HEADER HYDROLASE 20-JUN-11 2LEP TITLE SOLUTION STRUCTURE OF N-TERMINAL CYTOSOLIC DOMAIN OF RHOMBOID TITLE 2 INTRAMEMBRANE PROTEASE FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHOMBOID PROTEASE GLPG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 1-61; COMPND 5 SYNONYM: INTRAMEMBRANE SERINE PROTEASE 1; COMPND 6 EC: 3.4.21.105; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GLPG1, ECS4267; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 30A + KEYWDS CELL MEMBRANE, CYTOSOL, MEMBRANE PROTEIN, MICELLES, SERINE PROTEASE, KEYWDS 2 DOMAIN SWAPPING, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.R.SHERRATT,H.GHASRIANI,N.K.GOTO REVDAT 4 01-MAY-24 2LEP 1 REMARK SEQADV REVDAT 3 17-OCT-12 2LEP 1 JRNL REVDAT 2 03-OCT-12 2LEP 1 JRNL REVDAT 1 20-JUN-12 2LEP 0 JRNL AUTH A.R.SHERRATT,D.R.BLAIS,H.GHASRIANI,J.P.PEZACKI,N.K.GOTO JRNL TITL ACTIVITY-BASED PROTEIN PROFILING OF THE ESCHERICHIA COLI JRNL TITL 2 GLPG RHOMBOID PROTEIN DELINEATES THE CATALYTIC CORE. JRNL REF BIOCHEMISTRY V. 51 7794 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22963263 JRNL DOI 10.1021/BI301087C REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, X-PLOR NIH 2.22 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: EXPLICIT SOLVENT REFINEMENT. REMARK 4 REMARK 4 2LEP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000102302. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.15 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.30 M NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 13C; U-100% 15N] REMARK 210 NGLPG, 25MM NAH2PO4, 150MM NACL, REMARK 210 90% H2O/10% D2O; 1.0 MM [U-100% REMARK 210 13C; U-100% 15N] NGLPG, 25MM REMARK 210 NAH2PO4, 150MM NACL, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D HBHA(CO)NH; REMARK 210 3D HN(CO)CA; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 64 REMARK 465 HIS A 65 REMARK 465 HIS A 66 REMARK 465 HIS A 67 REMARK 465 HIS A 68 REMARK 465 HIS A 69 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 41 H GLN A 44 1.29 REMARK 500 O GLU A 51 H PHE A 55 1.32 REMARK 500 O LEU A 27 HG1 THR A 28 1.33 REMARK 500 O ARG A 47 H GLU A 51 1.34 REMARK 500 O PHE A 16 H MET A 20 1.36 REMARK 500 O PRO A 10 H GLN A 14 1.38 REMARK 500 O THR A 5 H VAL A 37 1.40 REMARK 500 O VAL A 17 H ALA A 21 1.41 REMARK 500 HH12 ARG A 54 O LEU A 62 1.43 REMARK 500 O PHE A 7 HG SER A 35 1.44 REMARK 500 HD1 HIS A 32 OD2 ASP A 36 1.45 REMARK 500 O GLU A 57 HD21 ASN A 58 1.46 REMARK 500 O GLN A 44 H VAL A 48 1.48 REMARK 500 H GLN A 30 O ASP A 36 1.48 REMARK 500 OD2 ASP A 61 H LEU A 62 1.49 REMARK 500 OD1 ASP A 41 HG SER A 43 1.51 REMARK 500 O ILE A 26 H ALA A 40 1.52 REMARK 500 O ARG A 11 H ALA A 15 1.53 REMARK 500 H1 MET A 1 OE2 GLU A 42 1.53 REMARK 500 HG SER A 6 OD1 ASP A 36 1.55 REMARK 500 O LEU A 2 H LEU A 39 1.56 REMARK 500 HH TYR A 19 O ASP A 61 1.57 REMARK 500 O ALA A 45 H ARG A 49 1.58 REMARK 500 O PRO A 59 H ASP A 61 1.58 REMARK 500 O MET A 20 H VAL A 25 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 