data_2LDD # _entry.id 2LDD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LDD pdb_00002ldd 10.2210/pdb2ldd/pdb RCSB RCSB102258 ? ? BMRB 17659 ? 10.13018/BMR17659 WWPDB D_1000102258 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-06 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 2 0 2023-11-15 4 'Structure model' 2 1 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' struct_conn 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_entry_details 8 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.auth_atom_id' 2 3 'Structure model' '_atom_site.label_atom_id' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_struct_conn.pdbx_dist_value' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 8 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 4 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LDD _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-05-21 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 17659 BMRB unspecified . 2LDA PDB unspecified . 2LDC PDB unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Phillips, C.' 1 'Bazin, R.' 2 'Bent, A.' 3 'Davies, N.' 4 'Moore, R.' 5 'Pannifer, A.' 6 'Pickford, A.' 7 'Prior, S.' 8 'Read, C.' 9 'Roberts, L.' 10 'Schade, M.' 11 'Scott, A.' 12 'Brown, D.' 13 'Xu, B.' 14 'Irving, S.' 15 # _citation.id primary _citation.title 'Design and structure of stapled peptides binding to estrogen receptors.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 133 _citation.page_first 9696 _citation.page_last 9699 _citation.year 2011 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21612236 _citation.pdbx_database_id_DOI 10.1021/ja202946k # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Phillips, C.' 1 ? primary 'Roberts, L.R.' 2 ? primary 'Schade, M.' 3 ? primary 'Bazin, R.' 4 ? primary 'Bent, A.' 5 ? primary 'Davies, N.L.' 6 ? primary 'Moore, R.' 7 ? primary 'Pannifer, A.D.' 8 ? primary 'Pickford, A.R.' 9 ? primary 'Prior, S.H.' 10 ? primary 'Read, C.M.' 11 ? primary 'Scott, A.' 12 ? primary 'Brown, D.G.' 13 ? primary 'Xu, B.' 14 ? primary 'Irving, S.L.' 15 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Estrogen receptor-binding stapled peptide SP6' _entity.formula_weight 1634.039 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)EKHKIL(MK8)RLL(MK8)DS(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XEKHKILLRLLLDSX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 GLU n 1 3 LYS n 1 4 HIS n 1 5 LYS n 1 6 ILE n 1 7 LEU n 1 8 MK8 n 1 9 ARG n 1 10 LEU n 1 11 LEU n 1 12 MK8 n 1 13 ASP n 1 14 SER n 1 15 NH2 n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MK8 'L-peptide linking' n 2-methyl-L-norleucine ? 