HEADER TRANSCRIPTION 28-JUN-11 2LF7 TITLE INTRAMOLECULAR REGULATION OF THE ETS DOMAIN WITHIN ETV6 SEQUENCE R335 TITLE 2 TO Q436 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR ETV6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ETS DNA BINDING DOMAIN RESIDUES 335-436; COMPND 5 SYNONYM: ETS TRANSLOCATION VARIANT 6, ETS-RELATED PROTEIN TEL1, TEL; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ETV6, MOUSE ETV6, TEL, TEL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28B+ KEYWDS AUTO-INHIBITION, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.COYNE III,S.M.GREEN,B.J.GRAVES,L.P.MCINTOSH REVDAT 4 15-MAY-24 2LF7 1 REMARK REVDAT 3 14-JUN-23 2LF7 1 REMARK SEQADV REVDAT 2 25-JUL-12 2LF7 1 JRNL REVDAT 1 23-MAY-12 2LF7 0 JRNL AUTH H.J.COYNE,S.DE,M.OKON,S.M.GREEN,N.BHACHECH,B.J.GRAVES, JRNL AUTH 2 L.P.MCINTOSH JRNL TITL AUTOINHIBITION OF ETV6 (TEL) DNA BINDING: APPENDED HELICES JRNL TITL 2 STERICALLY BLOCK THE ETS DOMAIN. JRNL REF J.MOL.BIOL. V. 421 67 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22584210 JRNL DOI 10.1016/J.JMB.2012.05.010 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3, ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ITERATION PROTOCOL USED DEFAULT VALUES REMARK 3 EXCEPT ITERATION6 HAD THE VIOLATION TOLERANCE 0.09 VIOLATION REMARK 3 THRESHOLD 0.5 AND MAX_CONTRIBUTION 15, ITERATION7 SET THE REMARK 3 VIOLATION THRESHOLD 0.07 VIOLATION THRESHOLD 0.4 MAX_ REMARK 3 CONTRIBUTIONS 10. ITERATION 8 SET THE VIOLATION TOLERANCE 0.05 REMARK 3 VIOLATION THRESHOLD 0.3 MAX_CONTRIBUTIONS 5. THE CHEMICAL SHIFT REMARK 3 TOLERANCES WERE SET TO PROTON1=0.03 HETERO1=0.4 PROTON2=0.3 AND REMARK 3 HETERO2= 0.4. VIOLATED RESTRAINTS USED IN THE CALCUATION WERE REMARK 3 EXAMINED MANUALLY FOR CORRECT IDENTIFICATION AS WERE RESTRAINTS REMARK 3 NOT USED IN THE CALCULATION OVER 3 ANGSTROMS. LONG, MEDIUM, AND REMARK 3 SHORT NOES NOT USED IN THE CALCUALTION WERE EXAMINED ON REMARK 3 REFINEMENT AS WERE AMBIGOUS ASSIGMENTS WITH 3 OR MORE REMARK 3 CONTRIBUTIONS. REMARK 4 REMARK 4 2LF7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000102318. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : 0.250 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM PHOSPHATE, 200 MM REMARK 210 SODIUM CHLORIDE, 0.6 MM [U-99% REMARK 210 13C; U-99% 15N] PROTEIN, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-13C NOESY; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D HCCH- REMARK 210 TOCSY; 3D HN(CO)CA; 3D HNCO; 3D REMARK 210 HBHA(CO)NH; DIPSI3DN; CMETHYL REMARK 210 NOESY; NMETHYL NOESY; REMARK 210 CCCTOCSYNNH; 2D 1H-13C HSQC REMARK 210 ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TALOS+, SPARKY, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 405 OE2 GLU A 406 1.54 REMARK 500 HE ARG A 382 OXT GLN A 436 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 402 -65.96 -107.56 REMARK 500 1 ARG A 410 -72.74 -86.17 REMARK 500 1 SER A 424 38.20 -87.96 REMARK 500 2 MET A 334 93.96 -65.17 REMARK 500 2 LEU A 336 -179.05 -69.88 REMARK 500 2 ILE A 402 -65.13 -105.88 REMARK 500 2 SER A 424 37.33 -85.60 