HEADER LIGASE 28-JUL-11 2LGL TITLE NMR STRUCTURE OF THE UHRF1 PHD DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UHRF1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHD DOMAIN (UNP RESIDUES 298-366); COMPND 5 SYNONYM: INVERTED CCAAT BOX-BINDING PROTEIN OF 90 KDA, NUCLEAR COMPND 6 PROTEIN 95, NUCLEAR ZINC FINGER PROTEIN NP95, HUNP95, RING FINGER COMPND 7 PROTEIN 106, TRANSCRIPTION FACTOR ICBP90, UBIQUITIN-LIKE PHD AND RING COMPND 8 FINGER DOMAIN-CONTAINING PROTEIN 1, UBIQUITIN-LIKE-CONTAINING PHD AND COMPND 9 RING FINGER DOMAINS PROTEIN 1; COMPND 10 EC: 6.3.2.-; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PETDUET KEYWDS UHRF1 PHD DOMAIN, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.WANG,J.SHEN,Z.YANG,P.CHEN,B.ZHAO,W.HU,W.LAN,X.TONG,H.WU,G.LI,C.CAO REVDAT 3 15-MAY-24 2LGL 1 REMARK REVDAT 2 14-JUN-23 2LGL 1 REMARK LINK REVDAT 1 28-SEP-11 2LGL 0 JRNL AUTH C.WANG,J.SHEN,Z.YANG,P.CHEN,B.ZHAO,W.HU,W.LAN,X.TONG,H.WU, JRNL AUTH 2 G.LI,C.CAO JRNL TITL STRUCTURAL BASIS FOR SITE-SPECIFIC READING OF UNMODIFIED R2 JRNL TITL 2 OF HISTONE H3 TAIL BY UHRF1 PHD FINGER. JRNL REF CELL RES. V. 21 1379 2011 JRNL REFN ISSN 1001-0602 JRNL PMID 21808299 JRNL DOI 10.1038/CR.2011.123 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LGL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000102367. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293.15 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-100% 13C; U-100% 15N] REMARK 210 ENTITY_1-1, 137 MM SODIUM REMARK 210 CHLORIDE-2, 10 MM POTASSIUM REMARK 210 PHOSPHATE-3, 3 MM DTT-4, 2.7 MM REMARK 210 POTASSIUM CHLORIDE-5, 0.1 MM REMARK 210 SODIUM AZIDE-6, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 342 HH TYR A 356 1.24 REMARK 500 O CYS A 326 H ALA A 330 1.54 REMARK 500 O CYS A 346 H ASP A 350 1.58 REMARK 500 O CYS A 331 H GLY A 335 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 316 -69.18 -98.09 REMARK 500 1 CYS A 326 52.53 -106.27 REMARK 500 1 ILE A 355 -36.30 -35.69 REMARK 500 1 SER A 363 -25.66 81.77 REMARK 500 1 VAL A 365 83.05 31.95 REMARK 500 1 SER A 367 -29.17 69.24 REMARK 500 1 ASP A 369 -2.51 56.58 REMARK 500 2 ASP A 321 -148.03 -99.65 REMARK 500 2 ASN A 323 -3.39 82.87 REMARK 500 2 ARG A 327 -74.45 55.99 REMARK 500 2 GLN A 338 -129.90 -78.21 REMARK 500 2 ILE A 355 -30.76 -38.77 REMARK 500 2 SER A 363 6.16 47.73 REMARK 500 2 VAL A 365 78.58 43.33 REMARK 500 2 ASP A 369 -49.93 -175.19 REMARK 500 2 TRP A 371 144.35 171.32 REMARK 500 3 ASN A 323 25.12 -173.08 REMARK 500 3 CYS A 326 57.67 -68.61 REMARK 500 3 VAL A 328 -71.59 -82.96 REMARK 500 3 LEU A 333 -73.46 -82.61 REMARK 500 3 GLN A 338 -123.92 41.48 REMARK 500 3 LEU A 362 -94.23 -39.44 REMARK 500 3 SER A 363 -23.65 68.79 REMARK 500 3 VAL A 365 66.68 22.96 REMARK 500 3 ASP A 369 -25.67 -177.47 REMARK 500 4 CYS A 326 27.27 -73.24 REMARK 500 4 GLN A 338 -80.45 -36.82 REMARK 500 4 SER A 363 -5.17 50.13 REMARK 500 4 VAL A 365 79.88 54.12 REMARK 500 4 ASP A 369 -37.73 -175.59 REMARK 500 4 TRP A 371 139.32 162.79 REMARK 500 5 ASP A 321 -9.83 155.59 REMARK 