V. 286 38638 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21914805 JRNL DOI 10.1074/JBC.M111.290569 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, CYANA 3.0, X-PLOR NIH 2.27 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR REFINEMENT WITH EXPLICIT WATER REMARK 3 FOR FINAL STRUCTURE, STRUCTURE MODEL BUILD. REMARK 4 REMARK 4 2LCJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000102229. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 320 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH 2.27 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 20 H LEU A 24 1.52 REMARK 500 HZ2 LYS A 48 OD2 ASP A 63 1.54 REMARK 500 H VAL A 95 O LYS A 106 1.56 REMARK 500 O ILE A 177 H ILE A 181 1.56 REMARK 500 OD2 ASP A 53 HG1 THR A 56 1.58 REMARK 500 OE2 GLU A 99 HZ2 LYS A 106 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 30 82.36 63.36 REMARK 500 1 LYS A 42 109.87 84.24 REMARK 500 1 ASP A 66 175.48 176.93 REMARK 500 1 ALA A 72 96.69 -64.56 REMARK 500 1 THR A 90 15.27 -69.80 REMARK 500 1 VAL A 91 -36.36 70.60 REMARK 500 1 GLU A 121 13.57 46.13 REMARK 500 1 VAL A 125 -66.37 70.81 REMARK 500 1 GLU A 126 98.29 -68.07 REMARK 500 1 SER A 130 173.91 70.09 REMARK 500 1 ASN A 134 -59.18 -170.24 REMARK 500 1 GLU A 138 -155.05 -85.65 REMARK 500 1 LEU A 140 -65.46 72.68 REMARK 500 1 GLU A 144 118.20 -178.80 REMARK 500 1 SER A 166 -23.37 -158.38 REMARK 500 1 LEU A 167 107.03 67.17 REMARK 500 1 LYS A 171 -25.81 84.55 REMARK 500 1 TYR A 172 140.95 65.52 REMARK 500 1 ASN A 178 -130.65 47.90 REMARK 500 2 ASP A 30 86.07 60.60 REMARK 500 2 LYS A 42 111.77 82.16 REMARK 500 2 ASP A 66 175.33 174.18 REMARK 500 2 ASP A 74 -169.99 -110.97 REMARK 500 2 VAL A 91 161.33 63.66 REMARK 500 2 ASP A 92 -30.61 73.28 REMARK 500 2 GLU A 121 12.20 45.79 REMARK 500 2 LEU A 124 -48.31 -149.00 REMARK 500 2 GLU A 126 129.18 82.94 REMARK 500 2 GLN A 127 -53.17 -142.08 REMARK 500 2 SER A 130 -172.66 61.93 REMARK 500 2 LYS A 136 50.27 71.19 REMARK 500 2 GLU A 144 90.16 -162.73 REMARK 500 2 ARG A 158 -142.83 -82.66 REMARK 500 2 ASP A 161 -178.40 -173.20 REMARK 500 2 SER A 166 -28.20 -155.76 REMARK 500 2 LEU A 167 107.04 71.32 REMARK 500 2 LYS A 171 -13.54 77.93 REMARK 500 2 TYR A 172 128.02 51.19 REMARK 500 2 ASN A 178 -133.23 48.69 REMARK 500 2 HIS A 184 50.12 -112.07 REMARK 500 3 ASP A 30 81.63 61.41 REMARK 500 3 LYS A 42 111.75 86.46 REMARK 500 3 ASP A 66 -179.20 177.56 REMARK 500 3 ASP A 74 -138.70 -143.45 REMARK 