data_2LML # _entry.id 2LML # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LML pdb_00002lml 10.2210/pdb2lml/pdb RCSB RCSB102567 ? ? BMRB 16860 ? ? WWPDB D_1000102567 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2012-01-25 _pdbx_database_PDB_obs_spr.pdb_id 2LML _pdbx_database_PDB_obs_spr.replace_pdb_id 2KWM _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 16860 BMRB unspecified . gmr141 TargetDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LML _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-12-05 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ramelot, T.A.' 1 'Smola, M.J.' 2 'Lee, H.' 3 'Zhao, L.' 4 'Ciccosanti, C.' 5 'Foote, E.L.' 6 'Hamilton, K.' 7 'Nair, R.' 8 'Rost, B.' 9 'Swapna, G.' 10 'Acton, T.B.' 11 'Xiao, R.' 12 'Everett, J.K.' 13 'Prestegard, J.H.' 14 'Montelione, G.T.' 15 'Kennedy, M.A.' 16 'Northeast Structural Genomics Consortium (NESG)' 17 # _citation.id primary _citation.title ;Solution structure of 4'-phosphopantetheine - GmACP3 from Geobacter metallireducens: a specialized acyl carrier protein with atypical structural features and a putative role in lipopolysaccharide biosynthesis. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 50 _citation.page_first 1442 _citation.page_last 1453 _citation.year 2011 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21235239 _citation.pdbx_database_id_DOI 10.1021/bi101932s # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ramelot, T.A.' 1 ? primary 'Smola, M.J.' 2 ? primary 'Lee, H.W.' 3 ? primary 'Ciccosanti, C.' 4 ? primary 'Hamilton, K.' 5 ? primary 'Acton, T.B.' 6 ? primary 'Xiao, R.' 7 ? primary 'Everett, J.K.' 8 ? primary 'Prestegard, J.H.' 9 ? primary 'Montelione, G.T.' 10 ? primary 'Kennedy, M.A.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative acyl carrier protein' 10024.452 1 ? ? ? ? 2 non-polymer syn "4'-PHOSPHOPANTETHEINE" 358.348 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MPTLDALTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLADLVDKKLARKL EHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MPTLDALTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLADLVDKKLARKL EHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier gmr141 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PRO n 1 3 THR n 1 4 LEU n 1 5 ASP n 1 6 ALA n 1 7 LEU n 1 8 THR n 1 9 PRO n 1 10 ILE n 1 11 PHE n 1 12 ARG n 1 13 GLN n 1 14 VAL n 1 15 PHE n 1 16 ASP n 1 17 ASP n 1 18 ASP n 1 19 SER n 1 20 ILE n 1 21 VAL n 1 22 LEU n 1 23 THR n 1 24 ARG n 1 25 GLU n 1 26 THR n 1 27 SER n 1 28 ALA n 1 29 ASN n 1 30 ASP n 1 31 ILE n 1 32 ASP n 1 33 ALA n 1 34 TRP n 1 35 ASP n 1 36 SER n 1 37 LEU n 1 38 SER n 1 39 HIS n 1 40 MET n 1 41 ASN n 1 42 LEU n 1 43 ILE n 1 44 VAL n 1 45 SER n 1 46 LEU n 1 47 GLU n 1 48 VAL n 1 49 HIS n 1 50 TYR n 1 51 LYS n 1 52 ILE n 1 53 LYS n 1 54 PHE n 1 55 ALA n 1 56 LEU n 1 57 GLY n 1 58 GLU n 1 59 LEU n 1 60 GLN n 1 61 LYS n 1 62 LEU n 1 63 LYS n 1 64 ASN n 1 65 VAL n 1 66 GLY n 1 67 ASP n 1 68 LEU n 1 69 ALA n 1 70 ASP n 1 71 LEU n 1 72 VAL n 1 73 ASP n 1 74 LYS n 1 75 LYS n 1 76 LEU n 1 77 ALA n 1 78 ARG n 1 79 LYS n 1 80 LEU n 1 81 GLU n 1 82 HIS n 1 83 HIS n 1 84 HIS n 1 85 HIS n 1 86 HIS n 1 87 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Gmet_2339 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'GS-15 / ATCC 53774 / DSM 7210' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacter metallireducens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 269799 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector 'pET 21-23C' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description GmR141-21.1 # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q39T60_GEOMG _struct_ref.pdbx_db_accession Q39T60 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MPTLDALTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLADLVDKKLARK _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LML _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 79 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q39T60 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 79 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 79 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2LML LEU A 80 ? UNP Q39T60 ? ? 'expression tag' 80 1 1 2LML GLU A 81 ? UNP Q39T60 ? ? 'expression tag' 81 2 1 2LML HIS A 82 ? UNP Q39T60 ? ? 'expression tag' 82 3 1 2LML HIS A 83 ? UNP Q39T60 ? ? 'expression tag' 83 4 1 2LML HIS A 84 ? UNP Q39T60 ? ? 'expression tag' 84 5 1 2LML HIS A 85 ? UNP Q39T60 ? ? 'expression tag' 85 6 1 2LML HIS A 86 ? UNP Q39T60 ? ? 'expression tag' 86 7 1 2LML HIS A 87 ? UNP Q39T60 ? ? 'expression tag' 87 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PNS non-polymer . "4'-PHOSPHOPANTETHEINE" ? 'C11 H23 N2 O7 P S' 358.348 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC aliphatic' 1 3 1 '2D 1H-13C HSQC aromatic' 1 4 3 '2D 1H-15N HSQC' 1 5 3 '2D 1H-13C HSQC' 1 6 2 '2D 1H-13C HSQC-CT' 1 7 1 '3D 1H-15N NOESY' 1 8 1 '3D 1H-13C NOESY_aliph' 1 9 1 '3D HNCO' 1 10 1 '3D HNCACB' 1 11 1 '3D CBCA(CO)NH' 1 12 1 '3D 1H-13C NOESY_arom' 1 13 1 '3D HN(CO)CA' 1 14 1 '3D HBHA(CO)NH' 1 15 1 '3D C(CCO)NH' 1 16 3 '3D HCCH-COSY' 1 17 1 '3D HCCH-TOCSY' 1 18 3 '3D CCH-TOCSY' 1 19 3 '4D CC-NOESY' 1 20 1 '2D 1H-13C HSQC aromatic' 1 21 2 '2D 1H-15N hetNOE' 1 22 2 '2D 1H-15N HSQC_His' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;1.0 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;1.0 mM U-100% 15N and 5% 13C biosynthetically directed protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide, 90% H2O/10% D2O ; 2 '90% H2O/10% D2O' ;1.0 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT, 100% D2O ; 3 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian INOVA 1 'Varian INOVA' 850 Bruker 'AVANCE III' 2 'Bruker Avance III' # _pdbx_nmr_refine.entry_id 2LML _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'CNS water refinement (via fmcGui) + RDCs' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LML _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LML _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe 2008 1 Varian collection VNMR 6.1C 2 'Bruker Biospin' collection TopSpin 2.1.4 3 'Huang, Tejero, Powers and Montelione' 'data analysis' AutoStructure 2.2.1 4 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' 2.25 5 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS 1.3 6 Goddard 'data analysis' Sparky 3.113 7 'Bhattacharya and Montelione' refinement PSVS 1.4 8 'Zimmerman, Moseley, Kulikowski and Montelione' 'chemical shift assignment' AutoAssign 2.30 9 '(PdbStat)-Roberto Tejero and Gaetano T. Montelione' 'structure solution' PdbStat 5.4 10 'Bahrami, Markley, Assadi, and Eghbalnia' 'chemical shift autoassignment' 'PINE Server' 1.0 11 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 2.1 12 'Alex Lemak, University of Toronto' refinement FMCGUI ? 13 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LML _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LML _struct.title ;Solution NMR structure of holo acyl carrier protein from geobacter Metallireducens refined with nh rdcs, Northeast Structural Genomics consortium target gmr141 ; _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LML _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'Structural Genomics, PSI-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 2 ? PHE A 15 ? PRO A 2 PHE A 15 1 ? 