HEADER HYDROLASE 25-JUL-11 2LGD TITLE THE HIGH RESOLUTION STRUCTURE OF UBIQUITIN LIKE DOMAIN OF UBLCP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (UNP RESIDUES 1-81); COMPND 5 EC: 3.1.3.16; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBLCP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX 4T-1 KEYWDS UBIQUITIN LIKE DOMAIN, UBLCP1, RNA POLYMERASE II, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 MDLTYP MINIMIZED AVERAGE AUTHOR W.LEE,S.KO REVDAT 2 14-JUN-23 2LGD 1 REMARK SEQADV REVDAT 1 29-AUG-12 2LGD 0 JRNL AUTH N.LEE,S.KO JRNL TITL THE HIGH RESOLUTION STRUCTURE OF UBIQUITIN LIKE DOM UBLCP1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOASSIGN, PROCHECKNMR, CYANA 2.2.5 REMARK 3 AUTHORS : ZIMMERMAN, MOSELEY, KULIKOWSKI AND MONTELIONE REMARK 3 (AUTOASSIGN), LASKOWSKI AND MACARTHUR (PROCHECKNMR) REMARK 3 , P.GUNTERT ET AL. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LGD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000102359. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-99% 15N] UBIQUITIN REMARK 210 -LIKE DOMAIN-CONTAINING CTD REMARK 210 PHOSPHATASE 1-1, 90% H2O/10% D2O; REMARK 210 1.5 MM [U-95% 13C] UBIQUITIN- REMARK 210 LIKE DOMAIN-CONTAINING CTD REMARK 210 PHOSPHATASE 1-2, 100% D2O; 1.5 REMARK 210 MM [U-95% 13C; U-95% 15N] REMARK 210 UBIQUITIN-LIKE DOMAIN-CONTAINING REMARK 210 CTD PHOSPHATASE 1-3, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D 1 REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : MOLMOL_NMRDRAW, NMRPIPE, SPARKY, REMARK 210 XWINNMR, TALOS, CYANA 2.2.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 17 48.14 -155.71 REMARK 500 1 THR A 18 -34.46 -130.88 REMARK 500 1 ASP A 23 -74.36 -82.83 REMARK 500 1 THR A 24 149.36 176.19 REMARK 500 1 PRO A 54 64.75 -69.81 REMARK 500 1 ALA A 55 84.61 49.29 REMARK 500 1 GLU A 56 172.47 -52.35 REMARK 500 1 LYS A 65 -85.53 -48.71 REMARK 500 1 LEU A 66 -172.26 175.91 REMARK 500 2 THR A 17 43.24 -152.19 REMARK 500 2 ASP A 23 -78.53 -74.61 REMARK 500 2 THR A 24 148.58 178.43 REMARK 500 2 PRO A 54 64.57 -69.80 REMARK 500 2 ALA A 55 84.47 49.09 REMARK 500 2 GLU A 56 177.25 -54.77 REMARK 500 2 LYS A 65 -84.71 -47.60 REMARK 500 2 LEU A 66 -173.05 175.71 REMARK 500 3 THR A 17 44.96 -155.69 REMARK 500 3 ASP A 23 -74.21 -80.94 REMARK 500 3 THR A 24 151.09 175.33 REMARK 500 3 PRO A 54 64.65 -69.83 REMARK 500 3 ALA A 55 88.26 50.67 REMARK 500 3 LYS A 65 -86.19 -49.91 REMARK 500 3 LEU A 66 -172.84 176.34 REMARK 500 3 GLU A 79 170.12 -57.21 REMARK 500 4 THR A 17 52.29 -156.75 REMARK 500 4 THR A 18 -37.64 -135.58 REMARK 500 4 LEU A 19 -168.71 -126.47 REMARK 500 4 ASP A 23 -75.10 -82.09 REMARK 500 4 THR A 24 148.35 176.42 REMARK 500 4 PRO A 54 64.53 -69.78 REMARK 500 4 ALA A 55 80.10 49.37 REMARK 500 4 LYS A 65 -85.04 -49.29 REMARK 500 4 LEU A 66 -172.71 175.65 REMARK 500 5 THR A 17 48.03 -152.26 REMARK 500 5 THR A 18 -36.43 -130.35 REMARK 500 5 ASP A 23 -78.41 -75.99 REMARK 500 5 THR A 24 147.86 177.97 REMARK 500 5 PRO A 54 64.43 -69.80 REMARK 500 5 ALA A 55 85.05 49.02 REMARK 500 5 GLU A 56 172.39 -52.06 REMARK 500 5 LYS A 65 -85.51 -48.94 REMARK 500 5 LEU A 66 -171.90 175.08 REMARK 500 6 THR A 17 50.26 -157.20 REMARK 500 6 THR A 18 -35.91 -132.07 REMARK 500 6 ASP A 23 -74.89 -80.22 REMARK 500 6 THR A 24 149.08 176.44 REMARK 500 6 PRO A 54 64.52 -69.80 REMARK 500 6 ALA A 55 82.51 48.16 REMARK 500 6 LYS A 65 -84.96 -49.37 REMARK 500 REMARK 500 THIS ENTRY HAS 175 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17805 RELATED DB: BMRB DBREF 2LGD A 1 81 UNP Q8WVY7 UBCP1_HUMAN 1 81 SEQADV 2LGD GLY A -1 UNP Q8WVY7 EXPRESSION TAG SEQADV 2LGD SER A 0 UNP Q8WVY7 EXPRESSION TAG SEQRES 1 A 83 GLY SER MET ALA LEU PRO ILE ILE VAL LYS TRP GLY GLY SEQRES 2 A 83 GLN GLU TYR SER VAL THR THR LEU SER GLU ASP ASP THR SEQRES 3 A 83 VAL LEU ASP LEU LYS GLN PHE LEU LYS THR LEU THR GLY SEQRES 4 A 83 VAL LEU PRO GLU ARG GLN LYS LEU LEU GLY LEU LYS VAL SEQRES 5 A 83 LYS GLY LYS PRO ALA GLU ASN ASP VAL LYS LEU GLY ALA SEQRES 6 A 83 LEU LYS LEU LYS PRO ASN THR LYS ILE MET MET MET GLY SEQRES 7 A 83 THR ARG GLU GLU SER HELIX 1 1 THR A 24 GLY A 37 1 14 HELIX 2 2 LYS A 60 LYS A 65 1 6 SHEET 1 A 4 GLN A 12 VAL A 16 0 SHEET 2 A 4 ILE A 5 TRP A 9 -1 N VAL A 7 O TYR A 14 SHEET 3 A 4 LYS A 71 MET A 75 1 O ILE A 72 N ILE A 6 SHEET 4 A 4 LYS A 44 LEU A 45 -1 N LYS A 44 O MET A 75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1