REMARK 500 3 HIS A 333 -53.92 69.40 REMARK 500 3 LEU A 336 -178.13 -65.73 REMARK 500 3 ILE A 402 -68.27 -108.29 REMARK 500 3 ARG A 410 -70.16 -111.55 REMARK 500 4 SER A 332 47.16 -85.93 REMARK 500 4 LEU A 336 -175.20 -67.08 REMARK 500 4 ILE A 402 -65.43 -101.10 REMARK 500 4 SER A 424 31.42 -80.50 REMARK 500 5 ILE A 402 -66.31 -107.07 REMARK 500 5 SER A 424 38.07 -94.73 REMARK 500 6 ASN A 384 32.61 -88.25 REMARK 500 6 ILE A 402 -65.23 -106.77 REMARK 500 6 ARG A 410 -72.10 -106.44 REMARK 500 6 SER A 424 36.55 -86.74 REMARK 500 7 HIS A 333 114.00 65.34 REMARK 500 7 ASN A 384 47.72 -88.27 REMARK 500 7 ILE A 402 -65.62 -97.14 REMARK 500 7 ARG A 410 -76.20 -103.73 REMARK 500 8 HIS A 333 -37.23 -154.02 REMARK 500 8 MET A 334 -83.88 60.91 REMARK 500 8 ILE A 402 -67.95 -109.08 REMARK 500 8 SER A 424 36.44 -82.98 REMARK 500 9 LEU A 336 -178.03 -67.13 REMARK 500 9 ASN A 384 48.12 -93.08 REMARK 500 9 ILE A 402 -63.32 -100.32 REMARK 500 9 GLU A 431 -15.13 -49.45 REMARK 500 10 ILE A 402 -66.02 -106.11 REMARK 500 10 ARG A 410 -61.46 -97.34 REMARK 500 11 SER A 332 -94.07 64.58 REMARK 500 11 MET A 334 56.93 -91.90 REMARK 500 11 ILE A 402 -62.50 -105.49 REMARK 500 11 ARG A 410 -74.51 -108.08 REMARK 500 11 SER A 424 38.67 -84.65 REMARK 500 12 ASN A 384 34.64 -89.77 REMARK 500 12 ILE A 402 -70.01 -103.19 REMARK 500 12 ARG A 410 -76.60 -102.50 REMARK 500 12 SER A 424 38.81 -79.34 REMARK 500 13 SER A 332 -22.55 -161.97 REMARK 500 13 MET A 334 45.62 -105.20 REMARK 500 13 ASN A 384 41.67 -93.06 REMARK 500 13 ILE A 402 -67.42 -108.07 REMARK 500 14 HIS A 333 -91.38 61.46 REMARK 500 14 LEU A 336 -177.76 -69.31 REMARK 500 REMARK 500 THIS ENTRY HAS 74 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17741 RELATED DB: BMRB REMARK 900 RELATED ID: 2LF8 RELATED DB: PDB DBREF 2LF7 A 335 436 UNP P97360 ETV6_MOUSE 335 436 SEQADV 2LF7 GLY A 331 UNP P97360 EXPRESSION TAG SEQADV 2LF7 SER A 332 UNP P97360 EXPRESSION TAG SEQADV 2LF7 HIS A 333 UNP P97360 EXPRESSION TAG SEQADV 2LF7 MET A 334 UNP P97360 EXPRESSION TAG SEQRES 1 A 106 GLY SER HIS MET ARG LEU LEU TRP ASP TYR VAL TYR GLN SEQRES 2 A 106 LEU LEU SER ASP SER ARG TYR GLU ASN PHE ILE ARG TRP SEQRES 3 A 106 GLU ASP LYS GLU SER LYS ILE PHE ARG ILE VAL ASP PRO SEQRES 4 A 106 ASN GLY LEU ALA ARG LEU TRP GLY ASN HIS LYS ASN ARG SEQRES 5 A 106 THR ASN MET THR TYR GLU LYS MET SER ARG ALA LEU ARG SEQRES 6 A 106 HIS TYR TYR LYS LEU ASN ILE ILE ARG LYS GLU PRO GLY SEQRES 7 A 106 GLN ARG LEU LEU PHE ARG PHE MET LYS THR PRO ASP GLU SEQRES 8 A 106 ILE MET SER GLY ARG THR ASP ARG LEU GLU HIS LEU GLU SEQRES 9 A 106 SER GLN HELIX 1 1 LEU A 336 SER A 346 1 11 HELIX 2 2 ASP A 347 GLU A 351 5 5 HELIX 3 3 LYS A 359 SER A 361 5 3 HELIX 4 4 ASP A 368 ASN A 381 1 14 HELIX 5 5 THR A 386 LEU A 400 1 15 HELIX 6 6 THR A 418 MET A 423 1 6 HELIX 7 7 ARG A 429 GLU A 434 1 6 SHEET 1 A 4 ARG A 355 ASP A 358 0 SHEET 2 A 4 ILE A 363 ARG A 365 -1 O ILE A 363 N ASP A 358 SHEET 3 A 4 LEU A 412 PHE A 415 -1 O PHE A 413 N PHE A 364 SHEET 4 A 4 ILE A 403 LYS A 405 -1 N ARG A 404 O ARG A 414 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1