14 HELX_P HELX_P2 2 SER A 27 ? ILE A 31 ? SER A 27 ILE A 31 5 ? 5 HELX_P HELX_P3 3 ASP A 35 ? TYR A 50 ? ASP A 35 TYR A 50 1 ? 16 HELX_P HELX_P4 4 ALA A 55 ? GLN A 60 ? ALA A 55 GLN A 60 1 ? 6 HELX_P HELX_P5 5 ASN A 64 ? GLU A 81 ? ASN A 64 GLU A 81 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 36 _struct_conn.ptnr1_label_atom_id OG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id PNS _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id P24 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 36 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PNS _struct_conn.ptnr2_auth_seq_id 88 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.618 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id PNS _struct_site.pdbx_auth_seq_id 88 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE PNS A 88' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ALA A 28 ? ALA A 28 . ? 1_555 ? 2 AC1 8 TRP A 34 ? TRP A 34 . ? 1_555 ? 3 AC1 8 ASP A 35 ? ASP A 35 . ? 1_555 ? 4 AC1 8 SER A 36 ? SER A 36 . ? 1_555 ? 5 AC1 8 HIS A 39 ? HIS A 39 . ? 1_555 ? 6 AC1 8 LEU A 62 ? LEU A 62 . ? 1_555 ? 7 AC1 8 LYS A 63 ? LYS A 63 . ? 1_555 ? 8 AC1 8 LEU A 68 ? LEU A 68 . ? 1_555 ? # _atom_sites.entry_id 2LML _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 TRP 34 34 34 TRP TRP A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 HIS 39 39 39 HIS HIS A . n A 1 40 MET 40 40 40 MET MET A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 HIS 82 82 82 HIS HIS A . n A 1 83 HIS 83 83 83 HIS HIS A . n A 1 84 HIS 84 84 84 HIS HIS A . n A 1 85 HIS 85 85 85 HIS HIS A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 HIS 87 87 87 HIS HIS A . n # _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center NESG _pdbx_SG_project.project_name PSI:Biology # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id PNS _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 88 _pdbx_nonpoly_scheme.auth_seq_num 88 _pdbx_nonpoly_scheme.pdb_mon_id PNS _pdbx_nonpoly_scheme.auth_mon_id PNS _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-01-25 2 'Structure model' 1 1 2012-02-22 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_ref_seq_dif.details' 8 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id protein-1 1.0 ? mM '[U-100% 13C; U-100% 15N]' 1 MES-2 20 ? mM ? 1 'sodium chloride-3' 100 ? mM ? 1 'calcium chloride-4' 5 ? mM ? 1 'sodium azide-5' 0.02 ? % ? 1 DTT-6 10 ? mM ? 1 protein-7 1.0 ? mM 'U-100% 15N and 5% 13C biosynthetically directed' 2 MES-8 20 ? mM ? 2 'sodium chloride-9' 100 ? mM ? 2 'calcium chloride-10' 5 ? mM ? 2 DTT-11 10 ? mM ? 2 'sodium azide-12' 0.02 ? % ? 2 protein-13 1.0 ? mM '[U-100% 13C; U-100% 15N]' 3 MES-14 20 ? mM ? 3 'sodium chloride-15' 100 ? mM ? 3 'calcium chloride-16' 5 ? mM ? 3 'sodium azide-17' 0.02 ? % ? 3 DTT-18 10 ? mM ? 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 OG A SER 36 ? ? O25 A PNS 88 ? ? 1.14 2 7 OG A SER 36 ? ? O25 A PNS 88 ? ? 1.24 3 9 OG A SER 36 ? ? O25 A PNS 88 ? ? 1.17 4 10 OG A SER 36 ? ? O25 A PNS 88 ? ? 1.22 5 11 OG A SER 36 ? ? O25 A PNS 88 ? ? 1.20 6 13 OG A SER 36 ? ? O25 A PNS 88 ? ? 1.41 7 14 OG A SER 36 ? ? O25 A PNS 88 ? ? 1.33 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 2 ? ? -94.35 33.88 2 1 ASP A 16 ? ? 51.98 75.05 3 1 ALA A 33 ? ? 159.55 -41.83 4 1 HIS A 82 ? ? -62.01 81.79 5 2 PRO A 2 ? ? -93.36 44.28 6 2 THR A 3 ? ? -64.08 -77.04 7 2 ASP A 16 ? ? 67.28 80.88 8 2 ASP A 17 ? ? -176.67 114.85 9 2 GLU A 81 ? ? -57.56 106.50 10 2 HIS A 84 ? ? -170.53 -55.10 11 2 HIS A 86 ? ? 