500 5 ARG A 324 -112.26 -134.16 REMARK 500 5 ARG A 327 -72.43 56.18 REMARK 500 5 LEU A 333 -78.34 -172.06 REMARK 500 5 ARG A 337 4.39 55.80 REMARK 500 5 ILE A 355 -30.39 -34.77 REMARK 500 5 LEU A 358 158.81 -45.79 REMARK 500 5 SER A 363 6.07 48.23 REMARK 500 5 PRO A 366 -13.71 -44.44 REMARK 500 5 ASP A 369 -32.55 -177.33 REMARK 500 6 HIS A 317 -70.99 -107.95 REMARK 500 6 LEU A 333 -69.17 176.58 REMARK 500 6 GLN A 338 -91.54 -38.72 REMARK 500 6 SER A 363 -15.58 58.43 REMARK 500 6 VAL A 365 85.06 44.22 REMARK 500 6 ASP A 369 -43.12 -175.84 REMARK 500 6 TRP A 371 157.47 167.13 REMARK 500 7 ASP A 320 -79.87 -93.33 REMARK 500 7 ARG A 324 -27.14 -36.03 REMARK 500 REMARK 500 THIS ENTRY HAS 146 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 380 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 315 SG REMARK 620 2 CYS A 318 SG 101.9 REMARK 620 3 CYS A 326 SG 110.9 108.4 REMARK 620 4 CYS A 329 SG 111.9 111.3 111.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 381 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 331 SG REMARK 620 2 CYS A 334 SG 109.3 REMARK 620 3 HIS A 354 NE2 107.6 108.8 REMARK 620 4 CYS A 357 SG 115.5 108.9 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 382 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 346 SG REMARK 620 2 CYS A 349 SG 109.8 REMARK 620 3 CYS A 373 SG 116.9 106.2 REMARK 620 4 CYS A 376 SG 108.9 107.1 107.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 381 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 382 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17813 RELATED DB: BMRB REMARK 900 RELATED ID: 2LGG RELATED DB: PDB REMARK 900 RELATED ID: 2LGK RELATED DB: PDB DBREF 2LGL A 311 379 UNP Q96T88 UHRF1_HUMAN 298 366 SEQRES 1 A 69 SER GLY PRO SER CYS LYS HIS CYS LYS ASP ASP VAL ASN SEQRES 2 A 69 ARG LEU CYS ARG VAL CYS ALA CYS HIS LEU CYS GLY GLY SEQRES 3 A 69 ARG GLN ASP PRO ASP LYS GLN LEU MET CYS ASP GLU CYS SEQRES 4 A 69 ASP MET ALA PHE HIS ILE TYR CYS LEU ASP PRO PRO LEU SEQRES 5 A 69 SER SER VAL PRO SER GLU ASP GLU TRP TYR CYS PRO GLU SEQRES 6 A 69 CYS ARG ASN ASP HET ZN A 380 1 HET ZN A 381 1 HET ZN A 382 1 HETNAM ZN ZINC ION FORMUL 2 ZN 3(ZN 2+) HELIX 1 1 LYS A 316 ASP A 321 1 6 HELIX 2 2 ASP A 339 GLN A 343 5 5 HELIX 3 3 CYS A 373 ASN A 378 1 6 LINK SG CYS A 315 ZN ZN A 380 1555 1555 2.30 LINK SG CYS A 318 ZN ZN A 380 1555 1555 2.29 LINK SG CYS A 326 ZN ZN A 380 1555 1555 2.30 LINK SG CYS A 329 ZN ZN A 380 1555 1555 2.31 LINK SG CYS A 331 ZN ZN A 381 1555 1555 2.31 LINK SG CYS A 334 ZN ZN A 381 1555 1555 2.30 LINK SG CYS A 346 ZN ZN A 382 1555 1555 2.31 LINK SG CYS A 349 ZN ZN A 382 1555 1555 2.30 LINK NE2 HIS A 354 ZN ZN A 381 1555 1555 2.00 LINK SG CYS A 357 ZN ZN A 381 1555 1555 2.31 LINK SG CYS A 373 ZN ZN A 382 1555 1555 2.30 LINK SG CYS A 376 ZN ZN A 382 1555 1555 2.30 SITE 1 AC1 4 CYS A 315 CYS A 318 CYS A 326 CYS A 329 SITE 1 AC2 5 CYS A 331 CYS A 334 GLN A 338 HIS A 354 SITE 2 AC2 5 CYS A 357 SITE 1 AC3 4 CYS A 346 CYS A 349 CYS A 373 CYS A 376 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1