27 -163.70 -113.32 REMARK 500 1 THR A 28 159.16 179.15 REMARK 500 1 GLN A 31 106.37 -57.43 REMARK 500 1 SER A 35 74.62 -64.65 REMARK 500 1 GLU A 42 -33.28 -36.82 REMARK 500 1 ARG A 47 -71.74 -59.52 REMARK 500 1 LEU A 52 -79.72 -36.65 REMARK 500 1 ALA A 53 -35.32 -38.85 REMARK 500 1 ASN A 58 58.37 -157.86 REMARK 500 1 PRO A 59 -154.22 -64.99 REMARK 500 1 ALA A 60 -56.04 67.30 REMARK 500 1 ASP A 61 -163.57 -104.66 REMARK 500 2 THR A 5 -166.44 -171.30 REMARK 500 2 LEU A 27 -163.13 -112.41 REMARK 500 2 THR A 28 156.86 177.08 REMARK 500 2 HIS A 32 -167.63 -162.73 REMARK 500 2 SER A 35 80.96 -63.72 REMARK 500 2 GLU A 42 -31.73 -35.47 REMARK 500 2 ARG A 47 -71.55 -60.06 REMARK 500 2 LEU A 52 -82.45 -35.63 REMARK 500 2 ALA A 53 -35.51 -34.82 REMARK 500 2 ASN A 58 53.00 -152.93 REMARK 500 2 PRO A 59 -110.74 -59.71 REMARK 500 2 ALA A 60 -141.10 42.82 REMARK 500 3 ILE A 4 -64.24 -123.88 REMARK 500 3 LEU A 27 -164.05 -102.58 REMARK 500 3 SER A 35 79.84 -55.18 REMARK 500 3 GLU A 42 -32.81 -38.46 REMARK 500 3 ARG A 47 -70.35 -61.05 REMARK 500 3 LEU A 52 -72.37 -34.39 REMARK 500 3 ASN A 58 48.00 -154.47 REMARK 500 3 PRO A 59 -148.78 -67.23 REMARK 500 3 ALA A 60 -56.31 71.17 REMARK 500 3 LEU A 62 -102.94 -117.07 REMARK 500 4 THR A 5 -162.92 -163.36 REMARK 500 4 LEU A 27 -163.39 -106.00 REMARK 500 4 THR A 28 156.41 175.62 REMARK 500 4 HIS A 32 167.60 173.11 REMARK 500 4 ASN A 33 41.43 -77.04 REMARK 500 4 GLU A 42 -29.56 -36.48 REMARK 500 4 LEU A 52 -81.70 -34.24 REMARK 500 4 ALA A 53 -20.59 -39.30 REMARK 500 4 ASN A 58 51.01 -157.81 REMARK 500 4 PRO A 59 -163.48 -65.01 REMARK 500 4 ALA A 60 -51.12 70.08 REMARK 500 5 THR A 5 -164.82 -169.79 REMARK 500 5 LEU A 27 -164.12 -108.24 REMARK 500 5 THR A 28 159.94 179.76 REMARK 500 5 GLU A 42 -33.94 -34.51 REMARK 500 5 ARG A 47 -72.03 -57.33 REMARK 500 REMARK 500 THIS ENTRY HAS 214 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17720 RELATED DB: BMRB DBREF 2LEP A 1 61 UNP C3SPT7 C3SPT7_ECOLX 1 61 SEQADV 2LEP LEU A 62 UNP C3SPT7 EXPRESSION TAG SEQADV 2LEP ASP A 63 UNP C3SPT7 EXPRESSION TAG SEQADV 2LEP HIS A 64 UNP C3SPT7 EXPRESSION TAG SEQADV 2LEP HIS A 65 UNP C3SPT7 EXPRESSION TAG SEQADV 2LEP HIS A 66 UNP C3SPT7 EXPRESSION TAG SEQADV 2LEP HIS A 67 UNP C3SPT7 EXPRESSION TAG SEQADV 2LEP HIS A 68 UNP C3SPT7 EXPRESSION TAG SEQADV 2LEP HIS A 69 UNP C3SPT7 EXPRESSION TAG SEQRES 1 A 69 MET LEU MET ILE THR SER PHE ALA ASN PRO ARG VAL ALA SEQRES 2 A 69 GLN ALA PHE VAL ASP TYR MET ALA THR GLN GLY VAL ILE SEQRES 3 A 69 LEU THR ILE GLN GLN HIS ASN GLN SER ASP VAL TRP LEU SEQRES 4 A 69 ALA ASP GLU SER GLN ALA GLU ARG VAL ARG ALA GLU LEU SEQRES 5 A 69 ALA ARG PHE LEU GLU ASN PRO ALA ASP LEU ASP HIS HIS SEQRES 6 A 69 HIS HIS HIS HIS HELIX 1 1 ASN A 9 GLN A 23 1 15 HELIX 2 2 ASP A 41 SER A 43 5 3 HELIX 3 3 GLN A 44 ASN A 58 1 15 SHEET 1 A 3 LEU A 2 PHE A 7 0 SHEET 2 A 3 SER A 35 LEU A 39 -1 O VAL A 37 N THR A 5 SHEET 3 A 3 LEU A 27 GLN A 30 -1 N GLN A 30 O ASP A 36 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1