'C7 H15 N O2' 145.199 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 GLU 2 1 1 GLU GLU A . n A 1 3 LYS 3 2 2 LYS LYS A . n A 1 4 HIS 4 3 3 HIS HIS A . n A 1 5 LYS 5 4 4 LYS LYS A . n A 1 6 ILE 6 5 5 ILE ILE A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 MK8 8 7 7 MK8 MK8 A . n A 1 9 ARG 9 8 8 ARG ARG A . n A 1 10 LEU 10 9 9 LEU LEU A . n A 1 11 LEU 11 10 10 LEU LEU A . n A 1 12 MK8 12 11 11 MK8 MK8 A . n A 1 13 ASP 13 12 12 ASP ASP A . n A 1 14 SER 14 13 13 SER SER A . n A 1 15 NH2 15 14 14 NH2 NH2 A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'Stapled peptide SP6' _exptl.entry_id 2LDD _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LDD _struct.title 'Solution structure of the estrogen receptor-binding stapled peptide SP6 (Ac-EKHKILXRLLXDS-NH2)' _struct.pdbx_model_details 'closest to the average, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LDD _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text 'DE NOVO PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2LDD _struct_ref.pdbx_db_accession 2LDD _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LDD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 15 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2LDD _struct_ref_seq.db_align_beg 0 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 14 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 14 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id GLU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 2 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id MK8 _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 12 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 1 _struct_conf.end_auth_comp_id MK8 _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 11 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A GLU 2 N ? ? A ACE 0 A GLU 1 1_555 ? ? ? ? ? ? ? 1.375 ? ? covale2 covale both ? A LEU 7 C ? ? ? 1_555 A MK8 8 N ? ? A LEU 6 A MK8 7 1_555 ? ? ? ? ? ? ? 1.390 ? ? covale3 covale both ? A MK8 8 C ? ? ? 1_555 A ARG 9 N ? ? A MK8 7 A ARG 8 1_555 ? ? ? ? ? ? ? 1.399 ? ? covale4 covale none ? A MK8 8 CE ? ? ? 1_555 A MK8 12 CE ? ? A MK8 7 A MK8 11 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale5 covale both ? A LEU 11 C ? ? ? 1_555 A MK8 12 N ? ? A LEU 10 A MK8 11 1_555 ? ? ? ? ? ? ? 1.403 ? ? covale6 covale both ? A MK8 12 C ? ? ? 1_555 A ASP 13 N ? ? A MK8 11 A ASP 12 1_555 ? ? ? ? ? ? ? 1.390 ? ? covale7 covale both ? A SER 14 C ? ? ? 1_555 A NH2 15 N ? ? A SER 13 A NH2 14 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MK8 A 8 ? . . . . MK8 A 7 ? 1_555 . . . . . . . LEU 1 MK8 Norleucine 'Named protein modification' 2 MK8 A 8 ? . . . . MK8 A 7 ? 1_555 . . . . . . . LEU 2 MK8 Methylation 'Named protein modification' 3 MK8 A 12 ? . . . . MK8 A 11 ? 1_555 . . . . . . . LEU 1 MK8 Norleucine 'Named protein modification' 4 MK8 A 12 ? . . . . MK8 A 11 ? 1_555 . . . . . . . LEU 2 MK8 Methylation 'Named protein modification' 5 ACE A 1 ? GLU A 2 ? ACE A 0 ? 1_555 GLU A 1 ? 1_555 . . GLU 10 ACE None 'Terminal acetylation' 6 NH2 A 15 ? SER A 14 ? NH2 A 14 ? 1_555 SER A 13 ? 1_555 . . SER 6 NH2 None 'Terminal amidation' 7 MK8 A 8 ? MK8 A 12 ? MK8 A 7 ? 1_555 MK8 A 11 ? 