HEADER TRANSCRIPTION 16-OCT-11 2LKM TITLE STRUCTURAL BASIS FOR MOLECULAR INTERACTIONS INVOLVING MRG DOMAINS: TITLE 2 IMPLICATIONS IN CHROMATIN BIOLOGY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHD FINGER PROTEIN 12; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 200-241; COMPND 5 SYNONYM: PHD FACTOR 1, PF1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MORTALITY FACTOR 4-LIKE PROTEIN 1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 194-362; COMPND 11 SYNONYM: MORF-RELATED GENE 15 PROTEIN, PROTEIN MSL3-1, TRANSCRIPTION COMPND 12 FACTOR-LIKE PROTEIN MRG15; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHF12, KIAA1523; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PMCSG7; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: MORF4L1, MRG15, FWP006, HSPC008, HSPC061, PP368; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PMCSG7 KEYWDS PROTEIN-PROTEIN COMPLEX, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.XIE,I.RADHAKRISHNAN REVDAT 4 15-MAY-24 2LKM 1 REMARK REVDAT 3 14-JUN-23 2LKM 1 REMARK SEQADV REVDAT 2 21-MAR-12 2LKM 1 JRNL REVDAT 1 18-JAN-12 2LKM 0 JRNL AUTH T.XIE,R.GRAVELINE,G.S.KUMAR,Y.ZHANG,A.KRISHNAN,G.DAVID, JRNL AUTH 2 I.RADHAKRISHNAN JRNL TITL STRUCTURAL BASIS FOR MOLECULAR INTERACTIONS INVOLVING MRG JRNL TITL 2 DOMAINS: IMPLICATIONS IN CHROMATIN BIOLOGY. JRNL REF STRUCTURE V. 20 151 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22244764 JRNL DOI 10.1016/J.STR.2011.10.019 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000102496. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN_1, 0.9 MM PROTEIN_2, 50 REMARK 210 MM SODIUM PHOSPHATE, 10 % [U-100% REMARK 210 2H] D2O, 5 MM [U-2H] DTT, 0.2 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 0.9 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN_1, 0.9 MM PROTEIN_2, 50 REMARK 210 MM POTASSIUM CHLORIDE, 100 % [U- REMARK 210 100% 2H] D2O, 5 MM [U-2H] DTT, REMARK 210 0.2 % SODIUM AZIDE, 100% D2O; REMARK 210 0.9 MM PROTEIN_1, 0.9 MM [U-100% REMARK 210 13C; U-100% 15N] PROTEIN_2, 50 REMARK 210 MM SODIUM PHOSPHATE, 10 % [U-100% REMARK 210 2H] D2O, 5 MM [U-2H] DTT, 0.2 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 0.9 MM PROTEIN_1, 0.9 MM [U-100% REMARK 210 13C; U-100% 15N] PROTEIN_2, 50 REMARK 210 MM SODIUM PHOSPHATE, 100 % [U- REMARK 210 100% 2H] D2O, 5 MM [U-2H] DTT, REMARK 210 0.2 % SODIUM AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D REMARK 210 HCACO; 3D HCCH-COSY; 3D HCCH- REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.2, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 230 HZ3 LYS B 165 1.57 REMARK 500 HH21 ARG A 207 OE2 GLU A 211 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 222 89.00 -65.99 REMARK 500 1 THR A 223 -88.16 -93.50 REMARK 500 1 GLN A 224 139.25 -178.14 REMARK 500 1 PRO A 228 160.91 -48.46 REMARK 500 1 THR A 232 -46.63 -160.41 REMARK 500 1 CYS A 233 105.16 65.84 REMARK 500 1 LYS B 159 101.86 66.81 REMARK 500 1 PRO B 185 108.82 -40.77 REMARK 500 1 ASN B 206 -70.38 -119.33 REMARK 500 1 GLN B 232 30.02 -155.45 REMARK 500 1 GLN B 256 -167.74 -110.91 REMARK 500 1 VAL B 257 -33.92 62.01 REMARK 500 2 TYR A 201 -34.55 -155.21 REMARK 500 2 VAL A 202 127.33 75.49 REMARK 500 2 ASN A 221 167.42 65.91 REMARK 500 2 PRO A 222 80.87 -63.45 REMARK 500 2 PHE A 225 109.67 -56.93 REMARK 500 2 THR A 232 -27.60 -168.16 REMARK 500 2 CYS A 233 94.77 70.90 REMARK 500 2 LEU A 237 168.95 69.02 REMARK 500 2 ALA B 154 103.92 72.13 REMARK 500 2 LYS B 159 138.99 72.40 REMARK 500 2 PRO B 185 107.83 -47.23 REMARK 500 2 ASN B 206 -37.85 75.40 REMARK 500 2 ASP B 208 -62.60 68.04 REMARK 500 2 THR B 231 -77.92 -116.34 REMARK 500 3 PRO A 222 100.89 -47.20 REMARK 500 3 THR A 232 -122.63 -124.62 REMARK 500 3 CYS A 233 15.64 -165.50 REMARK 500 3 LYS B 159 143.54 70.87 REMARK 500 3 PRO B 185 106.51 -52.64 REMARK 500 3 ASP B 208 -80.54 -57.24 REMARK 500 3 ASN B 209 12.43 -174.82 REMARK 500 3 GLN B 232 -34.24 -149.27 REMARK 500 4 GLN A 203 148.37 68.94 REMARK 500 4 PRO A 222 74.92 -69.43 REMARK 500 4 THR A 232 112.67 -174.45 REMARK 500 4 CYS A 233 102.31 -56.34 REMARK 500 4 LYS B 159 -179.18 66.44 REMARK 500 4 PRO B 185 106.84 -52.64 REMARK 500 4 ASP B 208 -53.73 68.07 REMARK 500 4 ASN B 209 45.52 -78.88 REMARK 500 4 THR B 231 -84.69 -107.59 REMARK 500 5 THR A 223 15.03 55.57 REMARK 500 5 PRO A 228 162.44 -46.83 REMARK 500 5 THR A 232 -28.17 -171.07 REMARK 500 5 CYS A 233 93.63 64.85 REMARK 500 5 PRO B 185 108.17 -51.88 REMARK 500 5 ASP B 208 -79.24 -74.94 REMARK 500 5 THR B 231 -77.07 -109.93 REMARK 500 REMARK 500 THIS ENTRY HAS 201 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18000 RELATED DB: BMRB DBREF 2LKM A 200 241 UNP Q96QT6 PHF12_HUMAN 200 241 DBREF 2LKM B 155 323 UNP Q9UBU8 MO4L1_HUMAN 194 362 SEQADV 2LKM SER B 152 UNP Q9UBU8 EXPRESSION TAG SEQADV 2LKM ASN B 153 UNP Q9UBU8 EXPRESSION TAG SEQADV 2LKM ALA B 154 UNP Q9UBU8 EXPRESSION TAG SEQADV 2LKM ARG B 201 UNP Q9UBU8 LYS 240 ENGINEERED MUTATION SEQRES 1 A 42 ASP TYR VAL GLN PRO GLN LEU ARG ARG PRO PHE GLU LEU SEQRES 2 A 42 LEU ILE ALA ALA ALA MET GLU ARG ASN PRO THR GLN PHE SEQRES 3 A 42 GLN LEU PRO ASN GLU LEU THR CYS THR THR ALA LEU PRO SEQRES 4 A 42 GLY SER SER SEQRES 1 B 172 SER ASN ALA GLU VAL LYS VAL LYS ILE PRO GLU GLU LEU SEQRES 2 B 172 LYS PRO TRP LEU VAL ASP ASP TRP ASP LEU ILE THR ARG SEQRES 3 B 172 GLN LYS GLN LEU PHE TYR LEU PRO ALA LYS LYS ASN VAL SEQRES 4 B 172 ASP SER ILE LEU GLU ASP TYR ALA ASN TYR ARG LYS SER SEQRES 5 B 172 ARG GLY ASN THR ASP ASN LYS GLU TYR ALA VAL ASN GLU SEQRES 6 B 172 VAL VAL ALA GLY ILE LYS GLU TYR PHE ASN VAL MET LEU SEQRES 7 B 172 GLY THR GLN LEU LEU TYR LYS PHE GLU ARG PRO GLN TYR SEQRES 8 B 172 ALA GLU ILE LEU ALA ASP HIS PRO ASP ALA PRO MET SER SEQRES 9 B 172 GLN VAL TYR GLY ALA PRO HIS LEU LEU ARG LEU PHE VAL SEQRES 10 B 172 ARG ILE GLY ALA MET LEU ALA TYR THR PRO LEU ASP GLU SEQRES 11 B 172 LYS SER LEU ALA LEU LEU LEU ASN TYR LEU HIS ASP PHE SEQRES 12 B 172 LEU LYS TYR LEU ALA LYS ASN SER ALA THR LEU PHE SER SEQRES 13 B 172 ALA SER ASP TYR GLU VAL ALA PRO PRO GLU TYR HIS ARG SEQRES 14 B 172 LYS ALA VAL HELIX 1 1 ARG A 207 MET A 218 1 12 HELIX 2 2 LYS B 165 THR B 176 1 12 HELIX 3 3 VAL B 190 SER B 203 1 14 HELIX 4 4 GLU B 211 MET B 228 1 18 HELIX 5 5 ARG B 239 ASP B 248 5 10 HELIX 6 6 MET B 254 VAL B 257 1 4 HELIX 7 7 ALA B 260 ILE B 270 1 11 HELIX 8 8 GLY B 271 LEU B 274 1 4 HELIX 9 9 GLU B 281 LYS B 300 1 20 HELIX 10 10 SER B 302 LEU B 305 1 4 HELIX 11 11 GLU B 317 LYS B 321 1 5 SHEET 1 A 2 GLN B 180 PHE B 182 0 SHEET 2 A 2 TYR B 311 VAL B 313 -1 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1