HEADER ISOMERASE 06-SEP-11 2LJ4 TITLE SOLUTION STRUCTURE OF THE TBPIN1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE/ROTAMASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROLYL CIS/TRANS ISOMERASE TBPIN1; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 GENE: TBPIN1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS TBPIN1, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.SUN,D.LIN,Y.ZHAO REVDAT 4 15-MAY-24 2LJ4 1 REMARK REVDAT 3 14-JUN-23 2LJ4 1 REMARK REVDAT 2 25-DEC-19 2LJ4 1 JRNL REVDAT 1 22-AUG-12 2LJ4 0 JRNL AUTH L.SUN,X.WU,Y.PENG,J.Y.GOH,Y.-C.LIOU,D.LIN,Y.ZHAO JRNL TITL SOLUTION STRUCTURAL ANALYSIS OF THE SINGLE-DOMAIN PARVULIN JRNL TITL 2 TBPIN1. JRNL REF PLOS ONE V. 7 43017 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22900083 JRNL DOI 10.1371/JOURNAL.PONE.0043017 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.SUN,X.WU,Y.PENG,J.Y.GOH,T.-C.LIOU,D.LIN,Y.ZHAO REMARK 1 TITL SOLUTION STRUCTURAL ANALYSIS OF THE SINGLE-DOMAIN PARVULIN REMARK 1 TITL 2 TBPIN1 REMARK 1 REF PLOS ONE V. 7 43017 2012 REMARK 1 REFN ESSN 1932-6203 REMARK 1 DOI 10.1371/JOURNAL.PONE.0043017.G001 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LJ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000102444. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 10132 5 REMARK 210 SAMPLE CONTENTS : 0.8-1.0 MM [U-99% 13C; U-99% REMARK 210 15N] PROLYL CIS/TRANS ISOMERASE REMARK 210 TBPIN1-1, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HNCO; 3D HCACO; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 3D 1H- REMARK 210 15N TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 C(CO)NH; 3D HCCH-TOCSY; 3D CCH- REMARK 210 TOCSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 16 OD2 ASP A 67 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 8 TYR A 37 CE1 TYR A 37 CZ 0.095 REMARK 500 8 TYR A 37 CZ TYR A 37 CE2 -0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 89.25 63.86 REMARK 500 1 SER A 20 46.84 -90.83 REMARK 500 1 ARG A 21 -35.55 70.87 REMARK 500 1 ASP A 30 -67.98 -94.27 REMARK 500 1 MET A 85 -144.97 -107.94 REMARK 500 1 ILE A 104 107.95 -43.10 REMARK 500 2 ARG A 21 -20.04 72.50 REMARK 500 2 ASP A 30 -71.36 -115.93 REMARK 500 2 GLU A 84 46.71 -83.55 REMARK 500 2 MET A 85 -122.59 -137.68 REMARK 500 2 ILE A 104 113.34 -39.48 REMARK 500 2 SER A 109 -61.37 -91.51 REMARK 500 3 SER A 5 -80.37 -144.83 REMARK 500 3 SER A 20 37.21 -77.44 REMARK 500 3 ARG A 21 -36.17 68.31 REMARK 500 3 PRO A 23 -151.72 -81.99 REMARK 500 3 VAL A 24 111.17 64.06 REMARK 500 3 ASP A 30 -68.41 -144.79 REMARK 500 3 MET A 85 -122.02 -137.41 REMARK 500 3 SER A 109 -60.53 -100.30 REMARK 500 4 SER A 18 109.50 -53.16 REMARK 500 4 SER A 20 38.76 -84.46 REMARK 500 4 ARG A 21 -34.00 72.86 REMARK 500 4 ASP A 30 -65.59 -91.72 REMARK 500 4 GLU A 84 34.27 -91.21 REMARK 500 4 MET A 85 -123.16 -131.05 REMARK 500 4 ILE A 98 118.09 -38.05 REMARK 500 4 ILE A 104 109.86 -39.86 REMARK 500 5 SER A 5 -75.96 -55.04 REMARK 500 5 SER A 18 109.51 -54.13 REMARK 500 5 SER A 20 40.17 -90.12 REMARK 500 5 ARG A 21 -34.20 75.38 REMARK 500 5 ASP A 30 -139.18 -107.45 REMARK 500 5 MET A 85 -105.44 -99.06 REMARK 500 5 ILE A 104 108.28 -44.62 REMARK 500 6 GLU A 6 -17.59 -147.46 REMARK 500 6 SER A 20 45.59 -88.68 REMARK 500 6 ARG A 21 -32.50 75.80 REMARK 500 6 ASP A 30 -79.22 -113.78 REMARK 500 6 GLU A 84 48.18 -97.99 REMARK 500 6 MET A 85 -101.22 -135.58 REMARK 500 6 ILE A 104 100.20 -50.11 REMARK 500 6 SER A 109 -60.76 -97.50 REMARK 500 7 SER A 18 109.80 -52.62 REMARK 500 7 SER A 20 48.67 -91.60 REMARK 500 7 ARG A 21 -34.46 71.27 REMARK 500 7 ASP A 30 -70.07 -131.03 REMARK 500 7 MET A 85 -131.78 -122.13 REMARK 500 7 MET A 86 -93.30 -91.97 REMARK 500 7 LYS A 87 -56.43 -163.58 REMARK 500 REMARK 500 THIS ENTRY HAS 143 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17918 RELATED DB: BMRB DBREF 2LJ4 A 4 118 UNP Q57YG1 Q57YG1_9TRYP 1 115 SEQRES 1 A 115 MET SER GLU LYS LEU ARG ALA ALA HIS LEU LEU VAL LYS SEQRES 2 A 115 PHE SER GLY SER ARG ASN PRO VAL SER ARG ARG THR GLY SEQRES 3 A 115 ASP SER THR ALA ASP VAL THR TYR GLU ASP ALA ILE LYS SEQRES 4 A 115 GLU LEU GLN LYS TRP SER GLN ARG ILE ALA SER GLY GLU SEQRES 5 A 115 VAL SER PHE GLU GLU ALA ALA SER GLN ARG SER ASP CYS SEQRES 6 A 115 GLY SER TYR ALA SER GLY GLY ASP LEU GLY PHE PHE SER SEQRES 7 A 115 SER GLY GLU MET MET LYS PRO PHE GLU ASP ALA VAL ARG SEQRES 8 A 115 ALA LEU LYS ILE GLY ASP ILE SER PRO ILE VAL GLN THR SEQRES 9 A 115 ASP SER GLY LEU HIS ILE ILE LYS ARG LEU ALA HELIX 1 1 THR A 36 GLY A 54 1 19 HELIX 2 2 SER A 57 SER A 66 1 10 HELIX 3 3 CYS A 68 SER A 73 5 6 HELIX 4 4 MET A 86 ARG A 94 1 9 SHEET 1 A 4 ASP A 76 SER A 81 0 SHEET 2 A 4 LYS A 7 VAL A 15 -1 N ALA A 10 O LEU A 77 SHEET 3 A 4 LEU A 111 ARG A 116 -1 O LYS A 115 N ALA A 11 SHEET 4 A 4 VAL A 105 GLN A 106 -1 N VAL A 105 O HIS A 112 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1