HEADER HYDROLASE 02-SEP-11 2LIZ TITLE NMR SOLUTION STRUCTURE OF C-TERMINAL DOMAIN OF SARS-COV MAIN PROTEASE TITLE 2 IN 2.5M UREA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 3427-3546; COMPND 5 SYNONYM: 3CL-PRO, 3CLP, NSP5; COMPND 6 EC: 3.4.22.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SARS CORONAVIRUS; SOURCE 3 ORGANISM_COMMON: SARS-COV; SOURCE 4 ORGANISM_TAXID: 227859; SOURCE 5 GENE: 1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21A KEYWDS MPRO-C SARS-COV, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.XIA,X.KANG REVDAT 3 20-NOV-24 2LIZ 1 JRNL REVDAT 2 01-MAY-24 2LIZ 1 REMARK REVDAT 1 05-SEP-12 2LIZ 0 JRNL AUTH X.KANG,N.ZHONG,P.ZOU,S.ZHANG,C.JIN,B.XIA JRNL TITL FOLDON UNFOLDING MEDIATES THE INTERCONVERSION BETWEEN JRNL TITL 2 M(PRO)-C MONOMER AND 3D DOMAIN-SWAPPED DIMER. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 14900 2012 JRNL REFN ESSN 1091-6490 JRNL PMID 22927388 JRNL DOI 10.1073/PNAS.1205241109 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, KOLLM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LIZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000102439. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N] ENTITY-1, 1 MM REMARK 210 [U-100% 13C; U-100% 15N] ENTITY- REMARK 210 2, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, SANE, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 298 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG A 298 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 7 ARG A 298 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 8 ARG A 298 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 11 ARG A 298 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 14 ARG A 222 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 18 ARG A 298 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 18 ARG A 298 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 190 27.14 46.86 REMARK 500 1 GLN A 192 -47.44 61.81 REMARK 500 1 ARG A 217 18.53 -147.62 REMARK 500 1 THR A 224 172.82 59.91 REMARK 500 1 MET A 276 12.34 -147.94 REMARK 500 1 LEU A 282 31.74 -154.26 REMARK 500 1 ARG A 298 170.80 -59.55 REMARK 500 1 GLN A 299 43.06 -72.29 REMARK 500 1 CYS A 300 34.66 -73.84 REMARK 500 1 PHE A 305 -32.52 -132.28 REMARK 500 2 ARG A 222 24.40 -78.87 REMARK 500 2 ASN A 274 -26.20 -145.50 REMARK 500 2 LEU A 282 27.16 49.70 REMARK 500 2 PHE A 294 149.29 66.18 REMARK 500 2 ASP A 295 28.67 47.30 REMARK 500 3 ARG A 222 7.75 56.75 REMARK 500 3 ASN A 238 8.10 59.35 REMARK 500 3 LEU A 282 46.63 -150.41 REMARK 500 3 GLN A 299 37.50 -93.02 REMARK 500 3 CYS A 300 -47.04 -29.06 REMARK 500 4 ASP A 197 31.37 -74.14 REMARK 500 4 THR A 198 -173.39 57.39 REMARK 500 4 ASN A 238 17.31 57.77 REMARK 500 4 ASN A 274 -30.04 -156.34 REMARK 500 4 LEU A 282 29.29 48.49 REMARK 500 4 PHE A 294 -66.39 65.88 REMARK 500 4 VAL A 296 16.66 -141.34 REMARK 500 4 ARG A 298 -31.01 62.18 REMARK 500 4 VAL A 303 -3.16 51.89 REMARK 500 5 ARG A 188 -177.44 56.30 REMARK 500 5 GLN A 189 -26.38 63.69 REMARK 500 5 PRO A 252 6.02 -64.75 REMARK 500 5 GLN A 273 -30.88 -131.21 REMARK 500 5 ASN A 274 -21.38 -152.05 REMARK 500 5 LEU A 282 29.44 49.87 REMARK 500 5 PRO A 293 -167.85 -78.98 REMARK 500 5 PHE A 294 -58.13 72.99 REMARK 500 5 VAL A 297 -34.52 -140.74 REMARK 500 5 ARG A 298 -3.41 54.96 REMARK 500 5 SER A 301 23.40 -142.53 REMARK 500 5 THR A 304 -35.88 -148.13 REMARK 500 6 ARG A 217 16.48 -146.94 REMARK 500 6 ARG A 222 29.44 -73.91 REMARK 500 6 MET A 276 12.26 59.51 REMARK 500 6 PHE A 294 23.91 43.43 REMARK 500 6 PHE A 305 -38.56 -130.36 REMARK 500 7 ALA A 193 26.93 -142.91 REMARK 500 7 THR A 198 142.80 59.48 REMARK 500 7 ASP A 216 26.41 -77.51 REMARK 500 7 ARG A 217 3.74 -59.84 REMARK 500 REMARK 500 THIS ENTRY HAS 134 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17911 RELATED DB: BMRB DBREF 2LIZ A 187 306 UNP P0C6U8 R1A_CVHSA 3427 3546 SEQRES 1 A 120 ASP ARG GLN THR ALA GLN ALA ALA GLY THR ASP THR THR SEQRES 2 A 120 ILE THR LEU ASN VAL LEU ALA TRP LEU TYR ALA ALA VAL SEQRES 3 A 120 ILE ASN GLY ASP ARG TRP PHE LEU ASN ARG PHE THR THR SEQRES 4 A 120 THR LEU ASN ASP PHE ASN LEU VAL ALA MET LYS TYR ASN SEQRES 5 A 120 TYR GLU PRO LEU THR GLN ASP HIS VAL ASP ILE LEU GLY SEQRES 6 A 120 PRO LEU SER ALA GLN THR GLY ILE ALA VAL LEU ASP MET SEQRES 7 A 120 CYS ALA ALA LEU LYS GLU LEU LEU GLN ASN GLY MET ASN SEQRES 8 A 120 GLY ARG THR ILE LEU GLY SER THR ILE LEU GLU ASP GLU SEQRES 9 A 120 PHE THR PRO PHE ASP VAL VAL ARG GLN CYS SER GLY VAL SEQRES 10 A 120 THR PHE GLN HELIX 1 1 ILE A 200 GLY A 215 1 16 HELIX 2 2 THR A 226 TYR A 237 1 12 HELIX 3 3 THR A 243 GLY A 258 1 16 HELIX 4 4 ALA A 260 GLY A 275 1 16 HELIX 5 5 PHE A 294 ARG A 298 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1