500 3 VAL A 91 169.27 59.81 REMARK 500 3 ASP A 92 -41.26 73.11 REMARK 500 3 GLU A 121 39.81 -62.72 REMARK 500 3 SER A 128 -78.54 -81.10 REMARK 500 3 ASN A 137 -68.34 -123.83 REMARK 500 3 GLU A 138 -108.00 -134.44 REMARK 500 REMARK 500 THIS ENTRY HAS 454 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17418 RELATED DB: BMRB REMARK 900 NMR ASSIGNMENT DBREF 2LCJ A 1 185 UNP Q9V2F4 DP2L_PYRAB 955 1139 SEQRES 1 A 185 CYS PHE PRO GLY ASP THR ARG ILE LEU VAL GLN ILE ASP SEQRES 2 A 185 GLY VAL PRO GLN LYS ILE THR LEU ARG GLU LEU TYR GLU SEQRES 3 A 185 LEU PHE GLU ASP GLU ARG TYR GLU ASN MET VAL TYR VAL SEQRES 4 A 185 ARG LYS LYS PRO LYS ARG GLU ILE LYS VAL TYR SER ILE SEQRES 5 A 185 ASP LEU GLU THR GLY LYS VAL VAL LEU THR ASP ILE GLU SEQRES 6 A 185 ASP VAL ILE LYS ALA PRO ALA THR ASP HIS LEU ILE ARG SEQRES 7 A 185 PHE GLU LEU GLU ASP GLY ARG SER PHE GLU THR THR VAL SEQRES 8 A 185 ASP HIS PRO VAL LEU VAL TYR GLU ASN GLY ARG PHE ILE SEQRES 9 A 185 GLU LYS ARG ALA PHE GLU VAL LYS GLU GLY ASP LYS VAL SEQRES 10 A 185 LEU VAL SER GLU LEU GLU LEU VAL GLU GLN SER SER SER SEQRES 11 A 185 SER GLN ASP ASN PRO LYS ASN GLU ASN LEU GLY SER PRO SEQRES 12 A 185 GLU HIS ASP GLN LEU LEU GLU ILE LYS ASN ILE LYS TYR SEQRES 13 A 185 VAL ARG ALA ASN ASP ASP PHE VAL PHE SER LEU ASN ALA SEQRES 14 A 185 LYS LYS TYR HIS ASN VAL ILE ILE ASN GLU ASN ILE VAL SEQRES 15 A 185 THR HIS GLN HELIX 1 1 LEU A 21 TYR A 25 1 5 HELIX 2 2 GLU A 26 PHE A 28 5 3 HELIX 3 3 PHE A 109 VAL A 111 5 3 SHEET 1 A 5 PHE A 2 PRO A 3 0 SHEET 2 A 5 PHE A 163 PHE A 165 -1 O PHE A 165 N PHE A 2 SHEET 3 A 5 LYS A 58 PRO A 71 -1 N ALA A 70 O VAL A 164 SHEET 4 A 5 VAL A 37 ARG A 40 -1 N TYR A 38 O LYS A 69 SHEET 5 A 5 GLU A 31 GLU A 34 -1 N ARG A 32 O VAL A 39 SHEET 1 B 5 VAL A 15 THR A 20 0 SHEET 2 B 5 ARG A 7 ILE A 12 -1 N ILE A 12 O VAL A 15 SHEET 3 B 5 ILE A 47 ASP A 53 -1 O LYS A 48 N GLN A 11 SHEET 4 B 5 LYS A 58 PRO A 71 -1 O VAL A 60 N SER A 51 SHEET 5 B 5 ASN A 168 ALA A 169 -1 O ASN A 168 N ASP A 66 SHEET 1 C 6 SER A 86 THR A 89 0 SHEET 2 C 6 LEU A 76 LEU A 81 -1 N PHE A 79 O PHE A 87 SHEET 3 C 6 LEU A 149 VAL A 157 -1 O ASN A 153 N GLU A 80 SHEET 4 C 6 LYS A 116 VAL A 119 -1 N VAL A 117 O LEU A 149 SHEET 5 C 6 ILE A 181 HIS A 184 -1 O VAL A 182 N LEU A 118 SHEET 6 C 6 ASN A 174 ILE A 177 -1 N ILE A 177 O ILE A 181 SHEET 1 D 2 PRO A 94 GLU A 99 0 SHEET 2 D 2 ARG A 102 ARG A 107 -1 O LYS A 106 N VAL A 95 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1