HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-SEP-11 2LJA TITLE SOLUTION STRUCTURE OF A PUTATIVE THIOL-DISULFIDE OXIDOREDUCTASE FROM TITLE 2 BACTEROIDES VULGATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE THIOL-DISULFIDE OXIDOREDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 309-449; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 STRAIN: ATCC 8482 / DSM 1447 / NCTC 11154; SOURCE 5 GENE: BVU_1977; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, THIOREDOXIN-LIKE, PSI-BIOLOGY, KEYWDS 2 NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, NYSGRC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.HARRIS,R.D.SEIDEL,B.HILLERICH,A.GIZZI,A.KAR,J.LAFLEUR,S.CHAMALA, AUTHOR 2 R.FOTI,G.VILLEGAS,B.EVANS,W.ZENCHECK,M.E.GIRVIN,S.C.ALMO,NEW YORK AUTHOR 3 STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 3 15-MAY-24 2LJA 1 REMARK REVDAT 2 14-JUN-23 2LJA 1 REMARK SEQADV REVDAT 1 05-OCT-11 2LJA 0 JRNL AUTH R.HARRIS,R.D.SEIDEL,B.HILLERICH,A.GIZZI,A.KAR,J.LAFLEUR, JRNL AUTH 2 S.CHAMALA,R.FOTI,G.VILLEGAS,B.EVANS,W.ZENCHECK,M.E.GIRVIN, JRNL AUTH 3 S.C.ALMO JRNL TITL SOLUTION STRUCTURE OF A PUTATIVE THIOL-DISULFIDE JRNL TITL 2 OXIDOREDUCTASE FROM BACTEROIDES VULGATUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT IN A BOX OF WATER REMARK 4 REMARK 4 2LJA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000102450. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PUTATIVE THIOL-DISULFIDE REMARK 210 OXIDOREDUCTASE, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 1 MM DTT, 1 MM EDTA, 10 % [U- REMARK 210 100% 2H] D2O, 0.2 MM DSS, 90% REMARK 210 H2O, 10% D2O; 1 MM [U-100% 13C; REMARK 210 U-100% 15N] PUTATIVE THIOL- REMARK 210 DISULFIDE OXIDOREDUCTASE, 20 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 1 MM DTT, 1 MM EDTA, REMARK 210 100 % [U-100% 2H] D2O, 0.2 MM REMARK 210 DSS, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N HSQC; 15N NOESY-HSQC; 13C REMARK 210 HSQC; AROMATIC 13C HSQC; 13C REMARK 210 NOESY-HSQC; 13C AROMATIC NOESY- REMARK 210 HSQC; HNCO; HNCACO; HNCOCA; REMARK 210 HNCACB; CBCACONH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPN_ANALYSIS 2.1.5, NMRPIPE, REMARK 210 MDDNMR 1.8, MDDGUI 1.0 REMARK 210 METHOD USED : SIMULATING ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 STRUCTURES FOR LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: ALL 3D DATA WERE COLLECTED WITH NON-UNIFORM SAMPLING REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 21 