HEADER RNA BINDING PROTEIN 23-OCT-11 2LKZ TITLE SOLUTION STRUCTURE OF THE SECOND RRM DOMAIN OF RBM5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM 2 DOMAIN, UNP RESIDUES 231-316; COMPND 5 SYNONYM: PROTEIN G15, PUTATIVE TUMOR SUPPRESSOR LUCA15, RNA-BINDING COMPND 6 MOTIF PROTEIN 5, RENAL CARCINOMA ANTIGEN NY-REN-9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM5, H37, LUCA15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A MODIFIED KEYWDS RRM, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Z.SONG,P.WU,J.ZHANG,J.WU,Y.SHI REVDAT 2 14-JUN-23 2LKZ 1 REMARK SEQADV REVDAT 1 08-AUG-12 2LKZ 0 JRNL AUTH Z.SONG,P.WU,P.JI,J.ZHANG,Q.GONG,J.WU,Y.SHI JRNL TITL SOLUTION STRUCTURE OF THE SECOND RRM DOMAIN OF RBM5 AND ITS JRNL TITL 2 UNUSUAL BINDING CHARACTERS FOR DIFFERENT RNA TARGETS JRNL REF BIOCHEMISTRY 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22839758 JRNL DOI 10.1021/BI300539T REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, PROCHECKNMR, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), LASKOWSKI AND MACARTHUR (PROCHECKNMR), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LKZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000102509. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 40 MM SODIUM PHOSPHATE-1, 50 MM REMARK 210 SODIUM CHLORIDE-2, 2 MM EDTA-3, REMARK 210 1 MM SODIUM AZIDE-4, 90% H2O/10% REMARK 210 D2O; 40 MM SODIUM PHOSPHATE-5, REMARK 210 50 MM SODIUM CHLORIDE-6, 2 MM REMARK 210 EDTA-7, 1 MM SODIUM AZIDE-8, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCO; 3D H(CCO)NH; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D 1H- REMARK 210 15N NOESY; 2D 1H-13C HSQC; 3D REMARK 210 HCCH-COSY; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRDRAW, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 8 21.05 -156.69 REMARK 500 1 MET A 9 147.08 58.69 REMARK 500 1 ASP A 10 33.09 -174.01 REMARK 500 1 ALA A 34 -179.98 175.75 REMARK 500 1 GLN A 50 28.30 45.93 REMARK 500 1 ASN A 52 143.07 -34.88 REMARK 500 1 PRO A 79 -176.71 -48.38 REMARK 500 1 ASP A 83 103.88 -34.51 REMARK 500 1 LYS A 85 -178.09 -177.56 REMARK 500 2 HIS A 3 144.54 64.65 REMARK 500 2 HIS A 4 71.73 -163.45 REMARK 500 2 HIS A 6 26.18 -142.28 REMARK 500 2 ASP A 10 31.06 -174.80 REMARK 500 2 ASN A 16 60.53 62.15 REMARK 500 2 ALA A 34 -176.34 176.84 REMARK 500 2 GLN A 50 29.40 42.05 REMARK 500 2 ASN A 52 142.02 -37.24 REMARK 500 2 ARG A 53 32.88 -89.41 REMARK 500 2 PRO A 79 -176.96 -48.37 REMARK 500 2 ASP A 83 104.41 -33.01 REMARK 500 2 LYS A 85 -179.74 -172.19 REMARK 500 2 LYS A 93 -165.28 -101.35 REMARK 500 3 HIS A 3 -79.79 -68.53 REMARK 500 3 HIS A 4 90.13 45.86 REMARK 500 3 HIS A 5 75.28 -60.98 REMARK 500 3 ASP A 10 37.68 -175.42 REMARK 500 3 ALA A 34 -179.50 173.07 REMARK 500 3 ILE A 44 107.05 -59.90 REMARK 500 3 ASN A 52 144.58 -36.81 REMARK 500 3 ARG A 53 32.51 -91.22 REMARK 500 3 ASP A 83 103.88 -34.38 REMARK 500 3 LYS A 85 -175.82 177.39 REMARK 500 4 HIS A 4 -94.25 -144.19 REMARK 500 4 HIS A 7 40.31 -84.68 REMARK 500 4 ASP A 10 27.28 -158.98 REMARK 500 4 ASN A 16 55.93 75.84 REMARK 500 4 ALA A 34 -171.36 -177.69 REMARK 500 4 ILE A 44 97.74 -60.15 REMARK 500 4 ASN A 52 129.77 -38.28 REMARK 500 4 PRO A 79 -178.10 -47.95 REMARK 500 4 ASP A 83 104.41 -31.15 REMARK 500 4 SER A 94 45.74 -105.57 REMARK 500 5 HIS A 4 147.62 59.01 REMARK 500 5 HIS A 7 -0.47 -158.12 REMARK 500 5 HIS A 8 -124.93 -96.97 REMARK 500 5 ASP A 10 26.83 -175.08 REMARK 500 5 ASN A 16 52.93 80.04 REMARK 500 5 ALA A 34 -171.79 -173.47 REMARK 500 5 ILE A 44 96.15 -60.13 REMARK 500 5 ASN A 52 143.86 -38.17 REMARK 500 REMARK 500 THIS ENTRY HAS 217 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18017 RELATED DB: BMRB DBREF 2LKZ A 10 95 UNP P52756 RBM5_HUMAN 231 316 SEQADV 2LKZ MET A 1 UNP P52756 EXPRESSION TAG SEQADV 2LKZ GLY A 2 UNP P52756 EXPRESSION TAG SEQADV 2LKZ HIS A 3 UNP P52756 EXPRESSION TAG SEQADV 2LKZ HIS A 4 UNP P52756 EXPRESSION TAG SEQADV 2LKZ HIS A 5 UNP P52756 EXPRESSION TAG SEQADV 2LKZ HIS A 6 UNP P52756 EXPRESSION TAG SEQADV 2LKZ HIS A 7 UNP P52756 EXPRESSION TAG SEQADV 2LKZ HIS A 8 UNP P52756 EXPRESSION TAG SEQADV 2LKZ MET A 9 UNP P52756 EXPRESSION TAG SEQRES 1 A 95 MET GLY HIS HIS HIS HIS HIS HIS MET ASP THR ILE ILE SEQRES 2 A 95 LEU ARG ASN ILE ALA PRO HIS THR VAL VAL ASP SER ILE SEQRES 3 A 95 MET THR ALA LEU SER PRO TYR ALA SER LEU ALA VAL ASN SEQRES 4 A 95 ASN ILE ARG LEU ILE LYS ASP LYS GLN THR GLN GLN ASN SEQRES 5 A 95 ARG GLY PHE ALA PHE VAL GLN LEU SER SER ALA MET ASP SEQRES 6 A 95 ALA SER GLN LEU LEU GLN ILE LEU GLN SER LEU HIS PRO SEQRES 7 A 95 PRO LEU LYS ILE ASP GLY LYS THR ILE GLY VAL ASP PHE SEQRES 8 A 95 ALA LYS SER ALA HELIX 1 1 VAL A 22 LEU A 30 1 9 HELIX 2 2 ALA A 37 ASN A 39 5 3 HELIX 3 3 ALA A 63 SER A 75 1 13 SHEET 1 A 5 ILE A 41 ARG A 42 0 SHEET 2 A 5 PHE A 55 GLN A 59 -1 O PHE A 57 N ARG A 42 SHEET 3 A 5 THR A 11 ARG A 15 -1 N ILE A 12 O VAL A 58 SHEET 4 A 5 LYS A 85 PHE A 91 -1 O ASP A 90 N ILE A 13 SHEET 5 A 5 LEU A 80 ILE A 82 -1 N LEU A 80 O ILE A 87 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1