1_555 CE CE . . . None 'Non-standard linkage' # _pdbx_entry_details.entry_id 2LDD _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 10 ? ? -76.51 -74.16 2 1 MK8 A 11 ? ? -57.43 0.64 3 2 MK8 A 11 ? ? -48.59 -18.96 4 3 MK8 A 11 ? ? -48.33 -14.70 5 5 MK8 A 11 ? ? -53.73 -6.58 6 7 MK8 A 11 ? ? -53.19 -6.34 7 9 MK8 A 11 ? ? -58.99 -5.16 8 10 MK8 A 11 ? ? -57.69 -5.42 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MK8 8 A MK8 7 ? LEU 2-METHYL-L-NORLEUCINE 2 A MK8 12 A MK8 11 ? LEU 2-METHYL-L-NORLEUCINE # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LDD _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LDD _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '5 mM stapled peptide SP6, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '5 mM stapled peptide SP6, 100% D2O' 2 '100% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'stapled peptide SP6-1' 5 ? mM ? 1 'stapled peptide SP6-2' 5 ? mM ? 2 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 50 _pdbx_nmr_exptl_sample_conditions.pH 5.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H COSY' 1 2 1 '2D 1H-1H TOCSY' 1 3 1 '2D 1H-1H NOESY' 1 4 2 '2D 1H-1H COSY' 1 5 2 '2D 1H-1H TOCSY' 1 6 2 '2D 1H-1H NOESY' # _pdbx_nmr_refine.entry_id 2LDD _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Varian collection VNMR ? 1 'Andy Pickford' 'structure solution' NMRSwarm 0.1 2 'Andy Pickford' 'data analysis' NMRSwarm 0.1 3 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 4 CCPN 'chemical shift assignment' Analysis ? 5 ? refinement NMRSwarm ? 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ARG N N N N 8 ARG CA C N S 9 ARG C C N N 10 ARG O O N N 11 ARG CB C N N 12 ARG CG C N N 13 ARG CD C N N 14 ARG NE N N N 15 ARG CZ C N N 16 ARG NH1 N N N 17 ARG NH2 N N N 18 ARG OXT O N N 19 ARG H H N N 20 ARG H2 H N N 21 ARG HA H N N 22 ARG HB2 H N N 23 ARG HB3 H N N 24 ARG HG2 H N N 25 ARG HG3 H N N 26 ARG HD2 H N N 27 ARG HD3 H N N 28 ARG HE H N N 29 ARG HH11 H N N 30 ARG HH12 H N N 31 ARG HH21 H N N 32 ARG HH22 H N N 33 ARG HXT H N N 34 ASP N N N N 35 ASP CA C N S 36 ASP C C N N 37 ASP O O N N 38 ASP CB C N N 39 ASP CG C N N 40 ASP OD1 O N N 41 ASP OD2 O N N 42 ASP OXT O N N 43 ASP H H N N 44 ASP H2 H N N 45 ASP HA H N N 46 ASP HB2 H N N 47 ASP HB3 H N N 48 ASP HD2 H N N 49 ASP HXT H N N 50 GLU N N N N 51 GLU CA C N S 52 GLU C C N N 53 GLU O O N N 54 GLU CB C N N 55 GLU CG C N N 56 GLU CD C N N 57 GLU OE1 O N N 58 GLU OE2 O N N 59 GLU OXT O N N 60 GLU H H N N 61 GLU H2 H N N 62 GLU HA H N N 63 GLU HB2 H N N 64 GLU HB3 H N N 65 GLU HG2 H N N 66 GLU HG3 H N N 67 GLU HE2 H N N 68 GLU HXT H N N 69 HIS N N N N 70 HIS CA C N S 71 HIS C C N N 72 HIS O O N N 73 HIS CB C N N 74 HIS CG C Y N 75 HIS ND1 N Y N 76 HIS CD2 C Y N 77 HIS CE1 C Y N 78 HIS NE2 N Y N 79 HIS OXT O N N 80 HIS H H N N 81 HIS H2 H N N 82 HIS HA H N N 83 HIS HB2 H N N 84 HIS HB3 H N N 85 HIS HD1 H N N 86 HIS HD2 H N N 87 HIS HE1 H N N 88 HIS HE2 H N N 89 HIS HXT H N N 90 ILE N N N N 91 ILE CA C N S 92 ILE C C N N 93 ILE O O N N 94 ILE CB C N S 95 ILE CG1 C N N 96 ILE CG2 C N N 97 ILE CD1 C N N 98 ILE OXT O N N 99 ILE H H N N 100 ILE H2 H N N 101 ILE HA H N N 102 ILE HB H N N 103 ILE HG12 H N N 104 ILE HG13 H N N 105 ILE HG21 H N N 106 ILE HG22 H N N 107 ILE HG23 H N N 108 