HG23 VAL A 23 1.33 REMARK 500 O MET A 81 H ASP A 85 1.55 REMARK 500 HH12 ARG A 98 OD2 ASP A 102 1.57 REMARK 500 HZ3 LYS A 75 OE1 GLU A 79 1.57 REMARK 500 HZ1 LYS A 76 OE2 GLU A 79 1.57 REMARK 500 OD2 ASP A 118 HZ1 LYS A 120 1.58 REMARK 500 OE2 GLU A 54 HZ2 LYS A 58 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 3 -67.46 73.46 REMARK 500 1 ARG A 4 -38.00 -175.73 REMARK 500 1 SER A 5 -78.35 -89.97 REMARK 500 1 ALA A 10 -34.97 73.76 REMARK 500 1 SER A 12 95.50 68.65 REMARK 500 1 ASP A 63 55.77 -94.77 REMARK 500 1 LEU A 87 39.84 -85.01 REMARK 500 1 MET A 94 -85.30 -76.26 REMARK 500 1 ASP A 97 48.21 -89.97 REMARK 500 1 ARG A 98 20.52 -75.91 REMARK 500 1 ILE A 109 131.04 72.08 REMARK 500 1 MET A 126 -101.30 -99.55 REMARK 500 1 HIS A 147 -40.38 77.20 REMARK 500 1 HIS A 151 103.59 -45.34 REMARK 500 2 ARG A 4 -87.82 68.00 REMARK 500 2 SER A 5 -93.16 40.75 REMARK 500 2 ALA A 10 -40.22 73.94 REMARK 500 2 SER A 12 79.00 68.74 REMARK 500 2 LYS A 62 -136.11 -89.13 REMARK 500 2 LYS A 88 -157.10 -105.51 REMARK 500 2 THR A 96 13.00 -146.94 REMARK 500 2 ASP A 97 31.83 -81.56 REMARK 500 2 ARG A 98 0.03 -67.52 REMARK 500 2 ILE A 106 36.18 -88.93 REMARK 500 2 MET A 126 -86.60 -77.79 REMARK 500 2 THR A 127 -73.01 -155.87 REMARK 500 2 ARG A 128 143.17 -178.35 REMARK 500 2 GLU A 145 154.29 58.50 REMARK 500 3 ARG A 4 28.71 -166.25 REMARK 500 3 SER A 12 103.85 65.01 REMARK 500 3 LYS A 62 -169.86 -104.13 REMARK 500 3 ASP A 63 34.12 -87.91 REMARK 500 3 MET A 126 -127.04 -105.48 REMARK 500 3 PRO A 129 -39.72 -24.40 REMARK 500 4 ARG A 4 -68.75 -138.76 REMARK 500 4 ALA A 10 -44.65 75.76 REMARK 500 4 CYS A 42 -71.33 -86.35 REMARK 500 4 ASP A 63 51.45 -101.28 REMARK 500 4 MET A 94 -72.62 -91.12 REMARK 500 4 ASP A 97 54.91 -92.75 REMARK 500 4 ARG A 98 4.94 -67.71 REMARK 500 4 ASN A 107 -57.65 -127.37 REMARK 500 4 ILE A 121 106.58 -47.05 REMARK 500 4 MET A 126 -166.91 -113.54 REMARK 500 4 LEU A 144 37.45 -97.86 REMARK 500 5 ASN A 7 141.18 68.26 REMARK 500 5 SER A 9 99.62 67.98 REMARK 500 5 ALA A 10 -42.08 73.72 REMARK 500 5 SER A 12 90.47 71.79 REMARK 500 5 CYS A 71 33.24 -91.81 REMARK 500 REMARK 500 THIS ENTRY HAS 224 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-011673 RELATED DB: TARGETDB REMARK 900 RELATED ID: 17927 RELATED DB: BMRB DBREF 2LJA A 4 144 UNP A6L1T5 A6L1T5_BACV8 309 449 SEQADV 2LJA MET A 1 UNP A6L1T5 EXPRESSION TAG SEQADV 2LJA SER A 2 UNP A6L1T5 EXPRESSION TAG SEQADV 2LJA LEU A 3 UNP A6L1T5 EXPRESSION TAG SEQADV 2LJA GLU