HEADER TRANSCRIPTION/PROTEIN BINDING 30-MAY-11 2LDM TITLE SOLUTION STRUCTURE OF HUMAN PHF20 TUDOR2 DOMAIN BOUND TO A P53 SEGMENT TITLE 2 CONTAINING A DIMETHYLLYSINE ANALOG P53K370ME2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PTEV KEYWDS PHF20, TUDOR DOMAIN, EPIGENETICS, METHYLATED P53, TRANSCRIPTION KEYWDS 2 FACTOR, TRANSCRIPTION-PROTEIN BINDING COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.CUI,M.BOTUYAN,G.MER REVDAT 6 27-NOV-24 2LDM 1 REMARK REVDAT 5 15-NOV-23 2LDM 1 REMARK LINK ATOM REVDAT 4 03-OCT-12 2LDM 1 JRNL REVDAT 3 15-AUG-12 2LDM 1 JRNL REVDAT 2 08-AUG-12 2LDM 1 JRNL REVDAT 1 30-MAY-12 2LDM 0 JRNL AUTH G.CUI,S.PARK,A.I.BADEAUX,D.KIM,J.LEE,J.R.THOMPSON,F.YAN, JRNL AUTH 2 S.KANEKO,Z.YUAN,M.V.BOTUYAN,M.T.BEDFORD,J.Q.CHENG,G.MER JRNL TITL PHF20 IS AN EFFECTOR PROTEIN OF P53 DOUBLE LYSINE JRNL TITL 2 METHYLATION THAT STABILIZES AND ACTIVATES P53. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 916 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22864287 JRNL DOI 10.1038/NSMB.2353 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, AMBER 8 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), CASE, DARDEN, CHEATHAM, III, SIMMERLING, REMARK 3 WANG, DUKE, LUO, AND KOLLM (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000102266. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0.025 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N] PROTEIN, 25 MM REMARK 210 SODIUM PHOSPHATE, 0.3 MM DSS, 90% REMARK 210 H2O/10% D2O; 1 MM [U-100% 13C; REMARK 210 U-100% 15N] PROTEIN, 25 MM REMARK 210 SODIUM PHOSPHATE, 0.3 MM DSS, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 HN(CA)CO; 3D CCH-TOCSY; 2D (HB) REMARK 210 CB(CGCD)HD; 2D (HB)CB(CGCDCE)HE; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, SANE, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 81 REMARK 465 HIS A 82 REMARK 465 MET A 83 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 85 51.75 -141.03 REMARK 500 1 SER A 100 -68.55 -171.72 REMARK 500 1 VAL A 143 -62.89 -137.90 REMARK 500 2 SER A 100 17.83 92.54 REMARK 500 2 VAL A 143 -35.31 -135.08 REMARK 500 2 HIS A 368 35.87 -79.10 REMARK 500 3 SER A 100 -68.20 -168.68 REMARK 500 3 ARG A 101 -158.00 -154.57 REMARK 500 3 VAL A 143 -44.53 -145.06 REMARK 500 4 SER A 100 -68.73 -168.57 REMARK 500 4 ARG A 101 -157.79 -156.27 REMARK 500 4 HIS A 368 42.71 -78.93 REMARK 500 4 LYS A 373 35.27 -140.53 REMARK 500 5 SER A 100 -67.55 -169.82 REMARK 500 5 ARG A 101 -158.12 -147.23 REMARK 500 5 VAL A 143 -48.26 -149.74 REMARK 500 5 ALA A 146 67.89 -119.70 REMARK 500 6 SER A 100 -67.51 -169.49 REMARK 500 6 ARG A 101 -157.59 -154.52 REMARK 500 6 VAL A 143 -40.50 -134.01 REMARK 500 6 ARG A 147 -3.06 77.73 REMARK 500 6 ALA A 364 -158.30 -154.22 REMARK 500 7 SER A 85 46.66 -141.11 REMARK 500 7 SER A 100 -67.99 -169.13 REMARK 500 7 ARG A 101 -158.19 -156.21 REMARK 500 7 ASP A 139 -70.30 -65.64 REMARK 500 7 VAL A 143 -51.23 -153.37 REMARK 500 7 ASN A 145 76.10 -152.26 REMARK 500 7 ARG A 147 -45.43 -150.23 REMARK 500 7 ALA A 364 -152.70 -156.64 REMARK 500 8 GLU A 86 -3.40 -142.39 REMARK 500 8 ASN A 90 -0.24 64.63 REMARK 500 8 SER A 100 -74.66 -169.55 REMARK 500 8 ARG A 101 -157.25 -139.48 REMARK 500 8 VAL A 143 -41.52 -140.38 REMARK 500 8 HIS A 365 -152.40 -171.38 REMARK 500 9 SER A 85 26.64 -144.75 REMARK 500 9 SER A 100 -64.29 -171.96 REMARK 500 9 HIS A 368 44.58 -80.98 REMARK 500 10 PHE A 87 83.26 72.18 REMARK 500 10 SER A 100 -72.75 -169.59 REMARK 500 10 ARG A 101 -156.14 -147.39 REMARK 500 10 ARG A 147 -2.33 -143.89 REMARK 500 10 ALA A 364 -165.39 -160.20 REMARK 500 10 HIS A 368 24.82 -75.88 REMARK 500 11 PHE A 87 80.96 72.22 REMARK 500 11 SER A 100 8.44 110.70 REMARK 500 11 ASP A 139 -76.76 -69.37 REMARK 500 11 ARG A 147 -21.59 -157.47 REMARK 500 11 ALA A 364 -164.52 -160.10 REMARK 500 REMARK 500 THIS ENTRY HAS 100 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17673 RELATED DB: BMRB DBREF 2LDM A 81 374 PDB 2LDM 2LDM 81 374 SEQRES 1 A 81 GLY HIS MET SER SER GLU PHE GLN ILE ASN GLU GLN VAL SEQRES 2 A 81 LEU ALA SER TRP SER ASP SER ARG PHE TYR PRO ALA LYS SEQRES 3 A 81 VAL THR ALA VAL ASN LYS ASP GLY THR TYR THR VAL LYS SEQRES 4 A 81 PHE TYR ASP GLY VAL VAL GLN THR VAL LYS HIS ILE HIS SEQRES 5 A 81 VAL LYS ALA PHE SER LYS ASP GLN ASN ILE VAL GLY ASN SEQRES 6 A 81 ALA ARG GLY SER ARG ALA HIS SER SER HIS LEU M2L SER SEQRES 7 A 81 LYS LYS GLY MODRES 2LDM M2L A 370 LYS HET M2L A 370 26 HETNAM M2L (2R)-2-AMINO-3-(2-DIMETHYLAMINOETHYLSULFANYL)PROPANOIC HETNAM 2 M2L ACID FORMUL 1 M2L C7 H16 N2 O2 S SHEET 1 A 5 VAL A 124 LYS A 129 0 SHEET 2 A 5 THR A 115 PHE A 120 -1 N PHE A 120 O VAL A 124 SHEET 3 A 5 PHE A 102 ASN A 111 -1 N LYS A 106 O LYS A 119 SHEET 4 A 5 GLN A 92 SER A 96 -1 N ALA A 95 O TYR A 103 SHEET 5 A 5 VAL A 133 LYS A 134 -1 O LYS A 134 N LEU A 94 LINK C LEU A 369 N M2L A 370 1555 1555 1.34 LINK C M2L A 370 N SER A 371 1555 1555 1.34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1