ILE HD11 H N N 109 ILE HD12 H N N 110 ILE HD13 H N N 111 ILE HXT H N N 112 LEU N N N N 113 LEU CA C N S 114 LEU C C N N 115 LEU O O N N 116 LEU CB C N N 117 LEU CG C N N 118 LEU CD1 C N N 119 LEU CD2 C N N 120 LEU OXT O N N 121 LEU H H N N 122 LEU H2 H N N 123 LEU HA H N N 124 LEU HB2 H N N 125 LEU HB3 H N N 126 LEU HG H N N 127 LEU HD11 H N N 128 LEU HD12 H N N 129 LEU HD13 H N N 130 LEU HD21 H N N 131 LEU HD22 H N N 132 LEU HD23 H N N 133 LEU HXT H N N 134 LYS N N N N 135 LYS CA C N S 136 LYS C C N N 137 LYS O O N N 138 LYS CB C N N 139 LYS CG C N N 140 LYS CD C N N 141 LYS CE C N N 142 LYS NZ N N N 143 LYS OXT O N N 144 LYS H H N N 145 LYS H2 H N N 146 LYS HA H N N 147 LYS HB2 H N N 148 LYS HB3 H N N 149 LYS HG2 H N N 150 LYS HG3 H N N 151 LYS HD2 H N N 152 LYS HD3 H N N 153 LYS HE2 H N N 154 LYS HE3 H N N 155 LYS HZ1 H N N 156 LYS HZ2 H N N 157 LYS HZ3 H N N 158 LYS HXT H N N 159 MK8 C C N N 160 MK8 N N N N 161 MK8 O O N N 162 MK8 CA C N S 163 MK8 CB C N N 164 MK8 CD C N N 165 MK8 CE C N N 166 MK8 CG C N N 167 MK8 CB1 C N N 168 MK8 OXT O N N 169 MK8 H H N N 170 MK8 H2 H N N 171 MK8 HB H N N 172 MK8 HBA H N N 173 MK8 HD H N N 174 MK8 HDA H N N 175 MK8 HE H N N 176 MK8 HEA H N N 177 MK8 HEB H N N 178 MK8 HG H N N 179 MK8 HGA H N N 180 MK8 HB1 H N N 181 MK8 HB1A H N N 182 MK8 HB1B H N N 183 MK8 HXT H N N 184 NH2 N N N N 185 NH2 HN1 H N N 186 NH2 HN2 H N N 187 SER N N N N 188 SER CA C N S 189 SER C C N N 190 SER O O N N 191 SER CB C N N 192 SER OG O N N 193 SER OXT O N N 194 SER H H N N 195 SER H2 H N N 196 SER HA H N N 197 SER HB2 H N N 198 SER HB3 H N N 199 SER HG H N N 200 SER HXT H N N 201 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ARG N CA sing N N 7 ARG N H sing N N 8 ARG N H2 sing N N 9 ARG CA C sing N N 10 ARG CA CB sing N N 11 ARG CA HA sing N N 12 ARG C O doub N N 13 ARG C OXT sing N N 14 ARG CB CG sing N N 15 ARG CB HB2 sing N N 16 ARG CB HB3 sing N N 17 ARG CG CD sing N N 18 ARG CG HG2 sing N N 19 ARG CG HG3 sing N N 20 ARG CD NE sing N N 21 ARG CD HD2 sing N N 22 ARG CD HD3 sing N N 23 ARG NE CZ sing N N 24 ARG NE HE sing N N 25 ARG CZ NH1 sing N N 26 ARG CZ NH2 doub N N 27 ARG NH1 HH11 sing N N 28 ARG NH1 HH12 sing N N 29 ARG NH2 HH21 sing N N 30 ARG NH2 HH22 sing N N 31 ARG OXT HXT sing N N 32 ASP N CA sing N N 33 ASP N H sing N N 34 ASP N H2 sing N N 35 ASP CA C sing N N 36 ASP CA CB sing N N 37 ASP CA HA sing N N 38 ASP C O doub N N 39 ASP C OXT sing N N 40 ASP CB CG sing N N 41 ASP CB HB2 sing N N 42 ASP CB HB3 sing N N 43 ASP CG OD1 doub N N 44 ASP CG OD2 sing N N 45 ASP OD2 HD2 sing N N 46 ASP OXT HXT sing N N 47 GLU N CA sing N N 48 GLU N H sing N N 49 GLU N H2 sing N N 50 GLU CA C sing N N 51 GLU CA CB sing N N 52 GLU CA HA sing N N 53 GLU C O doub N N 54 GLU C OXT sing N N 55 GLU CB CG sing N N 56 GLU CB HB2 sing N N 57 GLU CB HB3 sing N N 58 GLU CG CD sing N N 59 GLU CG HG2 sing N N 60 GLU CG HG3 sing N N 61 GLU CD OE1 doub N N 62 GLU CD OE2 sing N N 63 GLU OE2 HE2 sing N N 64 GLU OXT HXT sing N N 65 HIS N CA sing N N 66 HIS N H sing N N 67 HIS