A 145 UNP A6L1T5 EXPRESSION TAG SEQADV 2LJA GLY A 146 UNP A6L1T5 EXPRESSION TAG SEQADV 2LJA HIS A 147 UNP A6L1T5 EXPRESSION TAG SEQADV 2LJA HIS A 148 UNP A6L1T5 EXPRESSION TAG SEQADV 2LJA HIS A 149 UNP A6L1T5 EXPRESSION TAG SEQADV 2LJA HIS A 150 UNP A6L1T5 EXPRESSION TAG SEQADV 2LJA HIS A 151 UNP A6L1T5 EXPRESSION TAG SEQADV 2LJA HIS A 152 UNP A6L1T5 EXPRESSION TAG SEQRES 1 A 152 MET SER LEU ARG SER GLY ASN PRO SER ALA ALA SER PHE SEQRES 2 A 152 SER TYR PRO ASP ILE ASN GLY LYS THR VAL SER LEU ALA SEQRES 3 A 152 ASP LEU LYS GLY LYS TYR ILE TYR ILE ASP VAL TRP ALA SEQRES 4 A 152 THR TRP CYS GLY PRO CYS ARG GLY GLU LEU PRO ALA LEU SEQRES 5 A 152 LYS GLU LEU GLU GLU LYS TYR ALA GLY LYS ASP ILE HIS SEQRES 6 A 152 PHE VAL SER LEU SER CYS ASP LYS ASN LYS LYS ALA TRP SEQRES 7 A 152 GLU ASN MET VAL THR LYS ASP GLN LEU LYS GLY ILE GLN SEQRES 8 A 152 LEU HIS MET GLY THR ASP ARG THR PHE MET ASP ALA TYR SEQRES 9 A 152 LEU ILE ASN GLY ILE PRO ARG PHE ILE LEU LEU ASP ARG SEQRES 10 A 152 ASP GLY LYS ILE ILE SER ALA ASN MET THR ARG PRO SER SEQRES 11 A 152 ASP PRO LYS THR ALA GLU LYS PHE ASN GLU LEU LEU GLY SEQRES 12 A 152 LEU GLU GLY HIS HIS HIS HIS HIS HIS HELIX 1 1 GLY A 43 GLY A 47 5 5 HELIX 2 2 GLU A 48 TYR A 59 1 12 HELIX 3 3 ASN A 74 GLN A 86 1 13 HELIX 4 4 ARG A 98 TYR A 104 1 7 HELIX 5 5 ASP A 131 GLY A 143 1 13 SHEET 1 A 2 SER A 14 ASP A 17 0 SHEET 2 A 2 LYS A 21 SER A 24 -1 O LYS A 21 N ASP A 17 SHEET 1 B 5 ILE A 90 HIS A 93 0 SHEET 2 B 5 ILE A 64 SER A 70 1 N SER A 68 O LEU A 92 SHEET 3 B 5 TYR A 32 VAL A 37 1 N TYR A 34 O VAL A 67 SHEET 4 B 5 PHE A 112 LEU A 115 -1 O LEU A 115 N ILE A 33 SHEET 5 B 5 ILE A 121 SER A 123 -1 O SER A 123 N LEU A 114 CISPEP 1 ILE A 109 PRO A 110 1 0.30 CISPEP 2 ILE A 109 PRO A 110 2 0.98 CISPEP 3 ILE A 109 PRO A 110 3 1.94 CISPEP 4 ILE A 109 PRO A 110 4 1.31 CISPEP 5 ILE A 109 PRO A 110 5 0.98 CISPEP 6 ILE A 109 PRO A 110 6 1.47 CISPEP 7 ILE A 109 PRO A 110 7 2.00 CISPEP 8 ILE A 109 PRO A 110 8 0.95 CISPEP 9 ILE A 109 PRO A 110 9 -0.07 CISPEP 10 ILE A 109 PRO A 110 10 0.66 CISPEP 11 ILE A 109 PRO A 110 11 1.73 CISPEP 12 ILE A 109 PRO A 110 12 1.63 CISPEP 13 ILE A 109 PRO A 110 13 1.09 CISPEP 14 ILE A 109 PRO A 110 14 1.12 CISPEP 15 ILE A 109 PRO A 110 15 0.20 CISPEP 16 ILE A 109 PRO A 110 16 1.02 CISPEP 17 ILE A 109 PRO A 110 17 0.89 CISPEP 18 ILE A 109 PRO A 110 18 1.19 CISPEP 19 ILE A 109 PRO A 110 19 2.10 CISPEP 20 ILE A 109 PRO A 110 20 2.12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1