67.51 -69.20 12 3 ASP A 16 ? ? 63.12 74.84 13 3 ASP A 18 ? ? -151.36 -28.60 14 3 LYS A 79 ? ? -84.09 -70.73 15 3 LEU A 80 ? ? 54.33 -84.01 16 3 GLU A 81 ? ? 63.78 -81.73 17 3 HIS A 85 ? ? 72.31 -52.94 18 3 HIS A 86 ? ? 67.99 90.85 19 4 PRO A 2 ? ? -96.17 33.02 20 4 ASP A 18 ? ? -144.00 -22.19 21 4 LEU A 80 ? ? 72.91 -6.17 22 4 GLU A 81 ? ? 58.77 -84.47 23 4 HIS A 84 ? ? 60.23 -156.67 24 4 HIS A 85 ? ? 72.60 -75.82 25 4 HIS A 86 ? ? -143.14 -70.46 26 5 PRO A 2 ? ? -93.86 49.01 27 5 ASP A 16 ? ? 60.76 64.60 28 5 ASP A 17 ? ? -164.30 118.58 29 5 THR A 26 ? ? -63.32 95.49 30 5 LEU A 80 ? ? -67.71 94.38 31 5 HIS A 82 ? ? -167.12 -30.69 32 5 HIS A 84 ? ? -166.56 -76.90 33 5 HIS A 85 ? ? -160.72 80.46 34 6 PRO A 2 ? ? -96.17 44.78 35 6 THR A 3 ? ? -62.03 -75.74 36 6 ASP A 16 ? ? 58.07 80.77 37 6 ASP A 17 ? ? -172.43 108.91 38 6 LEU A 80 ? ? -87.43 44.48 39 6 GLU A 81 ? ? -84.75 48.28 40 7 PRO A 2 ? ? -96.92 47.77 41 7 ASN A 29 ? ? 158.81 -63.76 42 7 LEU A 80 ? ? -67.07 84.54 43 7 GLU A 81 ? ? -91.77 -147.36 44 7 HIS A 83 ? ? 70.03 -77.19 45 7 HIS A 84 ? ? 68.92 157.71 46 7 HIS A 86 ? ? 63.68 168.73 47 8 PRO A 2 ? ? -99.19 40.54 48 8 THR A 3 ? ? -63.71 -73.95 49 8 ALA A 33 ? ? 164.74 -37.55 50 8 LYS A 79 ? ? -83.58 -72.11 51 8 LEU A 80 ? ? 57.90 13.65 52 8 HIS A 82 ? ? 62.70 79.47 53 8 HIS A 84 ? ? -153.39 87.07 54 9 ASP A 16 ? ? 77.51 -9.91 55 9 LEU A 80 ? ? -103.28 -72.81 56 9 HIS A 83 ? ? 67.69 -175.11 57 9 HIS A 86 ? ? -69.47 92.29 58 10 PRO A 2 ? ? -92.36 47.37 59 10 THR A 3 ? ? -63.04 -75.67 60 10 ASP A 16 ? ? 61.17 79.99 61 10 HIS A 83 ? ? -167.02 -27.84 62 10 HIS A 84 ? ? 71.19 -73.78 63 11 THR A 3 ? ? -73.05 -76.54 64 11 ASP A 16 ? ? 59.66 70.58 65 11 ASP A 17 ? ? -161.54 117.50 66 11 HIS A 83 ? ? 77.42 139.12 67 11 HIS A 84 ? ? 63.20 82.78 68 12 THR A 26 ? ? -61.62 93.68 69 12 HIS A 83 ? ? -155.29 -154.82 70 12 HIS A 84 ? ? 73.30 103.10 71 12 HIS A 86 ? ? -153.74 -16.79 72 13 ASP A 16 ? ? 61.21 80.21 73 13 ASP A 17 ? ? -163.89 115.03 74 13 LEU A 80 ? ? 65.70 -61.70 75 13 GLU A 81 ? ? 75.06 -179.47 76 14 PRO A 2 ? ? -96.87 33.61 77 14 ASP A 16 ? ? 59.47 80.63 78 14 HIS A 83 ? ? -171.97 -58.97 79 14 HIS A 84 ? ? 57.12 -76.56 80 14 HIS A 86 ? ? -153.32 63.21 81 15 ASP A 16 ? ? 59.16 82.96 82 15 ILE A 20 ? ? -68.89 99.02 83 15 THR A 26 ? ? -58.08 98.91 84 15 LYS A 79 ? ? -70.36 -75.97 85 15 LEU A 80 ? ? 50.88 -73.30 86 15 HIS A 82 ? ? -68.56 91.92 87 16 ASP A 16 ? ? 62.21 77.36 88 17 PRO A 2 ? ? -98.20 38.51 89 17 THR A 3 ? ? -54.55 -75.81 90 17 ASP A 16 ? ? 63.11 71.13 91 17 ASP A 18 ? ? -141.50 -25.52 92 17 ASN A 29 ? ? 156.20 -60.72 93 17 LEU A 80 ? ? -58.37 93.83 94 17 HIS A 83 ? ? -178.45 137.16 95 18 PRO A 2 ? ? -84.41 40.37 96 18 THR A 3 ? ? -62.98 -72.31 97 19 PRO A 2 ? ? -88.25 41.55 98 19 THR A 3 ? ? -70.52 -76.80 99 19 ASP A 16 ? ? 62.76 81.54 100 19 LEU A 80 ? ? -65.85 85.23 101 19 HIS A 83 ? ? 66.01 96.75 102 19 HIS A 85 ? ? -87.49 42.32 103 20 PRO A 2 ? ? -96.56 33.70 104 20 THR A 3 ? ? -64.36 -75.85 105 20 THR A 26 ? ? -65.07 96.87 106 20 LYS A 79 ? ? -84.35 -72.36 107 20 HIS A 83 ? ? 176.57 -38.52 108 20 HIS A 84 ? ? 59.89 -82.53 109 20 HIS A 85 ? ? -176.96 14.23 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 7 _pdbx_validate_peptide_omega.auth_comp_id_1 ALA _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 28 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASN _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 29 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -146.61 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name "4'-PHOSPHOPANTETHEINE" _pdbx_entity_nonpoly.comp_id PNS #