N H2 sing N N 68 HIS CA C sing N N 69 HIS CA CB sing N N 70 HIS CA HA sing N N 71 HIS C O doub N N 72 HIS C OXT sing N N 73 HIS CB CG sing N N 74 HIS CB HB2 sing N N 75 HIS CB HB3 sing N N 76 HIS CG ND1 sing Y N 77 HIS CG CD2 doub Y N 78 HIS ND1 CE1 doub Y N 79 HIS ND1 HD1 sing N N 80 HIS CD2 NE2 sing Y N 81 HIS CD2 HD2 sing N N 82 HIS CE1 NE2 sing Y N 83 HIS CE1 HE1 sing N N 84 HIS NE2 HE2 sing N N 85 HIS OXT HXT sing N N 86 ILE N CA sing N N 87 ILE N H sing N N 88 ILE N H2 sing N N 89 ILE CA C sing N N 90 ILE CA CB sing N N 91 ILE CA HA sing N N 92 ILE C O doub N N 93 ILE C OXT sing N N 94 ILE CB CG1 sing N N 95 ILE CB CG2 sing N N 96 ILE CB HB sing N N 97 ILE CG1 CD1 sing N N 98 ILE CG1 HG12 sing N N 99 ILE CG1 HG13 sing N N 100 ILE CG2 HG21 sing N N 101 ILE CG2 HG22 sing N N 102 ILE CG2 HG23 sing N N 103 ILE CD1 HD11 sing N N 104 ILE CD1 HD12 sing N N 105 ILE CD1 HD13 sing N N 106 ILE OXT HXT sing N N 107 LEU N CA sing N N 108 LEU N H sing N N 109 LEU N H2 sing N N 110 LEU CA C sing N N 111 LEU CA CB sing N N 112 LEU CA HA sing N N 113 LEU C O doub N N 114 LEU C OXT sing N N 115 LEU CB CG sing N N 116 LEU CB HB2 sing N N 117 LEU CB HB3 sing N N 118 LEU CG CD1 sing N N 119 LEU CG CD2 sing N N 120 LEU CG HG sing N N 121 LEU CD1 HD11 sing N N 122 LEU CD1 HD12 sing N N 123 LEU CD1 HD13 sing N N 124 LEU CD2 HD21 sing N N 125 LEU CD2 HD22 sing N N 126 LEU CD2 HD23 sing N N 127 LEU OXT HXT sing N N 128 LYS N CA sing N N 129 LYS N H sing N N 130 LYS N H2 sing N N 131 LYS CA C sing N N 132 LYS CA CB sing N N 133 LYS CA HA sing N N 134 LYS C O doub N N 135 LYS C OXT sing N N 136 LYS CB CG sing N N 137 LYS CB HB2 sing N N 138 LYS CB HB3 sing N N 139 LYS CG CD sing N N 140 LYS CG HG2 sing N N 141 LYS CG HG3 sing N N 142 LYS CD CE sing N N 143 LYS CD HD2 sing N N 144 LYS CD HD3 sing N N 145 LYS CE NZ sing N N 146 LYS CE HE2 sing N N 147 LYS CE HE3 sing N N 148 LYS NZ HZ1 sing N N 149 LYS NZ HZ2 sing N N 150 LYS NZ HZ3 sing N N 151 LYS OXT HXT sing N N 152 MK8 C CA sing N N 153 MK8 C OXT sing N N 154 MK8 N H sing N N 155 MK8 N H2 sing N N 156 MK8 O C doub N N 157 MK8 CA N sing N N 158 MK8 CA CB sing N N 159 MK8 CB HB sing N N 160 MK8 CB HBA sing N N 161 MK8 CD CG sing N N 162 MK8 CD HD sing N N 163 MK8 CD HDA sing N N 164 MK8 CE CD sing N N 165 MK8 CE HE sing N N 166 MK8 CE HEA sing N N 167 MK8 CE HEB sing N N 168 MK8 CG CB sing N N 169 MK8 CG HG sing N N 170 MK8 CG HGA sing N N 171 MK8 CB1 CA sing N N 172 MK8 CB1 HB1 sing N N 173 MK8 CB1 HB1A sing N N 174 MK8 CB1 HB1B sing N N 175 MK8 OXT HXT sing N N 176 NH2 N HN1 sing N N 177 NH2 N HN2 sing N N 178 SER N CA sing N N 179 SER N H sing N N 180 SER N H2 sing N N 181 SER CA C sing N N 182 SER CA CB sing N N 183 SER CA HA sing N N 184 SER C O doub N N 185 SER C OXT sing N N 186 SER CB OG sing N N 187 SER CB HB2 sing N N 188 SER CB HB3 sing N N 189 SER OG HG sing N N 190 SER OXT HXT sing N N 191 # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Varian INOVA' # _atom_sites.entry_id 2LDD _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_